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Pregenerated sensors for ST6GALNAC5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039037

Ensembl transcript IDs: ENSMUST00000044278.6

Found 149 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGCGTTCTGGAATGTTCTCTGGCCGCTGGGATCTGTCCATGGTGCTaGAGGACGCCGCTCTTCTCGGTCACCCATTCAGTTCCCGTTTCC +
Preference number: 1 (lower is better)
Translates to: SVLECSLAAGICPWC*RTPLFSVTHSVPVS
Trigger: GGAAACGGGAACTGAATGGGTGACCGAGAAGAGCGGCGTCCTTCAGCACCATGGACAGATCCCAGCGGCCAGAGAACATTCCAGAACGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR GCA 90 bp GAAGGACGCCGCTCTTCTCGGTCACCCATTCAGTTCCCGTTTCCCTaGCTAGAGTTTAAGTCCTTCCTCTCCTGCCACACAGCGTGGACA +
Preference number: 1 (lower is better)
Translates to: EGRRSSRSPIQFPFP*LEFKSFLSCHTAWT
Trigger: TGTCCACGCTGTGTGGCAGGAGAGGAAGGACTTAAACTCTAGGCAGGGAAACGGGAACTGAATGGGTGACCGAGAAGAGCGGCGTCCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR GCA 90 bp ACGTCGGACGGTTGTGAAATGATAGCGGTAAGACAGGAACTCAATTaGCCACAACCAGGTCCATCAGCACAAGCCGTCCGCTCTCGGCGT +
Preference number: 1 (lower is better)
Translates to: TSDGCEMIAVRQELN*PQPGPSAQAVRSRR
Trigger: ACGCCGAGAGCGGACGGCTTGTGCTGATGGACCTGGTTGTGGGCAATTGAGTTCCTGTCTTACCGCTATCATTTCACAACCGTCCGACGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CCA 90 bp CAACACTCATTAGCATGTAAGCGTTCTGGAATGTTCTCTGGCCGCTaGGATCTGTCCATGGTGCTGAAGGACGCCGCTCTTCTCGGTCAC +
Preference number: 1 (lower is better)
Translates to: QHSLACKRSGMFSGR*DLSMVLKDAALLGH
Trigger: GTGACCGAGAAGAGCGGCGTCCTTCAGCACCATGGACAGATCCCAGCGGCCAGAGAACATTCCAGAACGCTTACATGCTAATGAGTGTTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CCA 90 bp AGGACAAGGCTACTCAGTGTGAAATGCTCAGAACCAGAGAGAAACTaGGACCTTCGTCAGGGAGACCCAGAATCACTCCCCAGGGCAAAC +
Preference number: 1 (lower is better)
Translates to: RTRLLSVKCSEPERN*DLRQGDPESLPRAN
Trigger: GTTTGCCCTGGGGAGTGATTCTGGGTCTCCCTGACGAAGGTCCCAGTTTCTCTCTGGTTCTGAGCATTTCACACTGAGTAGCCTTGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CCA 90 bp ATGGATCGCCCAGCTGTGGCATCGTATTATTGTGGTCTTAAAAGCTaGGAGGAGGCTGATGATAGCACTGGGGAGAGACGAGAAGGGAAC +
Preference number: 1 (lower is better)
Translates to: MDRPAVASYYCGLKS*EEADDSTGERREGN
Trigger: GTTCCCTTCTCGTCTCTCCCCAGTGCTATCATCAGCCTCCTCCCAGCTTTTAAGACCACAATAATACGATGCCACAGCTGGGCGATCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR GCA 90 bp TTTGACGTGGGTATCTGTAAAGAAATGCAACTAAAAGTGGCGGGCTaGTCCCGGTTCAGTTTCGAAGGCAATACTCCCAGAGACCTGGGG +
Preference number: 1 (lower is better)
Translates to: FDVGICKEMQLKVAG*SRFSFEGNTPRDLG
Trigger: CCCCAGGTCTCTGGGAGTATTGCCTTCGAAACTGAACCGGGAGCAGCCCGCCACTTTTAGTTGCATTTCTTTACAGATACCCACGTCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CCA 90 bp AAGCCTTCTGGGAAGTCTCACCTCTTTCCACTTCAGAGTGTCTTCTaGTGTGCGCTAAAAACCCAGGCAATCTGTAACTCTCCTCTGGCC +
Preference number: 1 (lower is better)
Translates to: KPSGKSHLFPLQSVF*CALKTQAICNSPLA
Trigger: GGCCAGAGGAGAGTTACAGATTGCCTGGGTTTTTAGCGCACACCAGAAGACACTCTGAAGTGGAAAGAGGTGAGACTTCCCAGAAGGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CCA 90 bp TTGAATGGAGAGAGGAGTCCTTCATATTCCAAGACTTGCAGCCGGTaGGGTGGAACTGTTCTGTGTTCTCAAAACATGGGCAGCTCTTGG +
Preference number: 1 (lower is better)
Translates to: LNGERSPSYSKTCSR*GGTVLCSQNMGSSW
Trigger: CCAAGAGCTGCCCATGTTTTGAGAACACAGAACAGTTCCACCCCACCGGCTGCAAGTCTTGGAATATGAAGGACTCCTCTCTCCATTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CCA 90 bp GGAGTGAGCTTTAACCAAGTTACTCCCAAGCAGTTCCAAGCCTTCTaGGAAGTCTCACCTCTTTCCACTTCAGAGTGTCTTCTGGTGTGC +
Preference number: 1 (lower is better)
Translates to: GVSFNQVTPKQFQAF*EVSPLSTSECLLVC
Trigger: GCACACCAGAAGACACTCTGAAGTGGAAAGAGGTGAGACTTCCCAGAAGGCTTGGAACTGCTTGGGAGTAACTTGGTTAAAGCTCACTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR TCA 90 bp CTGTGTATGTTTAATGGTGTTGGGTGGCATTACGTCGGACGGTTGTaGAATGATAGCGGTAAGACAGGAACTCAATTGCCCACAACCAGG +
Preference number: 1 (lower is better)
Translates to: LCMFNGVGWHYVGRL*NDSGKTGTQLPTTR
Trigger: CCTGGTTGTGGGCAATTGAGTTCCTGTCTTACCGCTATCATTTCACAACCGTCCGACGTAATGCCACCCAACACCATTAAACATACACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR GCA 90 bp CTGACTTTAAATAACTCAAGCCACACCACAATAACACTTTGTCTTTaGTGTCTGAATACCTGGACTGTATCTGCAGCTCCACAATGGCGC +
Preference number: 1 (lower is better)
Translates to: LTLNNSSHTTITLCL*CLNTWTVSAAPQWR
Trigger: GCGCCATTGTGGAGCTGCAGATACAGTCCAGGTATTCAGACAGCAAAGACAAAGTGTTATTGTGGTGTGGCTTGAGTTATTTAAAGTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR TCA 90 bp CGGAAGCATGTCCATACTTTCAGGCCTTTTACAAATCACAAAGTCTaGCAAATGACAGAGACTATAGGTCAGGTTAGGTTTCTGATAAAA +
Preference number: 1 (lower is better)
Translates to: RKHVHTFRPFTNHKV*QMTETIGQVRFLIK
Trigger: TTTTATCAGAAACCTAACCTGACCTATAGTCTCTGTCATTTGTCAGACTTTGTGATTTGTAAAAGGCCTGAAAGTATGGACATGCTTCCG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR TCA 90 bp AATGGAACCACTTATATTTCAACAAATAATCTCTTGGAGGGATTGTaGAGTAGCCTGTCAATCAACTGTGCAGTTTACACCCTTCTTCTG +
Preference number: 1 (lower is better)
Translates to: NGTTYISTNNLLEGL*SSLSINCAVYTLLL
Trigger: CAGAAGAAGGGTGTAAACTGCACAGTTGATTGACAGGCTACTTCACAATCCCTCCAAGAGATTATTTGTTGAAATATAAGTGGTTCCATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR CCA 90 bp CACAACCAGGTCCATCAGCACAAGCCGTCCGCTCTCGGCGTCTTCTTTAATGCAAACATGGGCAGCTCTTaGCACTGCCTCCACCCCCTG +
Preference number: 2 (lower is better)
Translates to: HNQVHQHKPSALGVFFNANMGSS*HCLHPL
Trigger: CAGGGGGTGGAGGCAGTGCCAAGAGCTGCCCATGTT...TGCATTAAAGAAGACGCCGAGAGCGGACGGCTTGTGCTGATGGACCTGGTTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR GCA 90 bp AACCAGAGAGAAACTGGGACCTTCGTCAGGGAGACCCAGAATCACTCCCCAGGGCAGTTCCCGTTTCCCTaGCTAGAGTTTAAGTCCTTC +
Preference number: 2 (lower is better)
Translates to: NQRETGTFVRETQNHSPGQFPFP*LEFKSF
Trigger: GAAGGACTTAAACTCTAGGCAGGGAAACGGGAACTG...CCCTGGGGAGTGATTCTGGGTCTCCCTGACGAAGGTCCCAGTTTCTCTCTGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR CCA 90 bp TTGTCTTTGCTGTCTGAATACCTGGACTGTATCTGCAGCTCCACAATGGCGCCCATGTTCTCTGGCCGCTaGGATCTGTCCATGGTGCTG +
Preference number: 2 (lower is better)
Translates to: LSLLSEYLDCICSSTMAPMFSGR*DLSMVL
Trigger: CAGCACCATGGACAGATCCCAGCGGCCAGAGAACAT...GGGCGCCATTGTGGAGCTGCAGATACAGTCCAGGTATTCAGACAGCAAAGACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR CCA 90 bp AACCAGAGAGAAACTGGGACCTTCGTCAGGGAGACCCAGAATCACTCCCCAGGGCATCTCTACCCTGACTaGAAGTTTCCTCCTACTGTC +
Preference number: 2 (lower is better)
Translates to: NQRETGTFVRETQNHSPGHLYPD*KFPPTV
Trigger: GACAGTAGGAGGAAACTTCCAGTCAGGGTAGAGATG...CCCTGGGGAGTGATTCTGGGTCTCCCTGACGAAGGTCCCAGTTTCTCTCTGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR CCA 90 bp CACAACCAGGTCCATCAGCACAAGCCGTCCGCTCTCGGCGTCTTCTTTAATGCATGTGTTCTCAAAACATaGGCAGCTCTTGGCACTGCC +
Preference number: 2 (lower is better)
Translates to: HNQVHQHKPSALGVFFNACVLKT*AALGTA
Trigger: GGCAGTGCCAAGAGCTGCCCATGTTTTGAGAACACA...TGCATTAAAGAAGACGCCGAGAGCGGACGGCTTGTGCTGATGGACCTGGTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CAA 90 bp ATAGCCCAGTGTTGGAATGACCGATCCAACACTGAGGCCAGAACATaGAGGGCAGAAGGATCTGGAGAAGTAGATGGTGAAGACACGGGG +
Preference number: 2 (lower is better)
Translates to: IAQCWNDRSNTEART*RAEGSGEVDGEDTG
Trigger: CCCCGTGTCTTCACCATCTACTTCTCCAGATCCTTCTGCCCTCAATGTTCTGGCCTCAGTGTTGGATCGGTCATTCCAACACTGGGCTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR CCA 90 bp CCCGGAACCACTGGGGTCTGTAAGCAGGGTTGTGTGTCCTGTGTATGTTTAATGTTGCAGCCGGTGGGGTaGAACTGTTCTGTGTTCTCA +
Preference number: 2 (lower is better)
Translates to: PGTTGVCKQGCVSCVCLMLQPVG*NCSVFS
Trigger: TGAGAACACAGAACAGTTCCACCCCACCGGCTGCAA...CATTAAACATACACAGGACACACAACCCTGCTTACAGACCCCAGTGGTTCCGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR TCA 90 bp AACCAGAGAGAAACTGGGACCTTCGTCAGGGAGACCCAGAATCACTCCCCAGGGCAGACATTTGCTTTATaGAAATCATTGGAGATGTGC +
Preference number: 2 (lower is better)
Translates to: NQRETGTFVRETQNHSPGQTFAL*KSLEMC
Trigger: GCACATCTCCAATGATTTTCATAAAGCAAATGTCTG...CCCTGGGGAGTGATTCTGGGTCTCCCTGACGAAGGTCCCAGTTTCTCTCTGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR TCA 90 bp GAGAGAAACTGGGACCTTCGTCAGGGAGACCCAGAATCACTCCCCAGGGCAAACTTCCACATCAAATACTaGTTTCAAGCTAGTAATGGG +
Preference number: 2 (lower is better)
Translates to: ERNWDLRQGDPESLPRANFHIKY*FQASNG
Trigger: CCCATTACTAGCTTGAAATCAGTATTTGATGTGGAA...GTTTGCCCTGGGGAGTGATTCTGGGTCTCCCTGACGAAGGTCCCAGTTTCTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR GCA 90 bp TGTGCGCTAAAAACCCAGGCAATCTGTAACTCTCCTCTGGCCCCACCTCCTCAGATAACACTTTGTCTTTaGTGTCTGAATACCTGGACT +
Preference number: 2 (lower is better)
Translates to: CALKTQAICNSPLAPPPQITLCL*CLNTWT
Trigger: AGTCCAGGTATTCAGACAGCAAAGACAAAGTGTTAT...CTGAGGAGGTGGGGCCAGAGGAGAGTTACAGATTGCCTGGGTTTTTAGCGCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR CCA 90 bp ACAACCAGGTCCATCAGCACAAGCCGTCCGCTCTCGGCGTCTTCTTTAATGCAGCTTTATGAAAATCATTaGAGATGTGCTCTTCGGAAG +
Preference number: 2 (lower is better)
Translates to: TTRSISTSRPLSASSLMQLYENH*RCALRK
Trigger: CTTCCGAAGAGCACATCTCCAATGATTTTCATAAAG...CTGCATTAAAGAAGACGCCGAGAGCGGACGGCTTGTGCTGATGGACCTGGTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR CCA 90 bp ACAACCAGGTCCATCAGCACAAGCCGTCCGCTCTCGGCGTCTTCTTTAATGCAGATGGGAAAGAACTGGTaGTATGAGACACTTTATTCA +
Preference number: 2 (lower is better)
Translates to: TTRSISTSRPLSASSLMQMGKNW*YETLYS
Trigger: TGAATAAAGTGTCTCATACCACCAGTTCTTTCCCAT...CTGCATTAAAGAAGACGCCGAGAGCGGACGGCTTGTGCTGATGGACCTGGTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR GCA 90 bp GGAGGGGAATCACACAGCCAAGTCCCCATGCAGCACACTGAATATTTACCTCCTAATCAAGGCTTCAGTTaGTCTTTCCAAGAGACAACA +
Preference number: 2 (lower is better)
Translates to: GGESHSQVPMQHTEYLPPNQGFS*SFQETT
Trigger: TGTTGTCTCTTGGAAAGAGCAACTGAAGCCTTGATT...AGGAGGTAAATATTCAGTGTGCTGCATGGGGACTTGGCTGTGTGATTCCCCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR CCA 90 bp GGAGGGGAATCACACAGCCAAGTCCCCATGCAGCACACTGAATATTTACCTCCTCAACAAATAATCTCTTaGAGGGATTGTGAAGTAGCC +
Preference number: 2 (lower is better)
Translates to: GGESHSQVPMQHTEYLPPQQIIS*RDCEVA
Trigger: GGCTACTTCACAATCCCTCCAAGAGATTATTTGTTG...AGGAGGTAAATATTCAGTGTGCTGCATGGGGACTTGGCTGTGTGATTCCCCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR CCA 90 bp GGAGGGGAATCACACAGCCAAGTCCCCATGCAGCACACTGAATATTTACCTCCTAAGACTTTGGGCGTTTaGTTGCTTTTTATTCTTTTG +
Preference number: 2 (lower is better)
Translates to: GGESHSQVPMQHTEYLPPKTLGV*LLFILL
Trigger: CAAAAGAATAAAAAGCAACCAAACGCCCAAAGTCTT...AGGAGGTAAATATTCAGTGTGCTGCATGGGGACTTGGCTGTGTGATTCCCCTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CAA 90 bp TTAGCTGCTGCCCTCAAGCCTGTCATTAGACACACTAAAGTCCCTTaGGCACGATGTAAAGAAGAGTCTAGTATTTCTTACTCTTCTGAG +
Preference number: 2 (lower is better)
Translates to: LAAALKPVIRHTKVP*ARCKEESSISYSSE
Trigger: CTCAGAAGAGTAAGAAATACTAGACTCTTCTTTACATCGTGCCAAAGGGACTTTAGTGTGTCTAATGACAGGCTTGAGGGCAGCAGCTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR CCA 90 bp AGACACACTAAAGTCCCTTTGGCACGATGTAAAGAAGAGTCTAGTATTTCTTACTTCTGGAATGTTCTCTaGCCGCTGGGATCTGTCCAT +
Preference number: 2 (lower is better)
Translates to: RHTKVPLARCKEESSISYFWNVL*PLGSVH
Trigger: ATGGACAGATCCCAGCGGCCAGAGAACATTCCAGAA...GTAAGAAATACTAGACTCTTCTTTACATCGTGCCAAAGGGACTTTAGTGTGTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR TCA 90 bp CTTGGTAGCTATGCTTTTCCAATATTCCATAAGCATAGGATTTGTCAATGGAACCTCTTGGAGGGATTGTaGAGTAGCCTGTCAATCAAC +
Preference number: 2 (lower is better)
Translates to: LGSYAFPIFHKHRICQWNLLEGL*SSLSIN
Trigger: GTTGATTGACAGGCTACTTCACAATCCCTCCAAGAG...GTTCCATTGACAAATCCTATGCTTATGGAATATTGGAAAAGCATAGCTACCAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR GCA 90 bp CTTGGTAGCTATGCTTTTCCAATATTCCATAAGCATAGGATTTGTCAATGGAACCCTGTCAATCAACTGTaGAGTTTACACCCTTCTTCT +
Preference number: 2 (lower is better)
Translates to: LGSYAFPIFHKHRICQWNPVNQL*SLHPSS
Trigger: AGAAGAAGGGTGTAAACTGCACAGTTGATTGACAGG...GTTCCATTGACAAATCCTATGCTTATGGAATATTGGAAAAGCATAGCTACCAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CCA 72 bp TTAGCATGTAAGCGTTCTGGAATGTTCTCTGGCCGCTaGGATCTGTCCATGGTGCTGAAGGACGCCGCTCTT +
Preference number: 3 (lower is better)
Translates to: LACKRSGMFSGR*DLSMVLKDAAL
Trigger: AAGAGCGGCGTCCTTCAGCACCATGGACAGATCCCAGCGGCCAGAGAACATTCCAGAACGCTTACATGCTAA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CCA 72 bp CAGGGAGACCCAGAATCACTCCCCAGGGCAAACATTTaGAGAGGTACAACACCGGAACACAGCATGTCTGCA +
Preference number: 3 (lower is better)
Translates to: QGDPESLPRANI*RGTTPEHSMSA
Trigger: TGCAGACATGCTGTGTTCCGGTGTTGTACCTCTCCAAATGTTTGCCCTGGGGAGTGATTCTGGGTCTCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR GCA 72 bp GGTTGTGAAATGATAGCGGTAAGACAGGAACTCAATTaGCCACAACCAGGTCCATCAGCACAAGCCGTCCGC +
Preference number: 3 (lower is better)
Translates to: GCEMIAVRQELN*PQPGPSAQAVR
Trigger: GCGGACGGCTTGTGCTGATGGACCTGGTTGTGGGCAATTGAGTTCCTGTCTTACCGCTATCATTTCACAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CCA 72 bp CTACTCAGTGTGAAATGCTCAGAACCAGAGAGAAACTaGGACCTTCGTCAGGGAGACCCAGAATCACTCCCC +
Preference number: 3 (lower is better)
Translates to: LLSVKCSEPERN*DLRQGDPESLP
Trigger: GGGGAGTGATTCTGGGTCTCCCTGACGAAGGTCCCAGTTTCTCTCTGGTTCTGAGCATTTCACACTGAGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR CAA 90 bp GAGAGAAACTGGGACCTTCGTCAGGGAGACCCAGAATCACTCCCCAGGGCAAACCGAATTCCTGTATCTTaGCCCGTAATGGCTATCTAT +
Preference number: 3 (lower is better)
Translates to: ERNWDLRQGDPESLPRANRIPVS*PVMAIY
Trigger: ATAGATAGCCATTACGGGCAAAGATACAGGAATTCG...GTTTGCCCTGGGGAGTGATTCTGGGTCTCCCTGACGAAGGTCCCAGTTTCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR TCA 72 bp GAGAGGCAGGAGGATGAAGGACAAGGCTACTCAGTGTaGAATGCTCAGAACCAGAGAGAAACTGGGACCTTC +
Preference number: 3 (lower is better)
Translates to: ERQEDEGQGYSV*NAQNQRETGTF
Trigger: GAAGGTCCCAGTTTCTCTCTGGTTCTGAGCATTTCACACTGAGTAGCCTTGTCCTTCATCCTCCTGCCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR GCA 72 bp ACCTTGTTTTGTAGTGGGATTGACTCTGGGACCTACTaGTACTCTTCTGCAGGAGGCTCGACACTGAACCCA +
Preference number: 3 (lower is better)
Translates to: TLFCSGIDSGTY*YSSAGGSTLNP
Trigger: TGGGTTCAGTGTCGAGCCTCCTGCAGAAGAGTAGCAGTAGGTCCCAGAGTCAATCCCACTACAAAACAAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CCA 72 bp GAGAGGAGTCCTTCATATTCCAAGACTTGCAGCCGGTaGGGTGGAACTGTTCTGTGTTCTCAAAACATGGGC +
Preference number: 3 (lower is better)
Translates to: ERSPSYSKTCSR*GGTVLCSQNMG
Trigger: GCCCATGTTTTGAGAACACAGAACAGTTCCACCCCACCGGCTGCAAGTCTTGGAATATGAAGGACTCCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CCA 72 bp CCAGCTGTGGCATCGTATTATTGTGGTCTTAAAAGCTaGGAGGAGGCTGATGATAGCACTGGGGAGAGACGA +
Preference number: 3 (lower is better)
Translates to: PAVASYYCGLKS*EEADDSTGERR
Trigger: TCGTCTCTCCCCAGTGCTATCATCAGCCTCCTCCCAGCTTTTAAGACCACAATAATACGATGCCACAGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR CAA 90 bp AACCAGAGAGAAACTGGGACCTTCGTCAGGGAGACCCAGAATCACTCCCCAGGGCACCACAATAACACTTaGTCTTTGCTGTCTGAATAC +
Preference number: 3 (lower is better)
Translates to: NQRETGTFVRETQNHSPGHHNNT*SLLSEY
Trigger: GTATTCAGACAGCAAAGACAAAGTGTTATTGTGGTG...CCCTGGGGAGTGATTCTGGGTCTCCCTGACGAAGGTCCCAGTTTCTCTCTGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR GCA 72 bp GGTATCTGTAAAGAAATGCAACTAAAAGTGGCGGGCTaGTCCCGGTTCAGTTTCGAAGGCAATACTCCCAGA +
Preference number: 3 (lower is better)
Translates to: GICKEMQLKVAG*SRFSFEGNTPR
Trigger: TCTGGGAGTATTGCCTTCGAAACTGAACCGGGAGCAGCCCGCCACTTTTAGTTGCATTTCTTTACAGATACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CCA 72 bp ACCACAATAACACTTTGTCTTTGCTGTCTGAATACCTaGACTGTATCTGCAGCTCCACAATGGCGCCCTGCA +
Preference number: 3 (lower is better)
Translates to: TTITLCLCCLNT*TVSAAPQWRPA
Trigger: TGCAGGGCGCCATTGTGGAGCTGCAGATACAGTCCAGGTATTCAGACAGCAAAGACAAAGTGTTATTGTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR-3UTR CAA 90 bp ACACTTTGTCTTTGCTGTCTGAATACCTGGACTGTATCTGCAGCTCCACAATGGGAATCAAGGCTTCAGTaGCTCTTTCCAAGAGACAAC +
Preference number: 3 (lower is better)
Translates to: TLCLCCLNTWTVSAAPQWESRLQ*LFPRDN
Trigger: GTTGTCTCTTGGAAAGAGCAACTGAAGCCTTGATTC...CCATTGTGGAGCTGCAGATACAGTCCAGGTATTCAGACAGCAAAGACAAAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CCA 72 bp TTTAACCAAGTTACTCCCAAGCAGTTCCAAGCCTTCTaGGAAGTCTCACCTCTTTCCACTTCAGAGTGTCTT +
Preference number: 3 (lower is better)
Translates to: FNQVTPKQFQAF*EVSPLSTSECL
Trigger: AAGACACTCTGAAGTGGAAAGAGGTGAGACTTCCCAGAAGGCTTGGAACTGCTTGGGAGTAACTTGGTTAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CCA 72 bp CCCTCAAGCCTGTCATTAGACACACTAAAGTCCCTTTaGCACGATGTAAAGAAGAGTCTAGTATTTCTTACT +
Preference number: 3 (lower is better)
Translates to: PSSLSLDTLKSL*HDVKKSLVFLT
Trigger: AGTAAGAAATACTAGACTCTTCTTTACATCGTGCCAAAGGGACTTTAGTGTGTCTAATGACAGGCTTGAGGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR TCA 72 bp GTCCATACTTTCAGGCCTTTTACAAATCACAAAGTCTaGCAAATGACAGAGACTATAGGTCAGGTTAGGTTT +
Preference number: 3 (lower is better)
Translates to: VHTFRPFTNHKV*QMTETIGQVRF
Trigger: AAACCTAACCTGACCTATAGTCTCTGTCATTTGTCAGACTTTGTGATTTGTAAAAGGCCTGAAAGTATGGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR TCA 72 bp GTTATAGCTGTTTTTGTTATGAAACAGCAAATTGCCTaGAGCAGAGAGGTTCAAACAATGTTGCACATTTCC +
Preference number: 3 (lower is better)
Translates to: VIAVFVMKQQIA*SREVQTMLHIS
Trigger: GGAAATGTGCAACATTGTTTGAACCTCTCTGCTTCAGGCAATTTGCTGTTTCATAACAAAAACAGCTATAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR TCA 72 bp ACTTATATTTCAACAAATAATCTCTTGGAGGGATTGTaGAGTAGCCTGTCAATCAACTGTGCAGTTTACACC +
Preference number: 3 (lower is better)
Translates to: TYISTNNLLEGL*SSLSINCAVYT
Trigger: GGTGTAAACTGCACAGTTGATTGACAGGCTACTTCACAATCCCTCCAAGAGATTATTTGTTGAAATATAAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CCA 72 bp TCAATGGAACCACTTATATTTCAACAAATAATCTCTTaGAGGGATTGTGAAGTAGCCTGTCAATCAACTGTG +
Preference number: 3 (lower is better)
Translates to: SMEPLIFQQIIS*RDCEVACQSTV
Trigger: CACAGTTGATTGACAGGCTACTTCACAATCCCTCCAAGAGATTATTTGTTGAAATATAAGTGGTTCCATTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR GCA 72 bp AAGTGTTATAGCTGTTTTTGTTATGAAACAGCAAATTaGCTGAAGCAGAGAGGTTCAAACAATGTTGCACAT +
Preference number: 3 (lower is better)
Translates to: KCYSCFCYETAN*LKQRGSNNVAH
Trigger: ATGTGCAACATTGTTTGAACCTCTCTGCTTCAGGCAATTTGCTGTTTCATAACAAAAACAGCTATAACACTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CCA 90 bp ACCCACGTATGCGGAGGGGAATCACACAGCCAAGTCCCCATGCAGCACACTGAAGGGGGCCGCTCCTTCTaGCTGCCGAGGCTGCTGTAC +
Preference number: 4 (lower is better)
Translates to: THVCGGESHSQVPMQHTEGGRSF*LPRLLY
Trigger: GTACAGCAGCCTCGGCAGCCAGAAGGAGCGGCCCCC...TTCAGTGTGCTGCATGGGGACTTGGCTGTGTGATTCCCCTCCGCATACGTGGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR TCA 90 bp AACCAGAGAGAAACTGGGACCTTCGTCAGGGAGACCCAGAATCACTCCCCAGGGACGCAGCAGATGCCCTaGGCTGGTCACCAGGGCGCA +
Preference number: 4 (lower is better)
Translates to: NQRETGTFVRETQNHSPGTQQMP*AGHQGA
Trigger: TGCGCCCTGGTGACCAGCTCAGGGCATCTGCTGCGT...CCCTGGGGAGTGATTCTGGGTCTCCCTGACGAAGGTCCCAGTTTCTCTCTGGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR TCA 90 bp ACCCACGTATGCGGAGGGGAATCACACAGCCAAGTCCCCATGCAGCACACTGAATGCCCTGGCTCACATTaGGCAGGTCATGGCGGTTGC +
Preference number: 4 (lower is better)
Translates to: THVCGGESHSQVPMQHTECPGSH*AGHGGC
Trigger: GCAACCGCCATGACCTGCTCAATGTGAGCCAGGGCA...TTCAGTGTGCTGCATGGGGACTTGGCTGTGTGATTCCCCTCCGCATACGTGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CCA 90 bp TACTCCCAGAGACCTGGGGTGTTCCTAGCCATGGCAGTGTCACTGAATCAAGGCGCAGATGCCCTGAGCTaGTCACCAGGGCGCAATCCT +
Preference number: 4 (lower is better)
Translates to: YSQRPGVFLAMAVSLNQGADALS*SPGRNP
Trigger: AGGATTGCGCCCTGGTGACCAGCTCAGGGCATCTGC...GCCTTGATTCAGTGACACTGCCATGGCTAGGAACACCCCAGGTCTCTGGGAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR TCA 90 bp TACCCCGGAACCACTGGGGTCTGTAAGCAGGGTTGTGTGTCCTGTGTATGTTTATGGGGCCCCAGAAGATaGACACGGTGCCCTGGCTCA +
Preference number: 4 (lower is better)
Translates to: YPGTTGVCKQGCVSCVCLWGPRR*TRCPGS
Trigger: TGAGCCAGGGCACCGTGTTCATCTTCTGGGGCCCCA...TAAACATACACAGGACACACAACCCTGCTTACAGACCCCAGTGGTTCCGGGGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR TCA 90 bp AACCAGAGAGAAACTGGGACCTTCGTCAGGGAGACCCAGAATCACTCCCCAGGGGAGCAATTGTCATGGTaGACCAGCCAGTGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: NQRETGTFVRETQNHSPGEQLSW*TSQCSA
Trigger: GGCTGAGCACTGGCTGGTTCACCATGACAATTGCTC...CCCTGGGGAGTGATTCTGGGTCTCCCTGACGAAGGTCCCAGTTTCTCTCTGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR GCA 90 bp GGAGGGGAATCACACAGCCAAGTCCCCATGCAGCACACTGAATATTTACCTCCTGCCGCTCCTTCTGGCTaGCGAGGCTGCTGTACACGA +
Preference number: 4 (lower is better)
Translates to: GGESHSQVPMQHTEYLPPAAPSG*RGCCTR
Trigger: TCGTGTACAGCAGCCTCGGCAGCCAGAAGGAGCGGC...AGGAGGTAAATATTCAGTGTGCTGCATGGGGACTTGGCTGTGTGATTCCCCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CCA 90 bp AACCAGAGAGAAACTGGGACCTTCGTCAGGGAGACCCAGAATCACTCCCCAGGGACATTGAGCAGGTCATaGCGGTTGCGGAGGATCCTC +
Preference number: 4 (lower is better)
Translates to: NQRETGTFVRETQNHSPGTLSRS*RLRRIL
Trigger: GAGGATCCTCCGCAACCGCCATGACCTGCTCAATGT...CCCTGGGGAGTGATTCTGGGTCTCCCTGACGAAGGTCCCAGTTTCTCTCTGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CCA 90 bp GGAGGGGAATCACACAGCCAAGTCCCCATGCAGCACACTGAATATTTACCTCCTAGGTTGTTGTACGCCTaGCCCTTGCCATCCCGGCGC +
Preference number: 4 (lower is better)
Translates to: GGESHSQVPMQHTEYLPPRLLYA*PLPSRR
Trigger: GCGCCGGGATGGCAAGGGCCAGGCGTACAACAACCT...AGGAGGTAAATATTCAGTGTGCTGCATGGGGACTTGGCTGTGTGATTCCCCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR GCA 90 bp TACCCCGGAACCACTGGGGTCTGTAAGCAGGGTTGTGTGTCCTGTGTATGTTTACTGCTCTCCACAAGCTaGGTGCTGCCAGTCGCGGTT +
Preference number: 4 (lower is better)
Translates to: YPGTTGVCKQGCVSCVCLLLSTS*VLPVAV
Trigger: AACCGCGACTGGCAGCACGCAGCTTGTGGAGAGCAG...TAAACATACACAGGACACACAACCCTGCTTACAGACCCCAGTGGTTCCGGGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR GCA 90 bp AGGCAATACTCCCAGAGACCTGGGGTGTTCCTAGCCATGGCAGTGTCACTGAATCTGGATGCTGGAATGTaGGATGACCCGCAGGCTCGT +
Preference number: 4 (lower is better)
Translates to: RQYSQRPGVFLAMAVSLNLDAGM*DDPQAR
Trigger: ACGAGCCTGCGGGTCATCGCACATTCCAGCATCCAG...ATTCAGTGACACTGCCATGGCTAGGAACACCCCAGGTCTCTGGGAGTATTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CCA 90 bp ACCCACGTATGCGGAGGGGAATCACACAGCCAAGTCCCCATGCAGCACACTGAATTGCGGAGGATCCTCTaGATGCTGGAATGTGCGATG +
Preference number: 4 (lower is better)
Translates to: THVCGGESHSQVPMQHTELRRIL*MLECAM
Trigger: CATCGCACATTCCAGCATCCAGAGGATCCTCCGCAA...TTCAGTGTGCTGCATGGGGACTTGGCTGTGTGATTCCCCTCCGCATACGTGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CCA 90 bp AGGCAATACTCCCAGAGACCTGGGGTGTTCCTAGCCATGGCAGTGTCACTGAATGTCCCTGCAGAAGTCTaGGGGCACCATGCCGTAAAC +
Preference number: 4 (lower is better)
Translates to: RQYSQRPGVFLAMAVSLNVPAEV*GHHAVN
Trigger: GTTTACGGCATGGTGCCCCCAGACTTCTGCAGGGAC...ATTCAGTGACACTGCCATGGCTAGGAACACCCCAGGTCTCTGGGAGTATTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CCA 90 bp GAGAGAAACTGGGACCTTCGTCAGGGAGACCCAGAATCACTCCCCAGGGCAAACTACGGAAGGATGCTTTaGGTCCCTGCAGAAGTCTGG +
Preference number: 4 (lower is better)
Translates to: ERNWDLRQGDPESLPRANYGRML*VPAEVW
Trigger: CCAGACTTCTGCAGGGACCCAAAGCATCCTTCCGTA...GTTTGCCCTGGGGAGTGATTCTGGGTCTCCCTGACGAAGGTCCCAGTTTCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR TCA 90 bp GAGAGAAACTGGGACCTTCGTCAGGGAGACCCAGAATCACTCCCCAGGGCAAACTTGCGTCCTCGCTCGTaGGAGAGGTACATTGTACAT +
Preference number: 4 (lower is better)
Translates to: ERNWDLRQGDPESLPRANLRPRS*ERYIVH
Trigger: ATGTACAATGTACCTCTCTCACGAGCGAGGACGCAA...GTTTGCCCTGGGGAGTGATTCTGGGTCTCCCTGACGAAGGTCCCAGTTTCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR TCA 90 bp GAGAGAAACTGGGACCTTCGTCAGGGAGACCCAGAATCACTCCCCAGGGCAAACATGATTCACAGCGGGTaGTTCTGGTTTCCAGTCTGG +
Preference number: 4 (lower is better)
Translates to: ERNWDLRQGDPESLPRANMIHSG*FWFPVW
Trigger: CCAGACTGGAAACCAGAATCACCCGCTGTGAATCAT...GTTTGCCCTGGGGAGTGATTCTGGGTCTCCCTGACGAAGGTCCCAGTTTCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR GCA 90 bp TGTGCGCTAAAAACCCAGGCAATCTGTAACTCTCCTCTGGCCCCACCTCCTCAGCCAGGGCGCAATCCTTaGAATGCATTTTCAGGGGCT +
Preference number: 4 (lower is better)
Translates to: CALKTQAICNSPLAPPPQPGRNP*NAFSGA
Trigger: AGCCCCTGAAAATGCATTGCAAGGATTGCGCCCTGG...CTGAGGAGGTGGGGCCAGAGGAGAGTTACAGATTGCCTGGGTTTTTAGCGCACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR GCA 90 bp AGGCAATACTCCCAGAGACCTGGGGTGTTCCTAGCCATGGCAGTGTCACTGAATAAGAGCTCATCGAACTaGAGCATCCTGTGGCGCGTG +
Preference number: 4 (lower is better)
Translates to: RQYSQRPGVFLAMAVSLNKSSSN*SILWRV
Trigger: CACGCGCCACAGGATGCTGCAGTTCGATGAGCTCTT...ATTCAGTGACACTGCCATGGCTAGGAACACCCCAGGTCTCTGGGAGTATTGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR GCA 90 bp CCCGGAACCACTGGGGTCTGTAAGCAGGGTTGTGTGTCCTGTGTATGTTTAATGGGTGATGACTGCCCTTaGGTCCTCGCTCGTGAGAGA +
Preference number: 4 (lower is better)
Translates to: PGTTGVCKQGCVSCVCLMGDDCP*VLARER
Trigger: TCTCTCACGAGCGAGGACGCAAGGGCAGTCATCACC...CATTAAACATACACAGGACACACAACCCTGCTTACAGACCCCAGTGGTTCCGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CCA 90 bp CACAACCAGGTCCATCAGCACAAGCCGTCCGCTCTCGGCGTCTTCTTTAATGCAATGAACACGGTGCCCTaGCTCACATTGAGCAGGTCA +
Preference number: 4 (lower is better)
Translates to: HNQVHQHKPSALGVFFNAMNTVP*LTLSRS
Trigger: TGACCTGCTCAATGTGAGCCAGGGCACCGTGTTCAT...TGCATTAAAGAAGACGCCGAGAGCGGACGGCTTGTGCTGATGGACCTGGTTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR GCA 90 bp TACTCCCAGAGACCTGGGGTGTTCCTAGCCATGGCAGTGTCACTGAATCAAGGCGCGCAATCCTTGCAATaGATTTTCAGGGGCTTGTGG +
Preference number: 4 (lower is better)
Translates to: YSQRPGVFLAMAVSLNQGAQSLQ*IFRGLW
Trigger: CCACAAGCCCCTGAAAATGCATTGCAAGGATTGCGC...GCCTTGATTCAGTGACACTGCCATGGCTAGGAACACCCCAGGTCTCTGGGAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CCA 90 bp TTGTCTTTGCTGTCTGAATACCTGGACTGTATCTGCAGCTCCACAATGGCGCCCATAACACACTCTGTCTaGTCGATGTGGGGGCCCTGC +
Preference number: 4 (lower is better)
Translates to: LSLLSEYLDCICSSTMAPITHSV*SMWGPC
Trigger: GCAGGGCCCCCACATCGACCAGACAGAGTGTGTTAT...GGGCGCCATTGTGGAGCTGCAGATACAGTCCAGGTATTCAGACAGCAAAGACAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CCA 90 bp CCCGGAACCACTGGGGTCTGTAAGCAGGGTTGTGTGTCCTGTGTATGTTTAATGAACTGCAGCATCCTGTaGCGCGTGATCATGAAGGCC +
Preference number: 4 (lower is better)
Translates to: PGTTGVCKQGCVSCVCLMNCSIL*RVIMKA
Trigger: GGCCTTCATGATCACGCGCCACAGGATGCTGCAGTT...CATTAAACATACACAGGACACACAACCCTGCTTACAGACCCCAGTGGTTCCGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR TCA 90 bp GAGAGAAACTGGGACCTTCGTCAGGGAGACCCAGAATCACTCCCCAGGGCAAACTCTGGTTGGAAAAAGTaGATGTTGAATGTCCGTGCC +
Preference number: 4 (lower is better)
Translates to: ERNWDLRQGDPESLPRANSGWKK*MLNVRA
Trigger: GGCACGGACATTCAACATTCACTTTTTCCAACCAGA...GTTTGCCCTGGGGAGTGATTCTGGGTCTCCCTGACGAAGGTCCCAGTTTCTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR GCA 90 bp TTGTCTTTGCTGTCTGAATACCTGGACTGTATCTGCAGCTCCACAATGGCGCCCAGTCTGGGGGCACCATaGCGTAAACATCGATCCTGT +
Preference number: 4 (lower is better)
Translates to: LSLLSEYLDCICSSTMAPSLGAP*RKHRSC
Trigger: ACAGGATCGATGTTTACGGCATGGTGCCCCCAGACT...GGGCGCCATTGTGGAGCTGCAGATACAGTCCAGGTATTCAGACAGCAAAGACAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CCA 90 bp CCCGGAACCACTGGGGTCTGTAAGCAGGGTTGTGTGTCCTGTGTATGTTTAATGTGCTCAGCCAAGTGTTaGAGATCTTCCTGTCTTTGC +
Preference number: 4 (lower is better)
Translates to: PGTTGVCKQGCVSCVCLMCSAKC*RSSCLC
Trigger: GCAAAGACAGGAAGATCTCCAACACTTGGCTGAGCA...CATTAAACATACACAGGACACACAACCCTGCTTACAGACCCCAGTGGTTCCGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CAA 72 bp AGGGGCACATCTACCATACCTTGTTTTGTAGTGGGATaGACTCTGGGACCTACTGCTACTCTTCTGCAGGAG +
Preference number: 4 (lower is better)
Translates to: RGTSTIPCFVVG*TLGPTATLLQE
Trigger: CTCCTGCAGAAGAGTAGCAGTAGGTCCCAGAGTCAATCCCACTACAAAACAAGGTATGGTAGATGTGCCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR GCA 90 bp TTGTCTTTGCTGTCTGAATACCTGGACTGTATCTGCAGCTCCACAATGGCGCCCAATGTTGAATGTCCGTaGCCAGTTCTTAAACACCCG +
Preference number: 4 (lower is better)
Translates to: LSLLSEYLDCICSSTMAPNVECP*PVLKHP
Trigger: CGGGTGTTTAAGAACTGGGCACGGACATTCAACATT...GGGCGCCATTGTGGAGCTGCAGATACAGTCCAGGTATTCAGACAGCAAAGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CCA 90 bp TTAGATTTGCAAGAGGAACTCGGGACTTTATCCTACATTCTAAGGAAAGGGGAAGCCCATAGCCTCGGGTaGGGGCATCATTCATGCGGA +
Preference number: 4 (lower is better)
Translates to: LDLQEELGTLSYILRKGEAHSLG*GHHSCG
Trigger: TCCGCATGAATGATGCCCCCACCCGAGGCTATGGGC...TTCCCCTTTCCTTAGAATGTAGGATAAAGTCCCGAGTTCCTCTTGCAAATCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CAA 72 bp TGTTGGAATGACCGATCCAACACTGAGGCCAGAACATaGAGGGCAGAAGGATCTGGAGAAGTAGATGGTGAA +
Preference number: 4 (lower is better)
Translates to: CWNDRSNTEART*RAEGSGEVDGE
Trigger: TTCACCATCTACTTCTCCAGATCCTTCTGCCCTCAATGTTCTGGCCTCAGTGTTGGATCGGTCATTCCAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CCA 90 bp GAAAATCATTGGAGATGTGCTCTTCGGAAGCATGTCCATACTTTCAGGCCTTTTAGCCGAGGCAGCACTTaGCTAAGGAGCTGTAGGTTG +
Preference number: 4 (lower is better)
Translates to: ENHWRCALRKHVHTFRPFSRGST*LRSCRL
Trigger: CAACCTACAGCTCCTTAGCCAAGTGCTGCCTCGGCT...AAAAGGCCTGAAAGTATGGACATGCTTCCGAAGAGCACATCTCCAATGATTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CAA 72 bp AAGCAGGGTTGTGTGTCCTGTGTATGTTTAATGGTGTaGGGTGGCATTACGTCGGACGGTTGTGAAATGATA +
Preference number: 4 (lower is better)
Translates to: KQGCVSCVCLMV*GGITSDGCEMI
Trigger: TATCATTTCACAACCGTCCGACGTAATGCCACCCAACACCATTAAACATACACAGGACACACAACCCTGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR TCA 90 bp AGACACACTAAAGTCCCTTTGGCACGATGTAAAGAAGAGTCTAGTATTTCTTACTGCCAGTCTCCTGCTTaGAGAGCTCATCGAACTGCA +
Preference number: 4 (lower is better)
Translates to: RHTKVPLARCKEESSISYCQSPA*RAHRTA
Trigger: TGCAGTTCGATGAGCTCTTCAAGCAGGAGACTGGCA...GTAAGAAATACTAGACTCTTCTTTACATCGTGCCAAAGGGACTTTAGTGTGTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
3UTR CAA 72 bp GCCCTCAAGCCTGTCATTAGACACACTAAAGTCCCTTaGGCACGATGTAAAGAAGAGTCTAGTATTTCTTAC +
Preference number: 4 (lower is better)
Translates to: ALKPVIRHTKVP*ARCKEESSISY
Trigger: GTAAGAAATACTAGACTCTTCTTTACATCGTGCCAAAGGGACTTTAGTGTGTCTAATGACAGGCTTGAGGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR GCA 90 bp AGACACACTAAAGTCCCTTTGGCACGATGTAAAGAAGAGTCTAGTATTTCTTACTCTTTGCCAGTCTCCTaGTTGAAGAGCTCATCGAAC +
Preference number: 4 (lower is better)
Translates to: RHTKVPLARCKEESSISYSLPVS*LKSSSN
Trigger: GTTCGATGAGCTCTTCAAGCAGGAGACTGGCAAAGA...GTAAGAAATACTAGACTCTTCTTTACATCGTGCCAAAGGGACTTTAGTGTGTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 90 bp TGCGTGCTGCCAGTCGCGGTTGCCGCCTGCTGCTGCTGCTGCTGCTaGTGCTGCTGCTGCGGGGGCCGCTCCTTCTGGCTGCCGAGGCTG +
Preference number: 5 (lower is better)
Translates to: CVLPVAVAACCCCCC*CCCCGGRSFWLPRL
Trigger: CAGCCTCGGCAGCCAGAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGCAACCGCGACTGGCAGCACGCA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 90 bp AGCTGCGTGCTGCCAGTCGCGGTTGCCGCCTGCTGCTGCTGCTGCTaGTGCTGCTGCTGCTGCGGGGGCCGCTCCTTCTGGCTGCCGAGG +
Preference number: 5 (lower is better)
Translates to: SCVLPVAVAACCCCC*CCCCCGGRSFWLPR
Trigger: CCTCGGCAGCCAGAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGCAACCGCGACTGGCAGCACGCAGCT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 90 bp ACAAGCTGCGTGCTGCCAGTCGCGGTTGCCGCCTGCTGCTGCTGCTaGTGCTGCTGCTGCTGCTGCGGGGGCCGCTCCTTCTGGCTGCCG +
Preference number: 5 (lower is better)
Translates to: TSCVLPVAVAACCCC*CCCCCCGGRSFWLP
Trigger: CGGCAGCCAGAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGCAACCGCGACTGGCAGCACGCAGCTTGT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 90 bp GGACTGCTCTCCACAAGCTGCGTGCTGCCAGTCGCGGTTGCCGCCTaGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGGGGGCCGCTCC +
Preference number: 5 (lower is better)
Translates to: GLLSTSCVLPVAVAA*CCCCCCCCCCGGRS
Trigger: GGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGCAACCGCGACTGGCAGCACGCAGCTTGTGGAGAGCAGTCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 90 bp TCCACAAGCTGCGTGCTGCCAGTCGCGGTTGCCGCCTGCTGCTGCTaGTGCTGCTGCTGCTGCTGCTGCGGGGGCCGCTCCTTCTGGCTG +
Preference number: 5 (lower is better)
Translates to: STSCVLPVAVAACCC*CCCCCCCGGRSFWL
Trigger: CAGCCAGAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGCAACCGCGACTGGCAGCACGCAGCTTGTGGA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 90 bp CTCTCCACAAGCTGCGTGCTGCCAGTCGCGGTTGCCGCCTGCTGCTaGTGCTGCTGCTGCTGCTGCTGCTGCGGGGGCCGCTCCTTCTGG +
Preference number: 5 (lower is better)
Translates to: LSTSCVLPVAVAACC*CCCCCCCCGGRSFW
Trigger: CCAGAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGCAACCGCGACTGGCAGCACGCAGCTTGTGGAGAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 90 bp CTGCTCTCCACAAGCTGCGTGCTGCCAGTCGCGGTTGCCGCCTGCTaGTGCTGCTGCTGCTGCTGCTGCTGCTGCGGGGGCCGCTCCTTC +
Preference number: 5 (lower is better)
Translates to: LLSTSCVLPVAVAAC*CCCCCCCCCGGRSF
Trigger: GAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGCAACCGCGACTGGCAGCACGCAGCTTGTGGAGAGCAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS TCA 90 bp GGTCATGGCGGTTGCGGAGGATCCTCTGGATGCTGGAATGTGCGATaGCCCGCAGGCTCGTGCGGTTGCCCACGTCAAGCCCATAGCCTC +
Preference number: 5 (lower is better)
Translates to: GHGGCGGSSGCWNVR*PAGSCGCPRQAHSL
Trigger: GAGGCTATGGGCTTGACGTGGGCAACCGCACGAGCCTGCGGGTCATCGCACATTCCAGCATCCAGAGGATCCTCCGCAACCGCCATGACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CCA 90 bp CCCTGGCTCACATTGAGCAGGTCATGGCGGTTGCGGAGGATCCTCTaGATGCTGGAATGTGCGATGACCCGCAGGCTCGTGCGGTTGCCC +
Preference number: 5 (lower is better)
Translates to: PWLTLSRSWRLRRIL*MLECAMTRRLVRLP
Trigger: GGGCAACCGCACGAGCCTGCGGGTCATCGCACATTCCAGCATCCAGAGGATCCTCCGCAACCGCCATGACCTGCTCAATGTGAGCCAGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CAA 90 bp CACAACCAGGTCCATCAGCACAAGCCGTCCGCTCTCGGCGTCTTCTTTAATGCATGCTGCCAGTCGCGGTaGCCGCCTGCTGCTGCTGCT +
Preference number: 5 (lower is better)
Translates to: HNQVHQHKPSALGVFFNACCQSR*PPAAAA
Trigger: AGCAGCAGCAGCAGGCGGCAACCGCGACTGGCAGCA...TGCATTAAAGAAGACGCCGAGAGCGGACGGCTTGTGCTGATGGACCTGGTTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS TCA 90 bp TGTCTGGTCGATGTGGGGGCCCTGCTGACTACGCAGCAGATGCCCTaGGCTGGTCACCAGGGCGCAATCCTTGCAATGCATTTTCAGGGG +
Preference number: 5 (lower is better)
Translates to: CLVDVGALLTTQQMP*AGHQGAILAMHFQG
Trigger: CCCCTGAAAATGCATTGCAAGGATTGCGCCCTGGTGACCAGCTCAGGGCATCTGCTGCGTAGTCAGCAGGGCCCCCACATCGACCAGACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CCA 90 bp CCCCAGAAGATGAACACGGTGCCCTGGCTCACATTGAGCAGGTCATaGCGGTTGCGGAGGATCCTCTGGATGCTGGAATGTGCGATGACC +
Preference number: 5 (lower is better)
Translates to: PQKMNTVPWLTLSRS*RLRRILWMLECAMT
Trigger: GGTCATCGCACATTCCAGCATCCAGAGGATCCTCCGCAACCGCCATGACCTGCTCAATGTGAGCCAGGGCACCGTGTTCATCTTCTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CCA 90 bp ATCCTGTGGCGCGTGATCATGAAGGCCTTCAGCCGAGGCAGCACTTaGCTAAGGAGCTGTAGGTTGTTGTACGCCTGGCCCTTGCCATCC +
Preference number: 5 (lower is better)
Translates to: ILWRVIMKAFSRGST*LRSCRLLYAWPLPS
Trigger: GGATGGCAAGGGCCAGGCGTACAACAACCTACAGCTCCTTAGCCAAGTGCTGCCTCGGCTGAAGGCCTTCATGATCACGCGCCACAGGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 90 bp CGCAGCAGATGCCCTGAGCTGGTCACCAGGGCGCAATCCTTGCAATaGATTTTCAGGGGCTTGTGGTCTGCTACACCGAGGTATCCTTCG +
Preference number: 5 (lower is better)
Translates to: RSRCPELVTRAQSLQ*IFRGLWSATPRYPS
Trigger: CGAAGGATACCTCGGTGTAGCAGACCACAAGCCCCTGAAAATGCATTGCAAGGATTGCGCCCTGGTGACCAGCTCAGGGCATCTGCTGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CAA 90 bp CACAACCAGGTCCATCAGCACAAGCCGTCCGCTCTCGGCGTCTTCTTTAATGCAGTGCCCTGGCTCACATaGAGCAGGTCATGGCGGTTG +
Preference number: 5 (lower is better)
Translates to: HNQVHQHKPSALGVFFNAVPWLT*SRSWRL
Trigger: CAACCGCCATGACCTGCTCAATGTGAGCCAGGGCAC...TGCATTAAAGAAGACGCCGAGAGCGGACGGCTTGTGCTGATGGACCTGGTTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 90 bp GACTACGCAGCAGATGCCCTGAGCTGGTCACCAGGGCGCAATCCTTaGAATGCATTTTCAGGGGCTTGTGGTCTGCTACACCGAGGTATC +
Preference number: 5 (lower is better)
Translates to: DYAADALSWSPGRNP*NAFSGACGLLHRGI
Trigger: GATACCTCGGTGTAGCAGACCACAAGCCCCTGAAAATGCATTGCAAGGATTGCGCCCTGGTGACCAGCTCAGGGCATCTGCTGCGTAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CCA 90 bp TTGCCAGTCTCCTGCTTGAAGAGCTCATCGAACTGCAGCATCCTGTaGCGCGTGATCATGAAGGCCTTCAGCCGAGGCAGCACTTGGCTA +
Preference number: 5 (lower is better)
Translates to: LPVSCLKSSSNCSIL*RVIMKAFSRGSTWL
Trigger: TAGCCAAGTGCTGCCTCGGCTGAAGGCCTTCATGATCACGCGCCACAGGATGCTGCAGTTCGATGAGCTCTTCAAGCAGGAGACTGGCAA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 90 bp ATCTTCCTGTCTTTGCCAGTCTCCTGCTTGAAGAGCTCATCGAACTaGAGCATCCTGTGGCGCGTGATCATGAAGGCCTTCAGCCGAGGC +
Preference number: 5 (lower is better)
Translates to: IFLSLPVSCLKSSSN*SILWRVIMKAFSRG
Trigger: GCCTCGGCTGAAGGCCTTCATGATCACGCGCCACAGGATGCTGCAGTTCGATGAGCTCTTCAAGCAGGAGACTGGCAAAGACAGGAAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CAA 90 bp ACAACCAGGTCCATCAGCACAAGCCGTCCGCTCTCGGCGTCTTCTTTAATGCAGACCAGGGCGCAATCCTaGCAATGCATTTTCAGGGGC +
Preference number: 5 (lower is better)
Translates to: TTRSISTSRPLSASSLMQTRAQS*QCIFRG
Trigger: GCCCCTGAAAATGCATTGCAAGGATTGCGCCCTGGT...CTGCATTAAAGAAGACGCCGAGAGCGGACGGCTTGTGCTGATGGACCTGGTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CAA 90 bp ACCCACGTATGCGGAGGGGAATCACACAGCCAAGTCCCCATGCAGCACACTGAATTGCCAGTCTCCTGCTaGAAGAGCTCATCGAACTGC +
Preference number: 5 (lower is better)
Translates to: THVCGGESHSQVPMQHTELPVSC*KSSSNC
Trigger: GCAGTTCGATGAGCTCTTCAAGCAGGAGACTGGCAA...TTCAGTGTGCTGCATGGGGACTTGGCTGTGTGATTCCCCTCCGCATACGTGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CAA 90 bp ACCTGGGGTGTTCCTAGCCATGGCAGTGTCACTGAATCAAGGCTTCAGTTGCTCCTAAGGAGCTGTAGGTaGTTGTACGCCTGGCCCTTG +
Preference number: 5 (lower is better)
Translates to: TWGVPSHGSVTESRLQLLLRSCR*LYAWPL
Trigger: CAAGGGCCAGGCGTACAACAACCTACAGCTCCTTAG...GAGCAACTGAAGCCTTGATTCAGTGACACTGCCATGGCTAGGAACACCCCAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CAA 90 bp AGGCAATACTCCCAGAGACCTGGGGTGTTCCTAGCCATGGCAGTGTCACTGAATGTACGGAAGGATGCTTaGGGTCCCTGCAGAAGTCTG +
Preference number: 5 (lower is better)
Translates to: RQYSQRPGVFLAMAVSLNVRKDA*GPCRSL
Trigger: CAGACTTCTGCAGGGACCCAAAGCATCCTTCCGTAC...ATTCAGTGACACTGCCATGGCTAGGAACACCCCAGGTCTCTGGGAGTATTGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CAA 90 bp GAGAGAAACTGGGACCTTCGTCAGGGAGACCCAGAATCACTCCCCAGGGCAAACCGTGAGAGAGGTACATaGTACATTCATCGGGTCCTG +
Preference number: 5 (lower is better)
Translates to: ERNWDLRQGDPESLPRANRERGT*YIHRVL
Trigger: CAGGACCCGATGAATGTACAATGTACCTCTCTCACG...GTTTGCCCTGGGGAGTGATTCTGGGTCTCCCTGACGAAGGTCCCAGTTTCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 90 bp AAGGCTCATAGTAATGATAGGGTACGGAAGGATGCTTTGGGTCCCTaGAGAAGTCTGGGGGCACCATGCCGTAAACATCGATCCTGTCAC +
Preference number: 5 (lower is better)
Translates to: KAHSNDRVRKDALGP*RSLGAPCRKHRSCH
Trigger: GTGACAGGATCGATGTTTACGGCATGGTGCCCCCAGACTTCTGCAGGGACCCAAAGCATCCTTCCGTACCCTATCATTACTATGAGCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS TCA 90 bp GCGTCCTCGCTCGTGAGAGAGGTACATTGTACATTCATCGGGTCCTaGAGGCTCATAGTAATGATAGGGTACGGAAGGATGCTTTGGGTC +
Preference number: 5 (lower is better)
Translates to: ASSLVREVHCTFIGS*RLIVMIGYGRMLWV
Trigger: GACCCAAAGCATCCTTCCGTACCCTATCATTACTATGAGCCTTCAGGACCCGATGAATGTACAATGTACCTCTCTCACGAGCGAGGACGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CAA 90 bp ACACTTTGTCTTTGCTGTCTGAATACCTGGACTGTATCTGCAGCTCCACAATGGAGGAGCTGTAGGTTGTaGTACGCCTGGCCCTTGCCA +
Preference number: 5 (lower is better)
Translates to: TLCLCCLNTWTVSAAPQWRSCRL*YAWPLP
Trigger: TGGCAAGGGCCAGGCGTACAACAACCTACAGCTCCT...CCATTGTGGAGCTGCAGATACAGTCCAGGTATTCAGACAGCAAAGACAAAGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CAA 90 bp TTAGATTTGCAAGAGGAACTCGGGACTTTATCCTACATTCTAAGGAAAGGGGAAAGCAGGTCATGGCGGTaGCGGAGGATCCTCTGGATG +
Preference number: 5 (lower is better)
Translates to: LDLQEELGTLSYILRKGESRSWR*RRILWM
Trigger: CATCCAGAGGATCCTCCGCAACCGCCATGACCTGCT...TTCCCCTTTCCTTAGAATGTAGGATAAAGTCCCGAGTTCCTCTTGCAAATCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS-3UTR CAA 90 bp TACTCCCAGAGACCTGGGGTGTTCCTAGCCATGGCAGTGTCACTGAATCAAGGCTGGTTTCCAGTCTGGTaGGAAAAAGTGAATGTTGAA +
Preference number: 5 (lower is better)
Translates to: YSQRPGVFLAMAVSLNQGWFPVW*EKVNVE
Trigger: TTCAACATTCACTTTTTCCAACCAGACTGGAAACCA...GCCTTGATTCAGTGACACTGCCATGGCTAGGAACACCCCAGGTCTCTGGGAGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 90 bp TTCTGGTTTCCAGTCTGGTTGGAAAAAGTGAATGTTGAATGTCCGTaGCCAGTTCTTAAACACCCGTTTCTCTGTAATGAAACGGTGATG +
Preference number: 5 (lower is better)
Translates to: FWFPVWLEKVNVECP*PVLKHPFLCNETVM
Trigger: CATCACCGTTTCATTACAGAGAAACGGGTGTTTAAGAACTGGGCACGGACATTCAACATTCACTTTTTCCAACCAGACTGGAAACCAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 72 bp GCGGTTGCCGCCTGCTGCTGCTGCTGCTGCTGCTGCTaGTGCTGCGGGGGCCGCTCCTTCTGGCTGCCGAGG +
Preference number: 6 (lower is better)
Translates to: AVAACCCCCCCC*CCGGRSFWLPR
Trigger: CCTCGGCAGCCAGAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGCAACCGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 72 bp GTCGCGGTTGCCGCCTGCTGCTGCTGCTGCTGCTGCTaGTGCTGCTGCGGGGGCCGCTCCTTCTGGCTGCCG +
Preference number: 6 (lower is better)
Translates to: VAVAACCCCCCC*CCCGGRSFWLP
Trigger: CGGCAGCCAGAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGCAACCGCGAC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 72 bp TGCGTGCTGCCAGTCGCGGTTGCCGCCTGCTGCTGCTaGTGCTGCTGCTGCTGCTGCTGCGGGGGCCGCTCC +
Preference number: 6 (lower is better)
Translates to: CVLPVAVAACCC*CCCCCCCGGRS
Trigger: GGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGCAACCGCGACTGGCAGCACGCA
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 72 bp GTTGCCGCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTaGTGCGGGGGCCGCTCCTTCTGGCTGCCGAGGCTG +
Preference number: 6 (lower is better)
Translates to: VAACCCCCCCCC*CGGRSFWLPRL
Trigger: CAGCCTCGGCAGCCAGAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGCAAC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 72 bp GTGCTGCCAGTCGCGGTTGCCGCCTGCTGCTGCTGCTaGTGCTGCTGCTGCTGCTGCGGGGGCCGCTCCTTC +
Preference number: 6 (lower is better)
Translates to: VLPVAVAACCCC*CCCCCCGGRSF
Trigger: GAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGCAACCGCGACTGGCAGCAC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 72 bp GGCTTGTGGTCTGCTACACCGAGGTATCCTTCGAGCTaGCGGGGTCCTGCGGGGGCGGTTCTACGTGGCTGG +
Preference number: 6 (lower is better)
Translates to: GLWSATPRYPSS*RGPAGAVLRGW
Trigger: CCAGCCACGTAGAACCGCCCCCGCAGGACCCCGGCAGCTCGAAGGATACCTCGGTGTAGCAGACCACAAGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS TCA 72 bp GGTTGCGGAGGATCCTCTGGATGCTGGAATGTGCGATaGCCCGCAGGCTCGTGCGGTTGCCCACGTCAAGCC +
Preference number: 6 (lower is better)
Translates to: GCGGSSGCWNVR*PAGSCGCPRQA
Trigger: GGCTTGACGTGGGCAACCGCACGAGCCTGCGGGTCATCGCACATTCCAGCATCCAGAGGATCCTCCGCAACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CAA 72 bp GGGCCCCAGAAGATGAACACGGTGCCCTGGCTCACATaGAGCAGGTCATGGCGGTTGCGGAGGATCCTCTGG +
Preference number: 6 (lower is better)
Translates to: GPQKMNTVPWLT*SRSWRLRRILW
Trigger: CCAGAGGATCCTCCGCAACCGCCATGACCTGCTCAATGTGAGCCAGGGCACCGTGTTCATCTTCTGGGGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CAA 72 bp TTCAGCCGAGGCAGCACTTGGCTAAGGAGCTGTAGGTaGTTGTACGCCTGGCCCTTGCCATCCCGGCGCATG +
Preference number: 6 (lower is better)
Translates to: FSRGSTWLRSCR*LYAWPLPSRRM
Trigger: CATGCGCCGGGATGGCAAGGGCCAGGCGTACAACAACCTACAGCTCCTTAGCCAAGTGCTGCCTCGGCTGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS TCA 72 bp ATAACACACTCTGTCTGGTCGATGTGGGGGCCCTGCTaGCTACGCAGCAGATGCCCTGAGCTGGTCACCAGG +
Preference number: 6 (lower is better)
Translates to: ITHSVWSMWGPC*LRSRCPELVTR
Trigger: CCTGGTGACCAGCTCAGGGCATCTGCTGCGTAGTCAGCAGGGCCCCCACATCGACCAGACAGAGTGTGTTAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CCA 72 bp GGGGGCCCTGCTGACTACGCAGCAGATGCCCTGAGCTaGTCACCAGGGCGCAATCCTTGCAATGCATTTTCA +
Preference number: 6 (lower is better)
Translates to: GGPADYAADALS*SPGRNPCNAFS
Trigger: TGAAAATGCATTGCAAGGATTGCGCCCTGGTGACCAGCTCAGGGCATCTGCTGCGTAGTCAGCAGGGCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CCA 72 bp ACATTGAGCAGGTCATGGCGGTTGCGGAGGATCCTCTaGATGCTGGAATGTGCGATGACCCGCAGGCTCGTG +
Preference number: 6 (lower is better)
Translates to: TLSRSWRLRRIL*MLECAMTRRLV
Trigger: CACGAGCCTGCGGGTCATCGCACATTCCAGCATCCAGAGGATCCTCCGCAACCGCCATGACCTGCTCAATGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CCA 72 bp CGCGTGATCATGAAGGCCTTCAGCCGAGGCAGCACTTaGCTAAGGAGCTGTAGGTTGTTGTACGCCTGGCCC +
Preference number: 6 (lower is better)
Translates to: RVIMKAFSRGST*LRSCRLLYAWP
Trigger: GGGCCAGGCGTACAACAACCTACAGCTCCTTAGCCAAGTGCTGCCTCGGCTGAAGGCCTTCATGATCACGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CAA 72 bp ACGGTGCCCTGGCTCACATTGAGCAGGTCATGGCGGTaGCGGAGGATCCTCTGGATGCTGGAATGTGCGATG +
Preference number: 6 (lower is better)
Translates to: TVPWLTLSRSWR*RRILWMLECAM
Trigger: CATCGCACATTCCAGCATCCAGAGGATCCTCCGCAACCGCCATGACCTGCTCAATGTGAGCCAGGGCACCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CAA 90 bp AAGATGAACACGGTGCCCTGGCTCACATTGAGCAGGTCATGGCGGTaGCGGAGGATCCTCTGGATGCTGGAATGTGCGATGACCCGCAGG +
Preference number: 6 (lower is better)
Translates to: KMNTVPWLTLSRSWR*RRILWMLECAMTRR
Trigger: CCTGCGGGTCATCGCACATTCCAGCATCCAGAGGATCCTCCGCAACCGCCATGACCTGCTCAATGTGAGCCAGGGCACCGTGTTCATCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 72 bp TGCCCTGAGCTGGTCACCAGGGCGCAATCCTTGCAATaGATTTTCAGGGGCTTGTGGTCTGCTACACCGAGG +
Preference number: 6 (lower is better)
Translates to: CPELVTRAQSLQ*IFRGLWSATPR
Trigger: CCTCGGTGTAGCAGACCACAAGCCCCTGAAAATGCATTGCAAGGATTGCGCCCTGGTGACCAGCTCAGGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CCA 72 bp TCCTGCTTGAAGAGCTCATCGAACTGCAGCATCCTGTaGCGCGTGATCATGAAGGCCTTCAGCCGAGGCAGC +
Preference number: 6 (lower is better)
Translates to: SCLKSSSNCSIL*RVIMKAFSRGS
Trigger: GCTGCCTCGGCTGAAGGCCTTCATGATCACGCGCCACAGGATGCTGCAGTTCGATGAGCTCTTCAAGCAGGA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 72 bp GCAGATGCCCTGAGCTGGTCACCAGGGCGCAATCCTTaGAATGCATTTTCAGGGGCTTGTGGTCTGCTACAC +
Preference number: 6 (lower is better)
Translates to: ADALSWSPGRNP*NAFSGACGLLH
Trigger: GTGTAGCAGACCACAAGCCCCTGAAAATGCATTGCAAGGATTGCGCCCTGGTGACCAGCTCAGGGCATCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CCA 72 bp AGGGCGCAATCCTTGCAATGCATTTTCAGGGGCTTGTaGTCTGCTACACCGAGGTATCCTTCGAGCTGCCGG +
Preference number: 6 (lower is better)
Translates to: RAQSLQCIFRGL*SATPRYPSSCR
Trigger: CCGGCAGCTCGAAGGATACCTCGGTGTAGCAGACCACAAGCCCCTGAAAATGCATTGCAAGGATTGCGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CCA 72 bp ATGAACACGGTGCCCTGGCTCACATTGAGCAGGTCATaGCGGTTGCGGAGGATCCTCTGGATGCTGGAATGT +
Preference number: 6 (lower is better)
Translates to: MNTVPWLTLSRS*RLRRILWMLEC
Trigger: ACATTCCAGCATCCAGAGGATCCTCCGCAACCGCCATGACCTGCTCAATGTGAGCCAGGGCACCGTGTTCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CAA 72 bp ACCAGGGCGCAATCCTTGCAATGCATTTTCAGGGGCTaGTGGTCTGCTACACCGAGGTATCCTTCGAGCTGC +
Preference number: 6 (lower is better)
Translates to: TRAQSLQCIFRG*WSATPRYPSSC
Trigger: GCAGCTCGAAGGATACCTCGGTGTAGCAGACCACAAGCCCCTGAAAATGCATTGCAAGGATTGCGCCCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 72 bp TCTTTGCCAGTCTCCTGCTTGAAGAGCTCATCGAACTaGAGCATCCTGTGGCGCGTGATCATGAAGGCCTTC +
Preference number: 6 (lower is better)
Translates to: SLPVSCLKSSSN*SILWRVIMKAF
Trigger: GAAGGCCTTCATGATCACGCGCCACAGGATGCTGCAGTTCGATGAGCTCTTCAAGCAGGAGACTGGCAAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CCA 72 bp AGGCTCATAGTAATGATAGGGTACGGAAGGATGCTTTaGGTCCCTGCAGAAGTCTGGGGGCACCATGCCGTA +
Preference number: 6 (lower is better)
Translates to: RLIVMIGYGRML*VPAEVWGHHAV
Trigger: TACGGCATGGTGCCCCCAGACTTCTGCAGGGACCCAAAGCATCCTTCCGTACCCTATCATTACTATGAGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CAA 72 bp GTGTTGGAGATCTTCCTGTCTTTGCCAGTCTCCTGCTaGAAGAGCTCATCGAACTGCAGCATCCTGTGGCGC +
Preference number: 6 (lower is better)
Translates to: VLEIFLSLPVSC*KSSSNCSILWR
Trigger: GCGCCACAGGATGCTGCAGTTCGATGAGCTCTTCAAGCAGGAGACTGGCAAAGACAGGAAGATCTCCAACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 72 bp AGTAATGATAGGGTACGGAAGGATGCTTTGGGTCCCTaGAGAAGTCTGGGGGCACCATGCCGTAAACATCGA +
Preference number: 6 (lower is better)
Translates to: SNDRVRKDALGP*RSLGAPCRKHR
Trigger: TCGATGTTTACGGCATGGTGCCCCCAGACTTCTGCAGGGACCCAAAGCATCCTTCCGTACCCTATCATTACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 72 bp CAAGTGTTGGAGATCTTCCTGTCTTTGCCAGTCTCCTaGTTGAAGAGCTCATCGAACTGCAGCATCCTGTGG +
Preference number: 6 (lower is better)
Translates to: QVLEIFLSLPVS*LKSSSNCSILW
Trigger: CCACAGGATGCTGCAGTTCGATGAGCTCTTCAAGCAGGAGACTGGCAAAGACAGGAAGATCTCCAACACTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CAA 72 bp GACTGCCCTTGCGTCCTCGCTCGTGAGAGAGGTACATaGTACATTCATCGGGTCCTGAAGGCTCATAGTAAT +
Preference number: 6 (lower is better)
Translates to: DCPCVLARERGT*YIHRVLKAHSN
Trigger: ATTACTATGAGCCTTCAGGACCCGATGAATGTACAATGTACCTCTCTCACGAGCGAGGACGCAAGGGCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS CAA 90 bp AACGGTGATGACTGCCCTTGCGTCCTCGCTCGTGAGAGAGGTACATaGTACATTCATCGGGTCCTGAAGGCTCATAGTAATGATAGGGTA +
Preference number: 6 (lower is better)
Translates to: NGDDCPCVLARERGT*YIHRVLKAHSNDRV
Trigger: TACCCTATCATTACTATGAGCCTTCAGGACCCGATGAATGTACAATGTACCTCTCTCACGAGCGAGGACGCAAGGGCAGTCATCACCGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS TCA 72 bp GAACACAGGCTTACCCTCGGCATGATTCACAGCGGGTaGTTCTGGTTTCCAGTCTGGTTGGAAAAAGTGAAT +
Preference number: 6 (lower is better)
Translates to: EHRLTLGMIHSG*FWFPVWLEKVN
Trigger: ATTCACTTTTTCCAACCAGACTGGAAACCAGAATCACCCGCTGTGAATCATGCCGAGGGTAAGCCTGTGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS TCA 72 bp CTCGTGAGAGAGGTACATTGTACATTCATCGGGTCCTaGAGGCTCATAGTAATGATAGGGTACGGAAGGATG +
Preference number: 6 (lower is better)
Translates to: LVREVHCTFIGS*RLIVMIGYGRM
Trigger: CATCCTTCCGTACCCTATCATTACTATGAGCCTTCAGGACCCGATGAATGTACAATGTACCTCTCTCACGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS TCA 72 bp GCGGGTGATTCTGGTTTCCAGTCTGGTTGGAAAAAGTaGATGTTGAATGTCCGTGCCCAGTTCTTAAACACC +
Preference number: 6 (lower is better)
Translates to: AGDSGFQSGWKK*MLNVRAQFLNT
Trigger: GGTGTTTAAGAACTGGGCACGGACATTCAACATTCACTTTTTCCAACCAGACTGGAAACCAGAATCACCCGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6
CDS GCA 72 bp CCAGTCTGGTTGGAAAAAGTGAATGTTGAATGTCCGTaGCCAGTTCTTAAACACCCGTTTCTCTGTAATGAA +
Preference number: 6 (lower is better)
Translates to: PVWLEKVNVECP*PVLKHPFLCNE
Trigger: TTCATTACAGAGAAACGGGTGTTTAAGAACTGGGCACGGACATTCAACATTCACTTTTTCCAACCAGACTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044278.6