RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ST6GALNAC3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052544

Ensembl transcript IDs: ENSMUST00000064460.7, ENSMUST00000199707.2, ENSMUST00000200397.5

Found 211 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCTGGCTTACAGAGGGAACGGAGCCCAGCGCCATGTTCCTCTGTGTaGCTTTCGCTGAGCTACAGGTGGTCGAGTCTGCTGACACTGATT +
Preference number: 1 (lower is better)
Translates to: PGLQRERSPAPCSSV*LSLSYRWSSLLTLI
Trigger: AATCAGTGTCAGCAGACTCGACCACCTGTAGCTCAGCGAAAGCCACACAGAGGAACATGGCGCTGGGCTCCGTTCCCTCTGTAAGCCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 90 bp CTGCTCTATGGCCGTGTAACAGAAACCATGCAGAATGTCGCCTCCTaGCTTACAGAGGGAACGGAGCCCAGCGCCATGTTCCTCTGTGTG +
Preference number: 1 (lower is better)
Translates to: LLYGRVTETMQNVAS*LTEGTEPSAMFLCV
Trigger: CACACAGAGGAACATGGCGCTGGGCTCCGTTCCCTCTGTAAGCCAGGAGGCGACATTCTGCATGGTTTCTGTTACACGGCCATAGAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 90 bp GGTGTTCCCAGAGAGAGAGGTGTTCTTAGGAGGAAAGACCCAGCCTaGACGTGGGCAGCACCATTCCATGCGCTGAGGTGTCAGGAGAAA +
Preference number: 1 (lower is better)
Translates to: GVPRERGVLRRKDPA*TWAAPFHALRCQEK
Trigger: TTTCTCCTGACACCTCAGCGCATGGAATGGTGCTGCCCACGTTCAGGCTGGGTCTTTCCTCCTAAGAACACCTCTCTCTCTGGGAACACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 90 bp CTGACTTCCTCTTCTCTGCTGCCCATTCGCCACCATGGGCCAAGCTaGTCTTGGTACCTTCACTGCCGGGACAGATCATGTTCTTGTGAG +
Preference number: 1 (lower is better)
Translates to: LTSSSLLPIRHHGPS*SWYLHCRDRSCSCE
Trigger: CTCACAAGAACATGATCTGTCCCGGCAGTGAAGGTACCAAGAGCAGCTTGGCCCATGGTGGCGAATGGGCAGCAGAGAAGAGGAAGTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 90 bp GAGAAGGAAGCCGTCTCAGGCCTAGACCAGGGAACTGTATTTCTCTaGTTCCATTCCTATCCATTGTCCCCGAGCCCTGGAACAGAGCCA +
Preference number: 1 (lower is better)
Translates to: EKEAVSGLDQGTVFL*FHSYPLSPSPGTEP
Trigger: TGGCTCTGTTCCAGGGCTCGGGGACAATGGATAGGAATGGAAGCAGAGAAATACAGTTCCCTGGTCTAGGCCTGAGACGGCTTCCTTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 90 bp GCGATCAGACTGGCGGCTTTTCCAGGTCCTTGCATCTCTATATATTaGGTGCATAGGATGCTGAGCACTGGCTCCCGAAGTCACAGCGTC +
Preference number: 1 (lower is better)
Translates to: AIRLAAFPGPCISIY*VHRMLSTGSRSHSV
Trigger: GACGCTGTGACTTCGGGAGCCAGTGCTCAGCATCCTATGCACCCAATATATAGAGATGCAAGGACCTGGAAAAGCCGCCAGTCTGATCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 90 bp AGCCCAGCGCCATGTTCCTCTGTGTGGCTTTCGCTGAGCTACAGGTaGTCGAGTCTGCTGACACTGATTGCTACACTTGTGTGTCTGATT +
Preference number: 1 (lower is better)
Translates to: SPAPCSSVWLSLSYR*SSLLTLIATLVCLI
Trigger: AATCAGACACACAAGTGTAGCAATCAGTGTCAGCAGACTCGACCACCTGTAGCTCAGCGAAAGCCACACAGAGGAACATGGCGCTGGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 90 bp GGTAGGTGGCCTGAGGCTTTCGCTGAGAGACATATGGAAGGAAGATaGCATATCAGAAAGAGATACCTCCCCTCTATCAGGCTGACTGGT +
Preference number: 1 (lower is better)
Translates to: GRWPEAFAERHMEGR*HIRKRYLPSIRLTG
Trigger: ACCAGTCAGCCTGATAGAGGGGAGGTATCTCTTTCTGATATGCCATCTTCCTTCCATATGTCTCTCAGCGAAAGCCTCAGGCCACCTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 90 bp AGGACTCCATGGCTTTGGAAGAAGACAAATCAACAGGTCGAAGGTTaGGCTCCATGGAGTCAAAGTGGCTGTAAAGCAGCATGCGTGTGG +
Preference number: 1 (lower is better)
Translates to: RTPWLWKKTNQQVEG*APWSQSGCKAACVW
Trigger: CCACACGCATGCTGCTTTACAGCCACTTTGACTCCATGGAGCTCAACCTTCGACCTGTTGATTTGTCTTCTTCCAAAGCCATGGAGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 90 bp GACTTACCCATAGAGCCTCCTGACACAGACCTCTCTTGCTCTTTCTaGACTGATGAGCCAAACAGGAAGGACTCCATGGCTTTGGAAGAA +
Preference number: 1 (lower is better)
Translates to: DLPIEPPDTDLSCSF*TDEPNRKDSMALEE
Trigger: TTCTTCCAAAGCCATGGAGTCCTTCCTGTTTGGCTCATCAGTGCAGAAAGAGCAAGAGAGGTCTGTGTCAGGAGGCTCTATGGGTAAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 90 bp GTATCCTCAGTTCTAGATTTAGCATCTTCTCTGGCTTTATTCCTCTaGCCAGCCATGCGGTGTGATTTCATACACACTCGGCAATCAGCG +
Preference number: 1 (lower is better)
Translates to: VSSVLDLASSLALFL*PAMRCDFIHTRQSA
Trigger: CGCTGATTGCCGAGTGTGTATGAAATCACACCGCATGGCTGGCCAGAGGAATAAAGCCAGAGAAGATGCTAAATCTAGAACTGAGGATAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 90 bp GAAATGGAAGCAGAGAAAAGTATTACTTCAGAGGAAAGCAACTCCTaGGCGTTGGTCAAAGCCCTCATTGCAAAGGCACTCAACTGGGTC +
Preference number: 1 (lower is better)
Translates to: EMEAEKSITSEESNS*ALVKALIAKALNWV
Trigger: GACCCAGTTGAGTGCCTTTGCAATGAGGGCTTTGACCAACGCTCAGGAGTTGCTTTCCTCTGAAGTAATACTTTTCTCTGCTTCCATTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 90 bp TACTTCAGAGGAAAGCAACTCCTGAGCGTTGGTCAAAGCCCTCATTaGAAAGGCACTCAACTGGGTCTTCATGAAGTGCTTTTGGTTTCA +
Preference number: 1 (lower is better)
Translates to: YFRGKQLLSVGQSPH*KGTQLGLHEVLLVS
Trigger: TGAAACCAAAAGCACTTCATGAAGACCCAGTTGAGTGCCTTTGCAATGAGGGCTTTGACCAACGCTCAGGAGTTGCTTTCCTCTGAAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 90 bp GTACGCAGGAATTACAGAATGCCTTCATTGCTACATTTAGGTAGGTaGCCTGAGGCTTTCGCTGAGAGACATATGGAAGGAAGATGGCAT +
Preference number: 1 (lower is better)
Translates to: VRRNYRMPSLLHLGR*PEAFAERHMEGRWH
Trigger: ATGCCATCTTCCTTCCATATGTCTCTCAGCGAAAGCCTCAGGCCACCTACCTAAATGTAGCAATGAAGGCATTCTGTAATTCCTGCGTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 90 bp AGTGGCTGTAAAGCAGCATGCGTGTGGAATTCATCGACCAGCTACTaGAACATTGCGGTTCTTGTTACATCTTTTCAGACTACCCTGACT +
Preference number: 1 (lower is better)
Translates to: SGCKAACVWNSSTSY*NIAVLVTSFQTTLT
Trigger: AGTCAGGGTAGTCTGAAAAGATGTAACAAGAACCGCAATGTTCCAGTAGCTGGTCGATGAATTCCACACGCATGCTGCTTTACAGCCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 90 bp TGGTACCTTCACTGCCGGGACAGATCATGTTCTTGTGAGCCCAAATaGTTACTCCTGTGGCTGAATTCTGTCAGTTGTTTAAACACAGAT +
Preference number: 1 (lower is better)
Translates to: WYLHCRDRSCSCEPK*LLLWLNSVSCLNTD
Trigger: ATCTGTGTTTAAACAACTGACAGAATTCAGCCACAGGAGTAAGCATTTGGGCTCACAAGAACATGATCTGTCCCGGCAGTGAAGGTACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 90 bp TTTAGCATCTTCTCTGGCTTTATTCCTCTGGCCAGCCATGCGGTGTaGTTTCATACACACTCGGCAATCAGCGCATTTACTTTGGATTTT +
Preference number: 1 (lower is better)
Translates to: FSIFSGFIPLASHAV*FHTHSAISAFTLDF
Trigger: AAAATCCAAAGTAAATGCGCTGATTGCCGAGTGTGTATGAAATCACACCGCATGGCTGGCCAGAGGAATAAAGCCAGAGAAGATGCTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 90 bp GTCGTCACTTCTGGAAGCCTCTTGAAGAATTCTGAGCAGCTATCTTaGAAGGTAATCTTCGTGTTTTCTTTAGTCACAGCCATCAGGTCA +
Preference number: 1 (lower is better)
Translates to: VVTSGSLLKNSEQLS*KVIFVFSLVTAIRS
Trigger: TGACCTGATGGCTGTGACTAAAGAAAACACGAAGATTACCTTTCAAGATAGCTGCTCAGAATTCTTCAAGAGGCTTCCAGAAGTGACGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 90 bp CTAAGGGATGGTCAACCCCATGAAGGCAAAAGCTCAGCCTGGGTTTaGTGGTATAAAGAGTGTTTGGCACTTGGCATTGATAATGTATAT +
Preference number: 1 (lower is better)
Translates to: LRDGQPHEGKSSAWV*WYKECLALGIDNVY
Trigger: ATATACATTATCAATGCCAAGTGCCAAACACTCTTTATACCATCAAACCCAGGCTGAGCTTTTGCCTTCATGGGGTTGACCATCCCTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 90 bp TGCCGGGACAGATCATGTTCTTGTGAGCCCAAATGCTTACTCCTGTaGCTGAATTCTGTCAGTTGTTTAAACACAGATAGGAGAAATAAC +
Preference number: 1 (lower is better)
Translates to: CRDRSCSCEPKCLLL*LNSVSCLNTDRRNN
Trigger: GTTATTTCTCCTATCTGTGTTTAAACAACTGACAGAATTCAGCCACAGGAGTAAGCATTTGGGCTCACAAGAACATGATCTGTCCCGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 90 bp TGGGCCATGGTAGATTCTTCTAGTAAACCACATGGGCATCTCCCCTaGTTATTATTTAGCATTTTAAAGGGCACAGTGGGAAGAGTATTA +
Preference number: 1 (lower is better)
Translates to: WAMVDSSSKPHGHLP*LLFSILKGTVGRVL
Trigger: TAATACTCTTCCCACTGTGCCCTTTAAAATGCTAAATAATAACCAGGGGAGATGCCCATGTGGTTTACTAGAAGAATCTACCATGGCCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 90 bp CTGGTAAAGCCGTGTCCTGGGTATCTTTTTGCCTTAAATATAACATaGACGAATACCTTGATCCTTGTTTCTTTCAGTCACAAAAGCCCA +
Preference number: 1 (lower is better)
Translates to: LVKPCPGYLFALNIT*TNTLILVSFSHKSP
Trigger: TGGGCTTTTGTGACTGAAAGAAACAAGGATCAAGGTATTCGTGCATGTTATATTTAAGGCAAAAAGATACCCAGGACACGGCTTTACCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 90 bp TTGTTGGTACTGAGTGCTGAAGCAGAGAGAGAAACCCTTTGGTTATaGTCAAGAAATGCTTTCACAGTATGTGTTATTACAGTGTTGAAG +
Preference number: 1 (lower is better)
Translates to: LLVLSAEAERETLWL*SRNAFTVCVITVLK
Trigger: CTTCAACACTGTAATAACACATACTGTGAAAGCATTTCTTGAGCATAACCAAAGGGTTTCTCTCTCTGCTTCAGCACTCAGTACCAACAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 90 bp CTGTTTTGTGATTCAAAAAGCATCTCATTTGTTGGTACTGAGTGCTaGAGCAGAGAGAGAAACCCTTTGGTTATGCTCAAGAAATGCTTT +
Preference number: 1 (lower is better)
Translates to: LFCDSKSISFVGTEC*SRERNPLVMLKKCF
Trigger: AAAGCATTTCTTGAGCATAACCAAAGGGTTTCTCTCTCTGCTTCAGCACTCAGTACCAACAAATGAGATGCTTTTTGAATCACAAAACAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 90 bp AATCACCTGTATTCAAACCTTATTTCACTGCTATTATCTGAACTGTaGCGAACCACCTTACTTCTGTATGCTTCAGCTGTTTATGTGGAA +
Preference number: 1 (lower is better)
Translates to: NHLYSNLISLLLSEL*RTTLLLYASAVYVE
Trigger: TTCCACATAAACAGCTGAAGCATACAGAAGTAAGGTGGTTCGCCACAGTTCAGATAATAGCAGTGAAATAAGGTTTGAATACAGGTGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 90 bp CAATCATATACTAATTTACACAAATGCTACTCTATACATATATTCTaGGGCAGAGCAACTTGGGACACAGGAACACAGCTAACAATGCAG +
Preference number: 1 (lower is better)
Translates to: QSYTNLHKCYSIHIF*GRATWDTGTQLTMQ
Trigger: CTGCATTGTTAGCTGTGTTCCTGTGTCCCAAGTTGCTCTGCCTCAGAATATATGTATAGAGTAGCATTTGTGTAAATTAGTATATGATTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 90 bp GTATTCAAATCACCTGTATTCAAACCTTATTTCACTGCTATTATCTaGACTGTGGCGAACCACCTTACTTCTGTATGCTTCAGCTGTTTA +
Preference number: 1 (lower is better)
Translates to: VFKSPVFKPYFTAII*TVANHLTSVCFSCL
Trigger: TAAACAGCTGAAGCATACAGAAGTAAGGTGGTTCGCCACAGTTCAGATAATAGCAGTGAAATAAGGTTTGAATACAGGTGATTTGAATAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 90 bp CTGATCTATGACACAGCCATCCTTGTGGTCATCTTGTATAATCTCTaGTGTATTTGGCAGAGAACTCAATCATATACTAATTTACACAAA +
Preference number: 1 (lower is better)
Translates to: LIYDTAILVVILYNL*CIWQRTQSYTNLHK
Trigger: TTTGTGTAAATTAGTATATGATTGAGTTCTCTGCCAAATACAGCAGAGATTATACAAGATGACCACAAGGATGGCTGTGTCATAGATCAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 90 bp GGAATCATATGCATGCTTTCTCATACAGTTGTAAGTACATATATATaGACTGCCCATTCATGTACTACATGCACAAATGGACTTCATGTT +
Preference number: 1 (lower is better)
Translates to: GIICMLSHTVVSTYI*TAHSCTTCTNGLHV
Trigger: AACATGAAGTCCATTTGTGCATGTAGTACATGAATGGGCAGTGCATATATATGTACTTACAACTGTATGAGAAAGCATGCATATGATTCC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CCA 90 bp TCCTGGCTTACAGAGGGAACGGAGCCCAGCGCCATGTTCCTCTGTGTGGCTTTCATCAGCTGCTGGGGGTaGCAGAATGTGCCGGCAATC +
Preference number: 2 (lower is better)
Translates to: SWLTEGTEPSAMFLCVAFISCWG*QNVPAI
Trigger: GATTGCCGGCACATTCTGCCACCCCCAGCAGCTGAT...GAAAGCCACACAGAGGAACATGGCGCTGGGCTCCGTTCCCTCTGTAAGCCAGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR GCA 90 bp TCCTGGCTTACAGAGGGAACGGAGCCCAGCGCCATGTTCCTCTGTGTGGCTTTCCGGTGGACTAGTACCTaGAGGGCCAACAGGAGCTTT +
Preference number: 2 (lower is better)
Translates to: SWLTEGTEPSAMFLCVAFRWTST*RANRSF
Trigger: AAAGCTCCTGTTGGCCCTGCAGGTACTAGTCCACCG...GAAAGCCACACAGAGGAACATGGCGCTGGGCTCCGTTCCCTCTGTAAGCCAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CCA 90 bp TTCCCAGAGGACAAAGCCCCTGACCAGCTCACTGCTGTGCATCTCAGTCTCTTGATGCAGATCAGCTGCTaGGGGTGGCAGAATGTGCCG +
Preference number: 2 (lower is better)
Translates to: FPEDKAPDQLTAVHLSLLMQISC*GWQNVP
Trigger: CGGCACATTCTGCCACCCCCAGCAGCTGATCTGCAT...CAAGAGACTGAGATGCACAGCAGTGAGCTGGTCAGGGGCTTTGTCCTCTGGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp TTCCCAGAGGACAAAGCCCCTGACCAGCTCACTGCTGTGCATCTCAGTCTCTTGATACTGCAGAGGATGTaGGGCCTCCGACAGGAACTC +
Preference number: 2 (lower is better)
Translates to: FPEDKAPDQLTAVHLSLLILQRM*GLRQEL
Trigger: GAGTTCCTGTCGGAGGCCTCACATCCTCTGCAGTAT...CAAGAGACTGAGATGCACAGCAGTGAGCTGGTCAGGGGCTTTGTCCTCTGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 90 bp TCCACCATTTTCCAAGATGGGGAGCAGCCCGTGCACTCAGTAAGCTaGCCTGAGCAGGCAGAAGTCGTCACTTCTGGAAGCCTCTTGAAG +
Preference number: 2 (lower is better)
Translates to: STIFQDGEQPVHSVS*PEQAEVVTSGSLLK
Trigger: CTTCAAGAGGCTTCCAGAAGTGACGACTTCTGCCTGCTCAGGCAAGCTTACTGAGTGCACGGGCTGCTCCCCATCTTGGAAAATGGTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp TTCCCAGAGGACAAAGCCCCTGACCAGCTCACTGCTGTGCATCTCAGTCTCTTGGCTGCCCATCCTCAGTaGCAAACAGTGAGAAACGTG +
Preference number: 2 (lower is better)
Translates to: FPEDKAPDQLTAVHLSLLAAHPQ*QTVRNV
Trigger: CACGTTTCTCACTGTTTGTCACTGAGGATGGGCAGC...CAAGAGACTGAGATGCACAGCAGTGAGCTGGTCAGGGGCTTTGTCCTCTGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 90 bp ATGAGCTTCTGCCAGTTAGAAATGCAGTTAAGGGTGGCCTCTTCCTaGTTCCGGAATCGTGCTTCACGTGTCCTAACGCATGCCACCTGC +
Preference number: 2 (lower is better)
Translates to: MSFCQLEMQLRVASS*FRNRASRVLTHATC
Trigger: GCAGGTGGCATGCGTTAGGACACGTGAAGCACGATTCCGGAACAAGGAAGAGGCCACCCTTAACTGCATTTCTAACTGGCAGAAGCTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 90 bp CTGTGGCATGACATCTATACCCTGAAGGATGACTTGGGACAGTGTTaGATAGTCCACCATTTTCCAAGATGGGGAGCAGCCCGTGCACTC +
Preference number: 2 (lower is better)
Translates to: LWHDIYTLKDDLGQC*IVHHFPRWGAARAL
Trigger: GAGTGCACGGGCTGCTCCCCATCTTGGAAAATGGTGGACTATCAAACACTGTCCCAAGTCATCCTTCAGGGTATAGATGTCATGCCACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp CACGGCGATCAGACTGGCGGCTTTTCCAGGTCCTTGCATCTCTATATATTGGGTGTTGGTACTGAGTGCTaGAGCAGAGAGAGAAACCCT +
Preference number: 2 (lower is better)
Translates to: HGDQTGGFSRSLHLYILGVGTEC*SRERNP
Trigger: AGGGTTTCTCTCTCTGCTTCAGCACTCAGTACCAAC...ACCCAATATATAGAGATGCAAGGACCTGGAAAAGCCGCCAGTCTGATCGCCGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp CAGAAACAATCAACGGATGAGCTTCTGCCAGTTAGAAATGCAGTTAAGGGTGGCCTGTGTGGCTTTCGCTaGGCTACAGGTGGTCGAGTC +
Preference number: 2 (lower is better)
Translates to: QKQSTDELLPVRNAVKGGLCGFR*ATGGRV
Trigger: GACTCGACCACCTGTAGCTCAGCGAAAGCCACACAG...GCCACCCTTAACTGCATTTCTAACTGGCAGAAGCTCATCCGTTGATTGTTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CCA 90 bp CACGGCGATCAGACTGGCGGCTTTTCCAGGTCCTTGCATCTCTATATATTGGGTCTACATTTAGGTAGGTaGCCTGAGGCTTTCGCTGAG +
Preference number: 2 (lower is better)
Translates to: HGDQTGGFSRSLHLYILGLHLGR*PEAFAE
Trigger: CTCAGCGAAAGCCTCAGGCCACCTACCTAAATGTAG...ACCCAATATATAGAGATGCAAGGACCTGGAAAAGCCGCCAGTCTGATCGCCGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CCA 90 bp TTCCCAGAGGACAAAGCCCCTGACCAGCTCACTGCTGTGCATCTCAGTCTCTTGCATCGGCAAAGGCTGTaGAATCATATGCATGCTTTC +
Preference number: 2 (lower is better)
Translates to: FPEDKAPDQLTAVHLSLLHRQRL*NHMHAF
Trigger: GAAAGCATGCATATGATTCCACAGCCTTTGCCGATG...CAAGAGACTGAGATGCACAGCAGTGAGCTGGTCAGGGGCTTTGTCCTCTGGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 90 bp GGCCTAGACCAGGGAACTGTATTTCTCTGCTTCCATTCCTATCCATaGTCCCCGAGCCCTGGAACAGAGCCACTGACAGAAACAAAAACA +
Preference number: 2 (lower is better)
Translates to: GLDQGTVFLCFHSYP*SPSPGTEPLTETKT
Trigger: TGTTTTTGTTTCTGTCAGTGGCTCTGTTCCAGGGCTCGGGGACAATGGATAGGAATGGAAGCAGAGAAATACAGTTCCCTGGTCTAGGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp TTCCCAGAGGACAAAGCCCCTGACCAGCTCACTGCTGTGCATCTCAGTCTCTTGTCTATACATATATTCTaGGGCAGAGCAACTTGGGAC +
Preference number: 2 (lower is better)
Translates to: FPEDKAPDQLTAVHLSLLSIHIF*GRATWD
Trigger: GTCCCAAGTTGCTCTGCCTCAGAATATATGTATAGA...CAAGAGACTGAGATGCACAGCAGTGAGCTGGTCAGGGGCTTTGTCCTCTGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp CAGAAACAATCAACGGATGAGCTTCTGCCAGTTAGAAATGCAGTTAAGGGTGGCGAGGAAAGCAACTCCTaGGCGTTGGTCAAAGCCCTC +
Preference number: 2 (lower is better)
Translates to: QKQSTDELLPVRNAVKGGEESNS*ALVKAL
Trigger: GAGGGCTTTGACCAACGCTCAGGAGTTGCTTTCCTC...GCCACCCTTAACTGCATTTCTAACTGGCAGAAGCTCATCCGTTGATTGTTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR GCA 90 bp CAGAAACAATCAACGGATGAGCTTCTGCCAGTTAGAAATGCAGTTAAGGGTGGCGAGGGCCACTGTCTATaGCATTCCAGACGACTGCAG +
Preference number: 2 (lower is better)
Translates to: QKQSTDELLPVRNAVKGGEGHCL*HSRRLQ
Trigger: CTGCAGTCGTCTGGAATGGCATAGACAGTGGCCCTC...GCCACCCTTAACTGCATTTCTAACTGGCAGAAGCTCATCCGTTGATTGTTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CCA 90 bp TCGCTGAGAGACATATGGAAGGAAGATGGCATATCAGAAAGAGATACCTCCCCTCACCATTTTCCAAGATaGGGAGCAGCCCGTGCACTC +
Preference number: 2 (lower is better)
Translates to: SLRDIWKEDGISERDTSPHHFPR*GAARAL
Trigger: GAGTGCACGGGCTGCTCCCCATCTTGGAAAATGGTG...AGGGGAGGTATCTCTTTCTGATATGCCATCTTCCTTCCATATGTCTCTCAGCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 90 bp TGCTCTTTCTGCACTGATGAGCCAAACAGGAAGGACTCCATGGCTTaGGAAGAAGACAAATCAACAGGTCGAAGGTTGAGCTCCATGGAG +
Preference number: 2 (lower is better)
Translates to: CSFCTDEPNRKDSMA*EEDKSTGRRLSSME
Trigger: CTCCATGGAGCTCAACCTTCGACCTGTTGATTTGTCTTCTTCCAAAGCCATGGAGTCCTTCCTGTTTGGCTCATCAGTGCAGAAAGAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp TTCCCAGAGGACAAAGCCCCTGACCAGCTCACTGCTGTGCATCTCAGTCTCTTGGCACAGCTGTCTGAGTaGAAATTTGTCAATATTTGC +
Preference number: 2 (lower is better)
Translates to: FPEDKAPDQLTAVHLSLLAQLSE*KFVNIC
Trigger: GCAAATATTGACAAATTTTCACTCAGACAGCTGTGC...CAAGAGACTGAGATGCACAGCAGTGAGCTGGTCAGGGGCTTTGTCCTCTGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CCA 90 bp TCGCTGAGAGACATATGGAAGGAAGATGGCATATCAGAAAGAGATACCTCCCCTGAATGTCCAGGGCCATaGTCACACCCTGAACATCCT +
Preference number: 2 (lower is better)
Translates to: SLRDIWKEDGISERDTSPECPGP*SHPEHP
Trigger: AGGATGTTCAGGGTGTGACCATGGCCCTGGACATTC...AGGGGAGGTATCTCTTTCTGATATGCCATCTTCCTTCCATATGTCTCTCAGCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CCA 90 bp TTCCCAGAGGACAAAGCCCCTGACCAGCTCACTGCTGTGCATCTCAGTCTCTTGTATGCCATTGAGTTGTaGTGTCTGTGTGTACATTTC +
Preference number: 2 (lower is better)
Translates to: FPEDKAPDQLTAVHLSLLYAIEL*CLCVHF
Trigger: GAAATGTACACACAGACACCACAACTCAATGGCATA...CAAGAGACTGAGATGCACAGCAGTGAGCTGGTCAGGGGCTTTGTCCTCTGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR GCA 90 bp TTCCCAGAGGACAAAGCCCCTGACCAGCTCACTGCTGTGCATCTCAGTCTCTTGGAGAAAGAGGCACTTTaGTACCTCAGAAACAATTTT +
Preference number: 2 (lower is better)
Translates to: FPEDKAPDQLTAVHLSLLEKEAL*YLRNNF
Trigger: AAAATTGTTTCTGAGGTAGCAAAGTGCCTCTTTCTC...CAAGAGACTGAGATGCACAGCAGTGAGCTGGTCAGGGGCTTTGTCCTCTGGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 90 bp GATAGTCCAGTAATCCTGGTACGCAGGAATTACAGAATGCCTTCATaGCTACATTTAGGTAGGTGGCCTGAGGCTTTCGCTGAGAGACAT +
Preference number: 2 (lower is better)
Translates to: DSPVILVRRNYRMPS*LHLGRWPEAFAERH
Trigger: ATGTCTCTCAGCGAAAGCCTCAGGCCACCTACCTAAATGTAGCAATGAAGGCATTCTGTAATTCCTGCGTACCAGGATTACTGGACTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp CACGGCGATCAGACTGGCGGCTTTTCCAGGTCCTTGCATCTCTATATATTGGGTTCAAGGTTCTACAGCTaGGGTGTATTGTTATTTCCA +
Preference number: 2 (lower is better)
Translates to: HGDQTGGFSRSLHLYILGSRFYS*GVLLFP
Trigger: TGGAAATAACAATACACCTCAGCTGTAGAACCTTGA...ACCCAATATATAGAGATGCAAGGACCTGGAAAAGCCGCCAGTCTGATCGCCGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR GCA 90 bp CCCAACAAATTTCAGCTGAAGTCTAAAATAAGGCTTTCTATGAGTCACACATCGGGGGGTGGCAGAATGTaGCGGCAATCATCCAGTGAG +
Preference number: 2 (lower is better)
Translates to: PNKFQLKSKIRLSMSHTSGGGRM*RQSSSE
Trigger: CTCACTGGATGATTGCCGGCACATTCTGCCACCCCC...CGATGTGTGACTCATAGAAAGCCTTATTTTAGACTTCAGCTGAAATTTGTTGGG
47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp CACGGCGATCAGACTGGCGGCTTTTCCAGGTCCTTGCATCTCTATATATTGGGTGCTTTCCCTGTTTTGTaGTTCAAAAAGCATCTCATT +
Preference number: 2 (lower is better)
Translates to: HGDQTGGFSRSLHLYILGAFPVL*FKKHLI
Trigger: AATGAGATGCTTTTTGAATCACAAAACAGGGAAAGC...ACCCAATATATAGAGATGCAAGGACCTGGAAAAGCCGCCAGTCTGATCGCCGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp AACCTTATTTCACTGCTATTATCTGAACTGTGGCGAACCACCTTACTTCTGTATCACCATTCCATGCGCTaGGGTGTCAGGAGAAAAGCC +
Preference number: 2 (lower is better)
Translates to: NLISLLLSELWRTTLLLYHHSMR*GVRRKA
Trigger: GGCTTTTCTCCTGACACCTCAGCGCATGGAATGGTG...ATACAGAAGTAAGGTGGTTCGCCACAGTTCAGATAATAGCAGTGAAATAAGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 90 bp TTTACACAAATGCTACTCTATACATATATTCTGAGGCAGAGCAACTaGGGACACAGGAACACAGCTAACAATGCAGATCAGCTGCTGGGG +
Preference number: 2 (lower is better)
Translates to: FTQMLLYTYILRQSN*GHRNTANNADQLLG
Trigger: CCCCAGCAGCTGATCTGCATTGTTAGCTGTGTTCCTGTGTCCCAAGTTGCTCTGCCTCAGAATATATGTATAGAGTAGCATTTGTGTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp TCGCTGAGAGACATATGGAAGGAAGATGGCATATCAGAAAGAGATACCTCCCCTCCTCTTGAAGAATTCTaGGCAGCTATCTTGAAAGGT +
Preference number: 2 (lower is better)
Translates to: SLRDIWKEDGISERDTSPPLEEF*AAILKG
Trigger: ACCTTTCAAGATAGCTGCTCAGAATTCTTCAAGAGG...AGGGGAGGTATCTCTTTCTGATATGCCATCTTCCTTCCATATGTCTCTCAGCGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp CGCCCTTTGCCAAACGGTAAGCTTCGTTTTAAGATGTCTATAAATAAAGGACTACCTCACAAACACAAGTaGGGCAGCGAAGATGGTGAG +
Preference number: 2 (lower is better)
Translates to: RPLPNGKLRFKMSINKGLPHKHK*GSEDGE
Trigger: CTCACCATCTTCGCTGCCTCACTTGTGTTTGTGAGG...TAGTCCTTTATTTATAGACATCTTAAAACGAAGCTTACCGTTTGGCAAAGGGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR GCA 90 bp AACCTTATTTCACTGCTATTATCTGAACTGTGGCGAACCACCTTACTTCTGTATACAATGCAGATCAGCTaGTGGGGGTGGCAGAATGTG +
Preference number: 2 (lower is better)
Translates to: NLISLLLSELWRTTLLLYTMQIS*WGWQNV
Trigger: CACATTCTGCCACCCCCAGCAGCTGATCTGCATTGT...ATACAGAAGTAAGGTGGTTCGCCACAGTTCAGATAATAGCAGTGAAATAAGGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR GCA 90 bp CACGGCGATCAGACTGGCGGCTTTTCCAGGTCCTTGCATCTCTATATATTGGGTGGAGAAATTAGACTTTaGATTTCTACCAGAACTAAG +
Preference number: 2 (lower is better)
Translates to: HGDQTGGFSRSLHLYILGGEIRL*ISTRTK
Trigger: CTTAGTTCTGGTAGAAATGCAAAGTCTAATTTCTCC...ACCCAATATATAGAGATGCAAGGACCTGGAAAAGCCGCCAGTCTGATCGCCGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR GCA 90 bp CACGGCGATCAGACTGGCGGCTTTTCCAGGTCCTTGCATCTCTATATATTGGGTCATTCATGTACTACATaGACAAATGGACTTCATGTT +
Preference number: 2 (lower is better)
Translates to: HGDQTGGFSRSLHLYILGHSCTT*TNGLHV
Trigger: AACATGAAGTCCATTTGTGCATGTAGTACATGAATG...ACCCAATATATAGAGATGCAAGGACCTGGAAAAGCCGCCAGTCTGATCGCCGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CCA 90 bp AACCTTATTTCACTGCTATTATCTGAACTGTGGCGAACCACCTTACTTCTGTATTGCTGGTGGAGCCTGTaGGCCATGGTAGATTCTTCT +
Preference number: 2 (lower is better)
Translates to: NLISLLLSELWRTTLLLYCWWSL*AMVDSS
Trigger: AGAAGAATCTACCATGGCCCACAGGCTCCACCAGCA...ATACAGAAGTAAGGTGGTTCGCCACAGTTCAGATAATAGCAGTGAAATAAGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 90 bp TCACCACAGATCACTGAGACATTAAGAGTGACGTCTCTTGAACTGTaGGCACGCCTAAGTTATTTCAGCATTTCTTGCTCAGCAGTTGTT +
Preference number: 2 (lower is better)
Translates to: SPQITETLRVTSLEL*ARLSYFSISCSAVV
Trigger: AACAACTGCTGAGCAAGAAATGCTGAAATAACTTAGGCGTGCCAACAGTTCAAGAGACGTCACTCTTAATGTCTCAGTGATCTGTGGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp AGTACATATATATGCACTGCCCATTCATGTACTACATGCACAAATGGACTTCATGAGTTAGCCCACCACTaGCTGGGCAGTGACACAAAT +
Preference number: 2 (lower is better)
Translates to: STYICTAHSCTTCTNGLHELAHH*LGSDTN
Trigger: ATTTGTGTCACTGCCCAGTCAGTGGTGGGCTAACTC...ATGAAGTCCATTTGTGCATGTAGTACATGAATGGGCAGTGCATATATATGTACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR GCA 90 bp CGCCCTTTGCCAAACGGTAAGCTTCGTTTTAAGATGTCTATAAATAAAGGACTACACGTGCTCTTCACCTaGACCTATGAGATGAGCTTC +
Preference number: 2 (lower is better)
Translates to: RPLPNGKLRFKMSINKGLHVLFT*TYEMSF
Trigger: GAAGCTCATCTCATAGGTGCAGGTGAAGAGCACGTG...TAGTCCTTTATTTATAGACATCTTAAAACGAAGCTTACCGTTTGGCAAAGGGCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CCA 90 bp GCTTTCTCATACAGTTGTAAGTACATATATATGCACTGCCCATTCATGTACTACGCCGTGGGTGTCACATaGCACACAGCATATGTGAAG +
Preference number: 2 (lower is better)
Translates to: AFSYSCKYIYMHCPFMYYAVGVT*HTAYVK
Trigger: CTTCACATATGCTGTGTGCCATGTGACACCCACGGC...GTAGTACATGAATGGGCAGTGCATATATATGTACTTACAACTGTATGAGAAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 90 bp CAAAACAACAGGCATAGGTTTAATCAAAAGCGACATGCAAGCATCTaGCTCTCACCACAGATCACTGAGACATTAAGAGTGACGTCTCTT +
Preference number: 2 (lower is better)
Translates to: QNNRHRFNQKRHASI*LSPQITETLRVTSL
Trigger: AAGAGACGTCACTCTTAATGTCTCAGTGATCTGTGGTGAGAGCAAGATGCTTGCATGTCGCTTTTGATTAAACCTATGCCTGTTGTTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp AACCTTATTTCACTGCTATTATCTGAACTGTGGCGAACCACCTTACTTCTGTATCTGGTAACTGTGGCATaGCATCTATACCCTGAAGGA +
Preference number: 2 (lower is better)
Translates to: NLISLLLSELWRTTLLLYLVTVA*HLYPEG
Trigger: TCCTTCAGGGTATAGATGTCATGCCACAGTTACCAG...ATACAGAAGTAAGGTGGTTCGCCACAGTTCAGATAATAGCAGTGAAATAAGGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp CCCAACAAATTTCAGCTGAAGTCTAAAATAAGGCTTTCTATGAGTCACACATCGCTCATTTGTTGGTACTaGGTGCTGAAGCAGAGAGAG +
Preference number: 2 (lower is better)
Translates to: PNKFQLKSKIRLSMSHTSLICWY*VLKQRE
Trigger: CTCTCTCTGCTTCAGCACTCAGTACCAACAAATGAG...CGATGTGTGACTCATAGAAAGCCTTATTTTAGACTTCAGCTGAAATTTGTTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 90 bp TGTCCTGGGTATCTTTTTGCCTTAAATATAACATGCACGAATACCTaGATCCTTGTTTCTTTCAGTCACAAAAGCCCACCCTGTCTTGTT +
Preference number: 2 (lower is better)
Translates to: CPGYLFALNITCTNT*ILVSFSHKSPPCLV
Trigger: AACAAGACAGGGTGGGCTTTTGTGACTGAAAGAAACAAGGATCAAGGTATTCGTGCATGTTATATTTAAGGCAAAAAGATACCCAGGACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp GCTTTCTCATACAGTTGTAAGTACATATATATGCACTGCCCATTCATGTACTACCTTCTGGAAGCCTCTTaGAGAATTCTGAGCAGCTAT +
Preference number: 2 (lower is better)
Translates to: AFSYSCKYIYMHCPFMYYLLEAS*RILSSY
Trigger: ATAGCTGCTCAGAATTCTTCAAGAGGCTTCCAGAAG...GTAGTACATGAATGGGCAGTGCATATATATGTACTTACAACTGTATGAGAAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp CGCCCTTTGCCAAACGGTAAGCTTCGTTTTAAGATGTCTATAAATAAAGGACTAATATTTAAGGACCATTaGTCTACGGAGAAGGAAGCC +
Preference number: 2 (lower is better)
Translates to: RPLPNGKLRFKMSINKGLIFKDH*STEKEA
Trigger: GGCTTCCTTCTCCGTAGATCAATGGTCCTTAAATAT...TAGTCCTTTATTTATAGACATCTTAAAACGAAGCTTACCGTTTGGCAAAGGGCG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CCA 90 bp GTAGATTCTTCTAGTAAACCACATGGGCATCTCCCCTGGTTATTATTTAGCATTTCGCTGAGAGACATATaGAAGGAAGATGGCATATCA +
Preference number: 2 (lower is better)
Translates to: VDSSSKPHGHLPWLLFSISLRDI*KEDGIS
Trigger: TGATATGCCATCTTCCTTCCATATGTCTCTCAGCGA...AATGCTAAATAATAACCAGGGGAGATGCCCATGTGGTTTACTAGAAGAATCTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 90 bp AATATGTCTTGCTTTCCCTGTTTTGTGATTCAAAAAGCATCTCATTaGTTGGTACTGAGTGCTGAAGCAGAGAGAGAAACCCTTTGGTTA +
Preference number: 2 (lower is better)
Translates to: NMSCFPCFVIQKASH*LVLSAEAERETLWL
Trigger: TAACCAAAGGGTTTCTCTCTCTGCTTCAGCACTCAGTACCAACAAATGAGATGCTTTTTGAATCACAAAACAGGGAAAGCAAGACATATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp GTAGATTCTTCTAGTAAACCACATGGGCATCTCCCCTGGTTATTATTTAGCATTTCAACTGGGTCTTCATaGAGTGCTTTTGGTTTCATA +
Preference number: 2 (lower is better)
Translates to: VDSSSKPHGHLPWLLFSISTGSS*SAFGFI
Trigger: TATGAAACCAAAAGCACTTCATGAAGACCCAGTTGA...AATGCTAAATAATAACCAGGGGAGATGCCCATGTGGTTTACTAGAAGAATCTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CCA 90 bp GTAGATTCTTCTAGTAAACCACATGGGCATCTCCCCTGGTTATTATTTAGCATTACACAGCCATCCTTGTaGTCATCTTGTATAATCTCT +
Preference number: 2 (lower is better)
Translates to: VDSSSKPHGHLPWLLFSITQPSL*SSCIIS
Trigger: AGAGATTATACAAGATGACCACAAGGATGGCTGTGT...AATGCTAAATAATAACCAGGGGAGATGCCCATGTGGTTTACTAGAAGAATCTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CCA 90 bp CGCCCTTTGCCAAACGGTAAGCTTCGTTTTAAGATGTCTATAAATAAAGGACTAGCAATTTTATTCTGGTaGTGTCTGTATGGTCAGCAA +
Preference number: 2 (lower is better)
Translates to: RPLPNGKLRFKMSINKGLAILFW*CLYGQQ
Trigger: TTGCTGACCATACAGACACCACCAGAATAAAATTGC...TAGTCCTTTATTTATAGACATCTTAAAACGAAGCTTACCGTTTGGCAAAGGGCG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CCA 90 bp AACCTTATTTCACTGCTATTATCTGAACTGTGGCGAACCACCTTACTTCTGTATGACATCATCCAAATGTaGGTTTCTCATGGAGTTGAT +
Preference number: 2 (lower is better)
Translates to: NLISLLLSELWRTTLLLYDIIQM*VSHGVD
Trigger: ATCAACTCCATGAGAAACCCACATTTGGATGATGTC...ATACAGAAGTAAGGTGGTTCGCCACAGTTCAGATAATAGCAGTGAAATAAGGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 90 bp TTCTGTATTGTTACAACGCTCAAGGACAGCTCTGTTTCAATGCCTTaGCAATTTAAATGCAATTTTATTCTGGTGGTGTCTGTATGGTCA +
Preference number: 2 (lower is better)
Translates to: FCIVTTLKDSSVSMP*QFKCNFILVVSVWS
Trigger: TGACCATACAGACACCACCAGAATAAAATTGCATTTAAATTGCAAAGGCATTGAAACAGAGCTGTCCTTGAGCGTTGTAACAATACAGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp GCTTTCTCATACAGTTGTAAGTACATATATATGCACTGCCCATTCATGTACTACGAGAGCACAGCTGTCTaGGTGAAAATTTGTCAATAT +
Preference number: 2 (lower is better)
Translates to: AFSYSCKYIYMHCPFMYYESTAV*VKICQY
Trigger: ATATTGACAAATTTTCACTCAGACAGCTGTGCTCTC...GTAGTACATGAATGGGCAGTGCATATATATGTACTTACAACTGTATGAGAAAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR TCA 90 bp CCCAACAAATTTCAGCTGAAGTCTAAAATAAGGCTTTCTATGAGTCACACATCGCCTGGTTTTAGCTTTTaGATTGTTGTGCCAAGATAT +
Preference number: 2 (lower is better)
Translates to: PNKFQLKSKIRLSMSHTSPGFSF*IVVPRY
Trigger: ATATCTTGGCACAACAATTCAAAAGCTAAAACCAGG...CGATGTGTGACTCATAGAAAGCCTTATTTTAGACTTCAGCTGAAATTTGTTGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR GCA 90 bp CGCCCTTTGCCAAACGGTAAGCTTCGTTTTAAGATGTCTATAAATAAAGGACTAGAAACCCTTTGGTTATaGTCAAGAAATGCTTTCACA +
Preference number: 2 (lower is better)
Translates to: RPLPNGKLRFKMSINKGLETLWL*SRNAFT
Trigger: TGTGAAAGCATTTCTTGAGCATAACCAAAGGGTTTC...TAGTCCTTTATTTATAGACATCTTAAAACGAAGCTTACCGTTTGGCAAAGGGCG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR GCA 90 bp AACCTTATTTCACTGCTATTATCTGAACTGTGGCGAACCACCTTACTTCTGTATTGGGTCTTCATGAAGTaGTTTTGGTTTCATACTTTG +
Preference number: 2 (lower is better)
Translates to: NLISLLLSELWRTTLLLYWVFMK*FWFHTL
Trigger: CAAAGTATGAAACCAAAAGCACTTCATGAAGACCCA...ATACAGAAGTAAGGTGGTTCGCCACAGTTCAGATAATAGCAGTGAAATAAGGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CCA 90 bp CGCCCTTTGCCAAACGGTAAGCTTCGTTTTAAGATGTCTATAAATAAAGGACTACATATGGAAGGAAGATaGCATATCAGAAAGAGATAC +
Preference number: 2 (lower is better)
Translates to: RPLPNGKLRFKMSINKGLHMEGR*HIRKRY
Trigger: GTATCTCTTTCTGATATGCCATCTTCCTTCCATATG...TAGTCCTTTATTTATAGACATCTTAAAACGAAGCTTACCGTTTGGCAAAGGGCG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CCA 90 bp AGTACATATATATGCACTGCCCATTCATGTACTACATGCACAAATGGACTTCATGAGAGAGAAACCCTTTaGTTATGCTCAAGAAATGCT +
Preference number: 2 (lower is better)
Translates to: STYICTAHSCTTCTNGLHERETL*LCSRNA
Trigger: AGCATTTCTTGAGCATAACCAAAGGGTTTCTCTCTC...ATGAAGTCCATTTGTGCATGTAGTACATGAATGGGCAGTGCATATATATGTACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR GCA 90 bp AGTACATATATATGCACTGCCCATTCATGTACTACATGCACAAATGGACTTCATATCTTGTATAATCTCTaGTGTATTTGGCAGAGAACT +
Preference number: 2 (lower is better)
Translates to: STYICTAHSCTTCTNGLHILYNL*CIWQRT
Trigger: AGTTCTCTGCCAAATACAGCAGAGATTATACAAGAT...ATGAAGTCCATTTGTGCATGTAGTACATGAATGGGCAGTGCATATATATGTACT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 72 bp CAGAGGGAACGGAGCCCAGCGCCATGTTCCTCTGTGTaGCTTTCGCTGAGCTACAGGTGGTCGAGTCTGCTG +
Preference number: 3 (lower is better)
Translates to: QRERSPAPCSSV*LSLSYRWSSLL
Trigger: CAGCAGACTCGACCACCTGTAGCTCAGCGAAAGCCACACAGAGGAACATGGCGCTGGGCTCCGTTCCCTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp CCACACCAGAGAATGTCCAGGGCCATGGTCACACCCTaGACATCCTGCCTACACCGTCAGCACCATCAGCCT +
Preference number: 3 (lower is better)
Translates to: PHQRMSRAMVTP*TSCLHRQHHQP
Trigger: AGGCTGATGGTGCTGACGGTGTAGGCAGGATGTTCAGGGTGTGACCATGGCCCTGGACATTCTCTGGTGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 72 bp CTTGTTCCGGAATCGTGCTTCACGTGTCCTAACGCATaGCACCTGCCACCGGACAATGTGGCTGAGTCTCTC +
Preference number: 3 (lower is better)
Translates to: LVPESCFTCPNA*HLPPDNVAESL
Trigger: GAGAGACTCAGCCACATTGTCCGGTGGCAGGTGGCATGCGTTAGGACACGTGAAGCACGATTCCGGAACAAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 72 bp GTGCTCTTCGCCTGCGCCCGTCACGTGCTCTTCACCTaGACCTATGAGATGAGCTTCTGTTCTTCTGCGATC +
Preference number: 3 (lower is better)
Translates to: VLFACARHVLFT*TYEMSFCSSAI
Trigger: GATCGCAGAAGAACAGAAGCTCATCTCATAGGTGCAGGTGAAGAGCACGTGACGGGCGCAGGCGAAGAGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 72 bp TCTTCTCTGCTGCCCATTCGCCACCATGGGCCAAGCTaGTCTTGGTACCTTCACTGCCGGGACAGATCATGT +
Preference number: 3 (lower is better)
Translates to: SSLLPIRHHGPS*SWYLHCRDRSC
Trigger: ACATGATCTGTCCCGGCAGTGAAGGTACCAAGAGCAGCTTGGCCCATGGTGGCGAATGGGCAGCAGAGAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp GCAGCTCGCCAGATGCCAAGGGCTGCCCATCCTCAGTaGCAAACAGTGAGAAACGTGCCCTCATGTTCTCTA +
Preference number: 3 (lower is better)
Translates to: AARQMPRAAHPQ*QTVRNVPSCSL
Trigger: TAGAGAACATGAGGGCACGTTTCTCACTGTTTGTCACTGAGGATGGGCAGCCCTTGGCATCTGGCGAGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp AGAGAGAGAGGTGTTCTTAGGAGGAAAGACCCAGCCTaGACGTGGGCAGCACCATTCCATGCGCTGAGGTGT +
Preference number: 3 (lower is better)
Translates to: RERGVLRRKDPA*TWAAPFHALRC
Trigger: ACACCTCAGCGCATGGAATGGTGCTGCCCACGTTCAGGCTGGGTCTTTCCTCCTAAGAACACCTCTCTCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 72 bp TGGGACACAGGAACACAGCTAACAATGCAGATCAGCTaGTGGGGGTGGCAGAATGTGCCGGCAATCATCCAG +
Preference number: 3 (lower is better)
Translates to: WDTGTQLTMQIS*WGWQNVPAIIQ
Trigger: CTGGATGATTGCCGGCACATTCTGCCACCCCCAGCAGCTGATCTGCATTGTTAGCTGTGTTCCTGTGTCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 72 bp AGAGTCAGTATCCACACCAGAGAATGTCCAGGGCCATaGTCACACCCTGAACATCCTGCCTACACCGTCAGC +
Preference number: 3 (lower is better)
Translates to: RVSIHTRECPGP*SHPEHPAYTVS
Trigger: GCTGACGGTGTAGGCAGGATGTTCAGGGTGTGACCATGGCCCTGGACATTCTCTGGTGTGGATACTGACTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 72 bp CTCTGGTCCGAGGAGACCCTATGCTGGTGGAGCCTGTaGGCCATGGTAGATTCTTCTAGTAAACCACATGGG +
Preference number: 3 (lower is better)
Translates to: LWSEETLCWWSL*AMVDSSSKPHG
Trigger: CCCATGTGGTTTACTAGAAGAATCTACCATGGCCCACAGGCTCCACCAGCATAGGGTCTCCTCGGACCAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 72 bp GGCACGGCGATCAGACTGGCGGCTTTTCCAGGTCCTTaGATCTCTATATATTGGGTGCATAGGATGCTGAGC +
Preference number: 3 (lower is better)
Translates to: GTAIRLAAFPGP*ISIYWVHRMLS
Trigger: GCTCAGCATCCTATGCACCCAATATATAGAGATGCAAGGACCTGGAAAAGCCGCCAGTCTGATCGCCGTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 72 bp TGTGCAACACAAGGAAACGAGCTCTTTGCAGCAGCCTaGGGGGCAAGGGTCTATCAACACCCAGGTTTCCAT +
Preference number: 3 (lower is better)
Translates to: CATQGNELFAAA*GARVYQHPGFH
Trigger: ATGGAAACCTGGGTGTTGATAGACCCTTGCCCCCCAGGCTGCTGCAAAGAGCTCGTTTCCTTGTGTTGCACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 72 bp CCATGTTCCTCTGTGTGGCTTTCGCTGAGCTACAGGTaGTCGAGTCTGCTGACACTGATTGCTACACTTGTG +
Preference number: 3 (lower is better)
Translates to: PCSSVWLSLSYR*SSLLTLIATLV
Trigger: CACAAGTGTAGCAATCAGTGTCAGCAGACTCGACCACCTGTAGCTCAGCGAAAGCCACACAGAGGAACATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 72 bp CTGGCGGCTTTTCCAGGTCCTTGCATCTCTATATATTaGGTGCATAGGATGCTGAGCACTGGCTCCCGAAGT +
Preference number: 3 (lower is better)
Translates to: LAAFPGPCISIY*VHRMLSTGSRS
Trigger: ACTTCGGGAGCCAGTGCTCAGCATCCTATGCACCCAATATATAGAGATGCAAGGACCTGGAAAAGCCGCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CAA 90 bp TTCCCAGAGGACAAAGCCCCTGACCAGCTCACTGCTGTGCATCTCAGTCTCTTGGGCTTTTCCAGGTCCTaGCATCTCTATATATTGGGT +
Preference number: 3 (lower is better)
Translates to: FPEDKAPDQLTAVHLSLLGFSRS*HLYILG
Trigger: ACCCAATATATAGAGATGCAAGGACCTGGAAAAGCC...CAAGAGACTGAGATGCACAGCAGTGAGCTGGTCAGGGGCTTTGTCCTCTGGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp ATAAGACTTGGGTGTCAGGACTGTCATCGGACCAGTTaGGCTGTTTCAGGTCCCCAAGTCTCACTCCTTAGC +
Preference number: 3 (lower is better)
Translates to: IRLGCQDCHRTS*AVSGPQVSLLS
Trigger: GCTAAGGAGTGAGACTTGGGGACCTGAAACAGCTCAACTGGTCCGATGACAGTCCTGACACCCAAGTCTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp GAGCCCGATGGATATAGTTTCCAGCTTCCCCACTTGTaGCAGTGCCACGTAAGTGGACTCTCAAACCATGCA +
Preference number: 3 (lower is better)
Translates to: EPDGYSFQLPHL*QCHVSGLSNHA
Trigger: TGCATGGTTTGAGAGTCCACTTACGTGGCACTGTCACAAGTGGGGAAGCTGGAAACTATATCCATCGGGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp ATTGGCGTAAGGAACACTGATGGCATTAACAAGGCATaGCTCTGCTGGCAAGGGTGTTCCCAGAGAGAGAGG +
Preference number: 3 (lower is better)
Translates to: IGVRNTDGINKA*LCWQGCSQRER
Trigger: CCTCTCTCTCTGGGAACACCCTTGCCAGCAGAGTCATGCCTTGTTAATGCCATCAGTGTTCCTTACGCCAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 72 bp GGAAAGCAACTCCTGAGCGTTGGTCAAAGCCCTCATTaGAAAGGCACTCAACTGGGTCTTCATGAAGTGCTT +
Preference number: 3 (lower is better)
Translates to: GKQLLSVGQSPH*KGTQLGLHEVL
Trigger: AAGCACTTCATGAAGACCCAGTTGAGTGCCTTTGCAATGAGGGCTTTGACCAACGCTCAGGAGTTGCTTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 72 bp CCATGGAGTCAAAGTGGCTGTAAAGCAGCATGCGTGTaGAATTCATCGACCAGCTACTGGAACATTGCGGTT +
Preference number: 3 (lower is better)
Translates to: PWSQSGCKAACV*NSSTSYWNIAV
Trigger: AACCGCAATGTTCCAGTAGCTGGTCGATGAATTCCACACGCATGCTGCTTTACAGCCACTTTGACTCCATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp CACCAAAATAGAGTTAGCCCACCACTGACTGGGCAGTaGCACAAATCAGGTTACACACTCCTGAAGGCATTC +
Preference number: 3 (lower is better)
Translates to: HQNRVSPPLTGQ*HKSGYTLLKAF
Trigger: GAATGCCTTCAGGAGTGTGTAACCTGATTTGTGTCACTGCCCAGTCAGTGGTGGGCTAACTCTATTTTGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp TTGGTACCTTCACTGCCGGGACAGATCATGTTCTTGTaGGCCCAAATGCTTACTCCTGTGGCTGAATTCTGT +
Preference number: 3 (lower is better)
Translates to: LVPSLPGQIMFL*AQMLTPVAEFC
Trigger: ACAGAATTCAGCCACAGGAGTAAGCATTTGGGCTCACAAGAACATGATCTGTCCCGGCAGTGAAGGTACCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp ACTCTTGTGGGTGTGGGTGTGGGATGTCTATCAGTGTaGCAGTGTAGGGTAGGAAAGATGCACATCTTAATG +
Preference number: 3 (lower is better)
Translates to: TLVGVGVGCLSV*QCRVGKMHILM
Trigger: CATTAAGATGTGCATCTTTCCTACCCTACACTGTCACACTGATAGACATCCCACACCCACACCCACAAGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp TCATCTGTAAGCACCAAAATAGAGTTAGCCCACCACTaGCTGGGCAGTGACACAAATCAGGTTACACACTCC +
Preference number: 3 (lower is better)
Translates to: SSVSTKIELAHH*LGSDTNQVTHS
Trigger: GGAGTGTGTAACCTGATTTGTGTCACTGCCCAGTCAGTGGTGGGCTAACTCTATTTTGGTGCTTACAGATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp GCAGAGAAAAGTATTACTTCAGAGGAAAGCAACTCCTaGGCGTTGGTCAAAGCCCTCATTGCAAAGGCACTC +
Preference number: 3 (lower is better)
Translates to: AEKSITSEESNS*ALVKALIAKAL
Trigger: GAGTGCCTTTGCAATGAGGGCTTTGACCAACGCTCAGGAGTTGCTTTCCTCTGAAGTAATACTTTTCTCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp TGGCTTTGGAAGAAGACAAATCAACAGGTCGAAGGTTaGGCTCCATGGAGTCAAAGTGGCTGTAAAGCAGCA +
Preference number: 3 (lower is better)
Translates to: WLWKKTNQQVEG*APWSQSGCKAA
Trigger: TGCTGCTTTACAGCCACTTTGACTCCATGGAGCTCAACCTTCGACCTGTTGATTTGTCTTCTTCCAAAGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 72 bp TCCCAGAGGACAAAGCCCCTGACCAGCTCACTGCTGTaGATCTCAGTCTCTTGTCTGTACATAAATGAATAT +
Preference number: 3 (lower is better)
Translates to: SQRTKPLTSSLL*ISVSCLYINEY
Trigger: ATATTCATTTATGTACAGACAAGAGACTGAGATGCACAGCAGTGAGCTGGTCAGGGGCTTTGTCCTCTGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 72 bp CACTGCCGGGACAGATCATGTTCTTGTGAGCCCAAATaGTTACTCCTGTGGCTGAATTCTGTCAGTTGTTTA +
Preference number: 3 (lower is better)
Translates to: HCRDRSCSCEPK*LLLWLNSVSCL
Trigger: TAAACAACTGACAGAATTCAGCCACAGGAGTAAGCATTTGGGCTCACAAGAACATGATCTGTCCCGGCAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 72 bp AAAGTATTACTTCAGAGGAAAGCAACTCCTGAGCGTTaGTCAAAGCCCTCATTGCAAAGGCACTCAACTGGG +
Preference number: 3 (lower is better)
Translates to: KVLLQRKATPER*SKPSLQRHSTG
Trigger: CCCAGTTGAGTGCCTTTGCAATGAGGGCTTTGACCAACGCTCAGGAGTTGCTTTCCTCTGAAGTAATACTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CAA 90 bp TCGCTGAGAGACATATGGAAGGAAGATGGCATATCAGAAAGAGATACCTCCCCTACTTCTGGAAGCCTCTaGAAGAATTCTGAGCAGCTA +
Preference number: 3 (lower is better)
Translates to: SLRDIWKEDGISERDTSPTSGSL*KNSEQL
Trigger: TAGCTGCTCAGAATTCTTCAAGAGGCTTCCAGAAGT...AGGGGAGGTATCTCTTTCTGATATGCCATCTTCCTTCCATATGTCTCTCAGCGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 72 bp ATGCGTGTGGAATTCATCGACCAGCTACTGGAACATTaGGGTTCTTGTTACATCTTTTCAGACTACCCTGAC +
Preference number: 3 (lower is better)
Translates to: MRVEFIDQLLEH*GSCYIFSDYPD
Trigger: GTCAGGGTAGTCTGAAAAGATGTAACAAGAACCGCAATGTTCCAGTAGCTGGTCGATGAATTCCACACGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 72 bp GAACTGTTGGCACGCCTAAGTTATTTCAGCATTTCTTaGTCAGCAGTTGTTCTCTTGGCTTCCTCTGGCAAA +
Preference number: 3 (lower is better)
Translates to: ELLARLSYFSIS*SAVVLLASSGK
Trigger: TTTGCCAGAGGAAGCCAAGAGAACAACTGCTGAGCAAGAAATGCTGAAATAACTTAGGCGTGCCAACAGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 72 bp TCTCTGCTTCCATTCCTATCCATTGTCCCCGAGCCCTaGAACAGAGCCACTGACAGAAACAAAAACATTAAA +
Preference number: 3 (lower is better)
Translates to: SLLPFLSIVPEP*NRATDRNKNIK
Trigger: TTTAATGTTTTTGTTTCTGTCAGTGGCTCTGTTCCAGGGCTCGGGGACAATGGATAGGAATGGAAGCAGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CAA 90 bp AGTACATATATATGCACTGCCCATTCATGTACTACATGCACAAATGGACTTCATCTGAGGCAGAGCAACTaGGGACACAGGAACACAGCT +
Preference number: 3 (lower is better)
Translates to: STYICTAHSCTTCTNGLHLRQSN*GHRNTA
Trigger: AGCTGTGTTCCTGTGTCCCAAGTTGCTCTGCCTCAG...ATGAAGTCCATTTGTGCATGTAGTACATGAATGGGCAGTGCATATATATGTACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 72 bp CCACAGGCTGGTAAAGCCGTGTCCTGGGTATCTTTTTaGCTTAAATATAACATGCACGAATACCTTGATCCT +
Preference number: 3 (lower is better)
Translates to: PQAGKAVSWVSF*LKYNMHEYLDP
Trigger: AGGATCAAGGTATTCGTGCATGTTATATTTAAGGCAAAAAGATACCCAGGACACGGCTTTACCAGCCTGTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 72 bp AATTACAGAATGCCTTCATTGCTACATTTAGGTAGGTaGCCTGAGGCTTTCGCTGAGAGACATATGGAAGGA +
Preference number: 3 (lower is better)
Translates to: NYRMPSLLHLGR*PEAFAERHMEG
Trigger: TCCTTCCATATGTCTCTCAGCGAAAGCCTCAGGCCACCTACCTAAATGTAGCAATGAAGGCATTCTGTAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 72 bp TCAAACCATGCATATCAATTGGATCTTGTGGCACACTaGGTGTTTGTATATACTGCAGAGGATGTGAGGCCT +
Preference number: 3 (lower is better)
Translates to: SNHAYQLDLVAH*VFVYTAEDVRP
Trigger: AGGCCTCACATCCTCTGCAGTATATACAAACACCCAGTGTGCCACAAGATCCAATTGATATGCATGGTTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 72 bp AAAGCAGCATGCGTGTGGAATTCATCGACCAGCTACTaGAACATTGCGGTTCTTGTTACATCTTTTCAGACT +
Preference number: 3 (lower is better)
Translates to: KAACVWNSSTSY*NIAVLVTSFQT
Trigger: AGTCTGAAAAGATGTAACAAGAACCGCAATGTTCCAGTAGCTGGTCGATGAATTCCACACGCATGCTGCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp GAGTACTCCAGAGTCTCTCACTCTCTTGTATGCCATTaGGTTGTGGTGTCTGTGTGTACATTTCCATTTTTC +
Preference number: 3 (lower is better)
Translates to: EYSRVSHSLVCH*VVVSVCTFPFF
Trigger: GAAAAATGGAAATGTACACACAGACACCACAACTCAATGGCATACAAGAGAGTGAGAGACTCTGGAGTACTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CAA 90 bp GTAGATTCTTCTAGTAAACCACATGGGCATCTCCCCTGGTTATTATTTAGCATTACCCTGAAGGATGACTaGGGACAGTGTTTGATAGTC +
Preference number: 3 (lower is better)
Translates to: VDSSSKPHGHLPWLLFSITLKDD*GQCLIV
Trigger: GACTATCAAACACTGTCCCAAGTCATCCTTCAGGGT...AATGCTAAATAATAACCAGGGGAGATGCCCATGTGGTTTACTAGAAGAATCTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CAA 90 bp CCCAACAAATTTCAGCTGAAGTCTAAAATAAGGCTTTCTATGAGTCACACATCGACTGCAGGCTTAAATTaGGACGCTGCCTTTTCCACA +
Preference number: 3 (lower is better)
Translates to: PNKFQLKSKIRLSMSHTSTAGLN*DAAFST
Trigger: TGTGGAAAAGGCAGCGTCCAAATTTAAGCCTGCAGT...CGATGTGTGACTCATAGAAAGCCTTATTTTAGACTTCAGCTGAAATTTGTTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CAA 90 bp CCCAACAAATTTCAGCTGAAGTCTAAAATAAGGCTTTCTATGAGTCACACATCGCTCTCTTGTATGCCATaGAGTTGTGGTGTCTGTGTG +
Preference number: 3 (lower is better)
Translates to: PNKFQLKSKIRLSMSHTSLSCMP*SCGVCV
Trigger: CACACAGACACCACAACTCAATGGCATACAAGAGAG...CGATGTGTGACTCATAGAAAGCCTTATTTTAGACTTCAGCTGAAATTTGTTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp TCTGGAAGCCTCTTGAAGAATTCTGAGCAGCTATCTTaGAAGGTAATCTTCGTGTTTTCTTTAGTCACAGCC +
Preference number: 3 (lower is better)
Translates to: SGSLLKNSEQLS*KVIFVFSLVTA
Trigger: GGCTGTGACTAAAGAAAACACGAAGATTACCTTTCAAGATAGCTGCTCAGAATTCTTCAAGAGGCTTCCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp AGAAGTCGTCACTTCTGGAAGCCTCTTGAAGAATTCTaGGCAGCTATCTTGAAAGGTAATCTTCGTGTTTTC +
Preference number: 3 (lower is better)
Translates to: RSRHFWKPLEEF*AAILKGNLRVF
Trigger: GAAAACACGAAGATTACCTTTCAAGATAGCTGCTCAGAATTCTTCAAGAGGCTTCCAGAAGTGACGACTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp GATTCAAAAAGCATCTCATTTGTTGGTACTGAGTGCTaGAGCAGAGAGAGAAACCCTTTGGTTATGCTCAAG +
Preference number: 3 (lower is better)
Translates to: DSKSISFVGTEC*SRERNPLVMLK
Trigger: CTTGAGCATAACCAAAGGGTTTCTCTCTCTGCTTCAGCACTCAGTACCAACAAATGAGATGCTTTTTGAATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 72 bp AGATCATGTTCTTGTGAGCCCAAATGCTTACTCCTGTaGCTGAATTCTGTCAGTTGTTTAAACACAGATAGG +
Preference number: 3 (lower is better)
Translates to: RSCSCEPKCLLL*LNSVSCLNTDR
Trigger: CCTATCTGTGTTTAAACAACTGACAGAATTCAGCCACAGGAGTAAGCATTTGGGCTCACAAGAACATGATCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CAA 90 bp CCCAACAAATTTCAGCTGAAGTCTAAAATAAGGCTTTCTATGAGTCACACATCGTACAGAATGCCTTCATaGCTACATTTAGGTAGGTGG +
Preference number: 3 (lower is better)
Translates to: PNKFQLKSKIRLSMSHTSYRMPS*LHLGRW
Trigger: CCACCTACCTAAATGTAGCAATGAAGGCATTCTGTA...CGATGTGTGACTCATAGAAAGCCTTATTTTAGACTTCAGCTGAAATTTGTTGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CAA 90 bp CGCCCTTTGCCAAACGGTAAGCTTCGTTTTAAGATGTCTATAAATAAAGGACTAAAAGCATCTCATTTGTaGGTACTGAGTGCTGAAGCA +
Preference number: 3 (lower is better)
Translates to: RPLPNGKLRFKMSINKGLKASHL*VLSAEA
Trigger: TGCTTCAGCACTCAGTACCAACAAATGAGATGCTTT...TAGTCCTTTATTTATAGACATCTTAAAACGAAGCTTACCGTTTGGCAAAGGGCG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CAA 90 bp AACCTTATTTCACTGCTATTATCTGAACTGTGGCGAACCACCTTACTTCTGTATATGACACAGCCATCCTaGTGGTCATCTTGTATAATC +
Preference number: 3 (lower is better)
Translates to: NLISLLLSELWRTTLLLYMTQPS*WSSCII
Trigger: GATTATACAAGATGACCACAAGGATGGCTGTGTCAT...ATACAGAAGTAAGGTGGTTCGCCACAGTTCAGATAATAGCAGTGAAATAAGGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp TCACCTGTATTCAAACCTTATTTCACTGCTATTATCTaGACTGTGGCGAACCACCTTACTTCTGTATGCTTC +
Preference number: 3 (lower is better)
Translates to: SPVFKPYFTAII*TVANHLTSVCF
Trigger: GAAGCATACAGAAGTAAGGTGGTTCGCCACAGTTCAGATAATAGCAGTGAAATAAGGTTTGAATACAGGTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 72 bp CTGAGTGCTGAAGCAGAGAGAGAAACCCTTTGGTTATaGTCAAGAAATGCTTTCACAGTATGTGTTATTACA +
Preference number: 3 (lower is better)
Translates to: LSAEAERETLWL*SRNAFTVCVIT
Trigger: TGTAATAACACATACTGTGAAAGCATTTCTTGAGCATAACCAAAGGGTTTCTCTCTCTGCTTCAGCACTCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CAA 90 bp AACCTTATTTCACTGCTATTATCTGAACTGTGGCGAACCACCTTACTTCTGTATACCTCAGAAACAATTTaGTGCCTATTCGGAGAAGAA +
Preference number: 3 (lower is better)
Translates to: NLISLLLSELWRTTLLLYTSETI*CLFGEE
Trigger: TTCTTCTCCGAATAGGCACAAAATTGTTTCTGAGGT...ATACAGAAGTAAGGTGGTTCGCCACAGTTCAGATAATAGCAGTGAAATAAGGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CAA 90 bp AACCTTATTTCACTGCTATTATCTGAACTGTGGCGAACCACCTTACTTCTGTATAGAGAAAGAGGCACTTaGCTACCTCAGAAACAATTT +
Preference number: 3 (lower is better)
Translates to: NLISLLLSELWRTTLLLYRERGT*LPQKQF
Trigger: AAATTGTTTCTGAGGTAGCAAAGTGCCTCTTTCTCT...ATACAGAAGTAAGGTGGTTCGCCACAGTTCAGATAATAGCAGTGAAATAAGGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp ACTAATTTACACAAATGCTACTCTATACATATATTCTaGGGCAGAGCAACTTGGGACACAGGAACACAGCTA +
Preference number: 3 (lower is better)
Translates to: TNLHKCYSIHIF*GRATWDTGTQL
Trigger: TAGCTGTGTTCCTGTGTCCCAAGTTGCTCTGCCTCAGAATATATGTATAGAGTAGCATTTGTGTAAATTAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp ACATTGCGGTTCTTGTTACATCTTTTCAGACTACCCTaGCTGGATAGACATCCAGTTTATCCTTGTATTCAA +
Preference number: 3 (lower is better)
Translates to: TLRFLLHLFRLP*LDRHPVYPCIQ
Trigger: TTGAATACAAGGATAAACTGGATGTCTATCCAGTCAGGGTAGTCTGAAAAGATGTAACAAGAACCGCAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 72 bp GACACAGCCATCCTTGTGGTCATCTTGTATAATCTCTaGTGTATTTGGCAGAGAACTCAATCATATACTAAT +
Preference number: 3 (lower is better)
Translates to: DTAILVVILYNL*CIWQRTQSYTN
Trigger: ATTAGTATATGATTGAGTTCTCTGCCAAATACAGCAGAGATTATACAAGATGACCACAAGGATGGCTGTGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 72 bp TCTCTTCCTGGCTTAACTGAAACTAGACCAGGACTTTaGCCTCTAGTTTATTTTCTTTCTATGCAGAGAATT +
Preference number: 3 (lower is better)
Translates to: SLPGLTETRPGL*PLVYFLSMQRI
Trigger: AATTCTCTGCATAGAAAGAAAATAAACTAGAGGGCAAAGTCCTGGTCTAGTTTCAGTTAAGCCAGGAAGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 72 bp TATTCAAACCTTATTTCACTGCTATTATCTGAACTGTaGCGAACCACCTTACTTCTGTATGCTTCAGCTGTT +
Preference number: 3 (lower is better)
Translates to: YSNLISLLLSEL*RTTLLLYASAV
Trigger: AACAGCTGAAGCATACAGAAGTAAGGTGGTTCGCCACAGTTCAGATAATAGCAGTGAAATAAGGTTTGAATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CAA 90 bp AACCTTATTTCACTGCTATTATCTGAACTGTGGCGAACCACCTTACTTCTGTATATCCTTGTGGTCATCTaGTATAATCTCTGCTGTATT +
Preference number: 3 (lower is better)
Translates to: NLISLLLSELWRTTLLLYILVVI*YNLCCI
Trigger: AATACAGCAGAGATTATACAAGATGACCACAAGGAT...ATACAGAAGTAAGGTGGTTCGCCACAGTTCAGATAATAGCAGTGAAATAAGGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR-3UTR CAA 90 bp CCCAACAAATTTCAGCTGAAGTCTAAAATAAGGCTTTCTATGAGTCACACATCGGATATTTATAGATGCTaGGTAGTGTCTCAGAAAACC +
Preference number: 3 (lower is better)
Translates to: PNKFQLKSKIRLSMSHTSDIYRC*VVSQKT
Trigger: GGTTTTCTGAGACACTACCAAGCATCTATAAATATC...CGATGTGTGACTCATAGAAAGCCTTATTTTAGACTTCAGCTGAAATTTGTTGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 72 bp TGTATTCAAATCACCTGTATTCAAACCTTATTTCACTaGTATTATCTGAACTGTGGCGAACCACCTTACTTC +
Preference number: 3 (lower is better)
Translates to: CIQITCIQTLFH*YYLNCGEPPYF
Trigger: GAAGTAAGGTGGTTCGCCACAGTTCAGATAATAGCAGTGAAATAAGGTTTGAATACAGGTGATTTGAATACA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR TCA 72 bp ACAAAAACATTAAAAGTATCTAAGCTTATAGGGTACTaGTCTATGACACAGCCATCCTTGTGGTCATCTTGT +
Preference number: 3 (lower is better)
Translates to: TKTLKVSKLIGY*SMTQPSLWSSC
Trigger: ACAAGATGACCACAAGGATGGCTGTGTCATAGATCAGTACCCTATAAGCTTAGATACTTTTAATGTTTTTGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 72 bp ATTAAATGCAGCCTGGTTTTAGCTTTTGAATTGTTGTaGCAAGATATTTATAGATGCTTGGTAGTGTCTCAG +
Preference number: 3 (lower is better)
Translates to: IKCSLVLAFELL*QDIYRCLVVSQ
Trigger: CTGAGACACTACCAAGCATCTATAAATATCTTGGCACAACAATTCAAAAGCTAAAACCAGGCTGCATTTAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR GCA 72 bp AGTACATATATATGCACTGCCCATTCATGTACTACATaGACAAATGGACTTCATGTTCATAAAGACAAACAT +
Preference number: 3 (lower is better)
Translates to: STYICTAHSCTT*TNGLHVHKDKH
Trigger: ATGTTTGTCTTTATGAACATGAAGTCCATTTGTGCATGTAGTACATGAATGGGCAGTGCATATATATGTACT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CCA 72 bp GAACCACCTTACTTCTGTATGCTTCAGCTGTTTATGTaGAATGACACTAATATTATGTATATACCACAGAAT +
Preference number: 3 (lower is better)
Translates to: EPPYFCMLQLFM*NDTNIMYIPQN
Trigger: ATTCTGTGGTATATACATAATATTAGTGTCATTCCACATAAACAGCTGAAGCATACAGAAGTAAGGTGGTTC
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS-3UTR GCA 90 bp TCCTGGCTTACAGAGGGAACGGAGCCCAGCGCCATGTTCCTCTGTGTGGCTTTCTCTCCAGATGCAGGATaGATGGTCTATCTCTTCCCC +
Preference number: 4 (lower is better)
Translates to: SWLTEGTEPSAMFLCVAFSPDAG*MVYLFP
Trigger: GGGGAAGAGATAGACCATGCATCCTGCATCTGGAGA...GAAAGCCACACAGAGGAACATGGCGCTGGGCTCCGTTCCCTCTGTAAGCCAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS-3UTR CCA 90 bp TTCCCAGAGGACAAAGCCCCTGACCAGCTCACTGCTGTGCATCTCAGTCTCTTGGCAAGAGAGGGACACTaGTATGTGACACAACTCGGA +
Preference number: 4 (lower is better)
Translates to: FPEDKAPDQLTAVHLSLLAREGH*YVTQLG
Trigger: TCCGAGTTGTGTCACATACCAGTGTCCCTCTCTTGC...CAAGAGACTGAGATGCACAGCAGTGAGCTGGTCAGGGGCTTTGTCCTCTGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS-3UTR CCA 90 bp TCCTGGCTTACAGAGGGAACGGAGCCCAGCGCCATGTTCCTCTGTGTGGCTTTCCTATTCTGTGCTTCTTaGCCCACTTGGCAAACACTT +
Preference number: 4 (lower is better)
Translates to: SWLTEGTEPSAMFLCVAFLFCAS*PTWQTL
Trigger: AAGTGTTTGCCAAGTGGGCCAAGAAGCACAGAATAG...GAAAGCCACACAGAGGAACATGGCGCTGGGCTCCGTTCCCTCTGTAAGCCAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS-3UTR CCA 90 bp CACGGCGATCAGACTGGCGGCTTTTCCAGGTCCTTGCATCTCTATATATTGGGTCTCAAAGCCCTTGGTTaGGGCGTTGTTCATTCTCCA +
Preference number: 4 (lower is better)
Translates to: HGDQTGGFSRSLHLYILGLKALG*GVVHSP
Trigger: TGGAGAATGAACAACGCCCCAACCAAGGGCTTTGAG...ACCCAATATATAGAGATGCAAGGACCTGGAAAAGCCGCCAGTCTGATCGCCGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 72 bp CAGGGAACTGTATTTCTCTGCTTCCATTCCTATCCATaGTCCCCGAGCCCTGGAACAGAGCCACTGACAGAA +
Preference number: 4 (lower is better)
Translates to: QGTVFLCFHSYP*SPSPGTEPLTE
Trigger: TTCTGTCAGTGGCTCTGTTCCAGGGCTCGGGGACAATGGATAGGAATGGAAGCAGAGAAATACAGTTCCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 72 bp GACATCTATACCCTGAAGGATGACTTGGGACAGTGTTaGATAGTCCACCATTTTCCAAGATGGGGAGCAGCC +
Preference number: 4 (lower is better)
Translates to: DIYTLKDDLGQC*IVHHFPRWGAA
Trigger: GGCTGCTCCCCATCTTGGAAAATGGTGGACTATCAAACACTGTCCCAAGTCATCCTTCAGGGTATAGATGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 72 bp CTGTCTATGCCATTCCAGACGACTGCAGGCTTAAATTaGGACGCTGCCTTTTCCACACACAGTGTGAGGAAA +
Preference number: 4 (lower is better)
Translates to: LSMPFQTTAGLN*DAAFSTHSVRK
Trigger: TTTCCTCACACTGTGTGTGGAAAAGGCAGCGTCCAAATTTAAGCCTGCAGTCGTCTGGAATGGCATAGACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 72 bp TGCACTGATGAGCCAAACAGGAAGGACTCCATGGCTTaGGAAGAAGACAAATCAACAGGTCGAAGGTTGAGC +
Preference number: 4 (lower is better)
Translates to: CTDEPNRKDSMA*EEDKSTGRRLS
Trigger: GCTCAACCTTCGACCTGTTGATTTGTCTTCTTCCAAAGCCATGGAGTCCTTCCTGTTTGGCTCATCAGTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS-3UTR CCA 90 bp CACGGCGATCAGACTGGCGGCTTTTCCAGGTCCTTGCATCTCTATATATTGGGTTACGGGGCATGTTCATaGAGAAGATATTCGTTACAC +
Preference number: 4 (lower is better)
Translates to: HGDQTGGFSRSLHLYILGYGACS*RRYSLH
Trigger: GTGTAACGAATATCTTCTCCATGAACATGCCCCGTA...ACCCAATATATAGAGATGCAAGGACCTGGAAAAGCCGCCAGTCTGATCGCCGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS-3UTR GCA 90 bp TCGCTGAGAGACATATGGAAGGAAGATGGCATATCAGAAAGAGATACCTCCCCTGTGAATACTATTCTGTaGTTCTTGGCCCACTTGGCA +
Preference number: 4 (lower is better)
Translates to: SLRDIWKEDGISERDTSPVNTIL*FLAHLA
Trigger: TGCCAAGTGGGCCAAGAAGCACAGAATAGTATTCAC...AGGGGAGGTATCTCTTTCTGATATGCCATCTTCCTTCCATATGTCTCTCAGCGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS-3UTR TCA 90 bp GTAGATTCTTCTAGTAAACCACATGGGCATCTCCCCTGGTTATTATTTAGCATTAACACTCTATCGCAGTaGGTCATCTGCTGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: VDSSSKPHGHLPWLLFSINTLSQ*VICCSV
Trigger: CACAGAGCAGCAGATGACTCACTGCGATAGAGTGTT...AATGCTAAATAATAACCAGGGGAGATGCCCATGTGGTTTACTAGAAGAATCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 72 bp ATGCTACTCTATACATATATTCTGAGGCAGAGCAACTaGGGACACAGGAACACAGCTAACAATGCAGATCAG +
Preference number: 4 (lower is better)
Translates to: MLLYTYILRQSN*GHRNTANNADQ
Trigger: CTGATCTGCATTGTTAGCTGTGTTCCTGTGTCCCAAGTTGCTCTGCCTCAGAATATATGTATAGAGTAGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 72 bp AGGCATAGGTTTAATCAAAAGCGACATGCAAGCATCTaGCTCTCACCACAGATCACTGAGACATTAAGAGTG +
Preference number: 4 (lower is better)
Translates to: RHRFNQKRHASI*LSPQITETLRV
Trigger: CACTCTTAATGTCTCAGTGATCTGTGGTGAGAGCAAGATGCTTGCATGTCGCTTTTGATTAAACCTATGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS-3UTR TCA 90 bp GTAGATTCTTCTAGTAAACCACATGGGCATCTCCCCTGGTTATTATTTAGCATTTTCTGCCCGACCATTTaGCCTGAATTTGACACGATG +
Preference number: 4 (lower is better)
Translates to: VDSSSKPHGHLPWLLFSIFCPTI*PEFDTM
Trigger: CATCGTGTCAAATTCAGGTCAAATGGTCGGGCAGAA...AATGCTAAATAATAACCAGGGGAGATGCCCATGTGGTTTACTAGAAGAATCTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS-3UTR GCA 90 bp CGCCCTTTGCCAAACGGTAAGCTTCGTTTTAAGATGTCTATAAATAAAGGACTATGGTTACAGTTCAGTTaGAAAGGCTCTTGGGTCCTC +
Preference number: 4 (lower is better)
Translates to: RPLPNGKLRFKMSINKGLWLQFS*KGSWVL
Trigger: GAGGACCCAAGAGCCTTTGCAACTGAACTGTAACCA...TAGTCCTTTATTTATAGACATCTTAAAACGAAGCTTACCGTTTGGCAAAGGGCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS-3UTR CCA 90 bp GCTTTCTCATACAGTTGTAAGTACATATATATGCACTGCCCATTCATGTACTACTCATCTGCTGCTCTGTaGTCACGTAGATCTGCGCAT +
Preference number: 4 (lower is better)
Translates to: AFSYSCKYIYMHCPFMYYSSAAL*SRRSAH
Trigger: ATGCGCAGATCTACGTGACCACAGAGCAGCAGATGA...GTAGTACATGAATGGGCAGTGCATATATATGTACTTACAACTGTATGAGAAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 72 bp GTACTGATCTATGACACAGCCATCCTTGTGGTCATCTaGTATAATCTCTGCTGTATTTGGCAGAGAACTCAA +
Preference number: 4 (lower is better)
Translates to: VLIYDTAILVVI*YNLCCIWQRTQ
Trigger: TTGAGTTCTCTGCCAAATACAGCAGAGATTATACAAGATGACCACAAGGATGGCTGTGTCATAGATCAGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 72 bp AGAGTACTCCAGAGTCTCTCACTCTCTTGTATGCCATaGAGTTGTGGTGTCTGTGTGTACATTTCCATTTTT +
Preference number: 4 (lower is better)
Translates to: RVLQSLSLSCMP*SCGVCVYISIF
Trigger: AAAAATGGAAATGTACACACAGACACCACAACTCAATGGCATACAAGAGAGTGAGAGACTCTGGAGTACTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 72 bp AACAGGAAGAGACCTATTTGTAGAGAAAGAGGCACTTaGCTACCTCAGAAACAATTTTGTGCCTATTCGGAG +
Preference number: 4 (lower is better)
Translates to: NRKRPICRERGT*LPQKQFCAYSE
Trigger: CTCCGAATAGGCACAAAATTGTTTCTGAGGTAGCAAAGTGCCTCTTTCTCTACAAATAGGTCTCTTCCTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 72 bp TCCTTGTTTCTTTCAGTCACAAAAGCCCACCCTGTCTaGTTAACCCACCCTCATTTCTCCTGTTATAAAAAG +
Preference number: 4 (lower is better)
Translates to: SLFLSVTKAHPV*LTHPHFSCYKK
Trigger: CTTTTTATAACAGGAGAAATGAGGGTGGGTTAACAAGACAGGGTGGGCTTTTGTGACTGAAAGAAACAAGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 72 bp ACTCCAGAGTCTCTCACTCTCTTGTATGCCATTGAGTaGTGGTGTCTGTGTGTACATTTCCATTTTTCTTTT +
Preference number: 4 (lower is better)
Translates to: TPESLTLLYAIE*WCLCVHFHFSF
Trigger: AAAAGAAAAATGGAAATGTACACACAGACACCACAACTCAATGGCATACAAGAGAGTGAGAGACTCTGGAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
3UTR CAA 72 bp AACATTAAATGCAGCCTGGTTTTAGCTTTTGAATTGTaGTGCCAAGATATTTATAGATGCTTGGTAGTGTCT +
Preference number: 4 (lower is better)
Translates to: NIKCSLVLAFEL*CQDIYRCLVVS
Trigger: AGACACTACCAAGCATCTATAAATATCTTGGCACAACAATTCAAAAGCTAAAACCAGGCTGCATTTAATGTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS GCA 90 bp CTCAAAGCCCTTGGTTGGGGCGTTGTTCATTCTCCAGATGCAGGATaGATGGTCTATCTCTTCCCCCACCTTCTGCCCGACCATTTGACC +
Preference number: 5 (lower is better)
Translates to: LKALGWGVVHSPDAG*MVYLFPHLLPDHLT
Trigger: GGTCAAATGGTCGGGCAGAAGGTGGGGGAAGAGATAGACCATGCATCCTGCATCTGGAGAATGAACAACGCCCCAACCAAGGGCTTTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064460.7
ENSMUST00000200397.5
CDS GCA 90 bp CATCTTCCTCAAAGCCCTTGGTTGGGGCGTTGTTCATTCTCCAGATaGAGGATGCATGGTCTATCTCTTCCCCCACCTTCTGCCCGACCA +
Preference number: 5 (lower is better)
Translates to: HLPQSPWLGRCSFSR*RMHGLSLPPPSARP
Trigger: TGGTCGGGCAGAAGGTGGGGGAAGAGATAGACCATGCATCCTGCATCTGGAGAATGAACAACGCCCCAACCAAGGGCTTTGAGGAAGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064460.7
ENSMUST00000200397.5
CDS-3UTR CAA 90 bp GGTCACACCCTGAACATCCTGCCTACACCGTCAGCACCATCAGCCTCTCTTCACGTGGTTACAGTTCAGTaGCAAAGGCTCTTGGGTCCT +
Preference number: 5 (lower is better)
Translates to: GHTLNILPTPSAPSASLHVVTVQ*QRLLGP
Trigger: AGGACCCAAGAGCCTTTGCAACTGAACTGTAACCAC...GTGAAGAGAGGCTGATGGTGCTGACGGTGTAGGCAGGATGTTCAGGGTGTGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS TCA 90 bp AATTTGACACGATGGCACAGTGGTTACAGTTCAGTTGCAAAGGCTTaGGGATGCAGGCCATGGCGCTATGGATCGACCCTGTGGCTCGCT +
Preference number: 5 (lower is better)
Translates to: NLTRWHSGYSSVAKA*GCRPWRYGSTLWLA
Trigger: AGCGAGCCACAGGGTCGATCCATAGCGCCATGGCCTGCATCCTCAAGCCTTTGCAACTGAACTGTAACCACTGTGCCATCGTGTCAAATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064460.7
CDS-3UTR CAA 90 bp GGTCACACCCTGAACATCCTGCCTACACCGTCAGCACCATCAGCCTCTCTTCACCCATTTGACCTGAATTaGACACGATGGCACAGTGGT +
Preference number: 5 (lower is better)
Translates to: GHTLNILPTPSAPSASLHPFDLN*TRWHSG
Trigger: ACCACTGTGCCATCGTGTCAAATTCAGGTCAAATGG...GTGAAGAGAGGCTGATGGTGCTGACGGTGTAGGCAGGATGTTCAGGGTGTGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS-3UTR CAA 90 bp TTCCCAGAGGACAAAGCCCCTGACCAGCTCACTGCTGTGCATCTCAGTCTCTTGGGCAAAGGGATCCATTaGGTCTTAGGCTGTCCAAAG +
Preference number: 5 (lower is better)
Translates to: FPEDKAPDQLTAVHLSLLGKGIH*VLGCPK
Trigger: CTTTGGACAGCCTAAGACCAAATGGATCCCTTTGCC...CAAGAGACTGAGATGCACAGCAGTGAGCTGGTCAGGGGCTTTGTCCTCTGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS TCA 90 bp CAGGATGCATGGTCTATCTCTTCCCCCACCTTCTGCCCGACCATTTaGCCTGAATTTGACACGATGGCACAGTGGTTACAGTTCAGTTGC +
Preference number: 5 (lower is better)
Translates to: QDAWSISSPTFCPTI*PEFDTMAQWLQFSC
Trigger: GCAACTGAACTGTAACCACTGTGCCATCGTGTCAAATTCAGGTCAAATGGTCGGGCAGAAGGTGGGGGAAGAGATAGACCATGCATCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064460.7
ENSMUST00000200397.5
CDS CCA 90 bp TCGGACCATTGTCATGTAGCCGACATCTTCCTCAAAGCCCTTGGTTaGGGCGTTGTTCATTCTCCAGATGCAGGATGCATGGTCTATCTC +
Preference number: 5 (lower is better)
Translates to: SDHCHVADIFLKALG*GVVHSPDAGCMVYL
Trigger: GAGATAGACCATGCATCCTGCATCTGGAGAATGAACAACGCCCCAACCAAGGGCTTTGAGGAAGATGTCGGCTACATGACAATGGTCCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064460.7
ENSMUST00000200397.5
CDS CCA 90 bp CAACTCGGACCATTGTCATGTAGCCGACATCTTCCTCAAAGCCCTTaGTTGGGGCGTTGTTCATTCTCCAGATGCAGGATGCATGGTCTA +
Preference number: 5 (lower is better)
Translates to: QLGPLSCSRHLPQSP*LGRCSFSRCRMHGL
Trigger: TAGACCATGCATCCTGCATCTGGAGAATGAACAACGCCCCAACCAAGGGCTTTGAGGAAGATGTCGGCTACATGACAATGGTCCGAGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064460.7
ENSMUST00000200397.5
CDS-3UTR CAA 90 bp CAGAAACAATCAACGGATGAGCTTCTGCCAGTTAGAAATGCAGTTAAGGGTGGCCCTCAAAGCCCTTGGTaGGGGCGTTGTTCATTCTCC +
Preference number: 5 (lower is better)
Translates to: QKQSTDELLPVRNAVKGGPQSPW*GRCSFS
Trigger: GGAGAATGAACAACGCCCCAACCAAGGGCTTTGAGG...GCCACCCTTAACTGCATTTCTAACTGGCAGAAGCTCATCCGTTGATTGTTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS-3UTR CAA 90 bp TCGCTGAGAGACATATGGAAGGAAGATGGCATATCAGAAAGAGATACCTCCCCTCCATCCTTCCTCATGTaGCGGAAAGGGCCCCAGATA +
Preference number: 5 (lower is better)
Translates to: SLRDIWKEDGISERDTSPPSFLM*RKGPQI
Trigger: TATCTGGGGCCCTTTCCGCAACATGAGGAAGGATGG...AGGGGAGGTATCTCTTTCTGATATGCCATCTTCCTTCCATATGTCTCTCAGCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS-3UTR CAA 90 bp CACGGCGATCAGACTGGCGGCTTTTCCAGGTCCTTGCATCTCTATATATTGGGTACTATTCTGTGCTTCTaGGCCCACTTGGCAAACACT +
Preference number: 5 (lower is better)
Translates to: HGDQTGGFSRSLHLYILGTILCF*AHLANT
Trigger: AGTGTTTGCCAAGTGGGCCAAGAAGCACAGAATAGT...ACCCAATATATAGAGATGCAAGGACCTGGAAAAGCCGCCAGTCTGATCGCCGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS-3UTR CAA 90 bp CACGGCGATCAGACTGGCGGCTTTTCCAGGTCCTTGCATCTCTATATATTGGGTGTCTTCTTTAACATGTaGTACACGATGCCATTACCA +
Preference number: 5 (lower is better)
Translates to: HGDQTGGFSRSLHLYILGVFFNM*YTMPLP
Trigger: TGGTAATGGCATCGTGTACAACATGTTAAAGAAGAC...ACCCAATATATAGAGATGCAAGGACCTGGAAAAGCCGCCAGTCTGATCGCCGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS-3UTR CAA 90 bp GTAGATTCTTCTAGTAAACCACATGGGCATCTCCCCTGGTTATTATTTAGCATTCCCTTGGTTGGGGCGTaGTTCATTCTCCAGATGCAG +
Preference number: 5 (lower is better)
Translates to: VDSSSKPHGHLPWLLFSIPLVGA*FILQMQ
Trigger: CTGCATCTGGAGAATGAACAACGCCCCAACCAAGGG...AATGCTAAATAATAACCAGGGGAGATGCCCATGTGGTTTACTAGAAGAATCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS-3UTR CAA 90 bp AGTACATATATATGCACTGCCCATTCATGTACTACATGCACAAATGGACTTCATACACAACTCGGACCATaGTCATGTAGCCGACATCTT +
Preference number: 5 (lower is better)
Translates to: STYICTAHSCTTCTNGLHTQLGP*SCSRHL
Trigger: AAGATGTCGGCTACATGACAATGGTCCGAGTTGTGT...ATGAAGTCCATTTGTGCATGTAGTACATGAATGGGCAGTGCATATATATGTACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS CCA 72 bp AGTTGCAAAGGCTTGAGGATGCAGGCCATGGCGCTATaGATCGACCCTGTGGCTCGCTGCACCTCGGCCCCG +
Preference number: 6 (lower is better)
Translates to: SCKGLRMQAMAL*IDPVARCTSAP
Trigger: CGGGGCCGAGGTGCAGCGAGCCACAGGGTCGATCCATAGCGCCATGGCCTGCATCCTCAAGCCTTTGCAACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064460.7
CDS TCA 72 bp CGATGGCACAGTGGTTACAGTTCAGTTGCAAAGGCTTaGGGATGCAGGCCATGGCGCTATGGATCGACCCTG +
Preference number: 6 (lower is better)
Translates to: RWHSGYSSVAKA*GCRPWRYGSTL
Trigger: CAGGGTCGATCCATAGCGCCATGGCCTGCATCCTCAAGCCTTTGCAACTGAACTGTAACCACTGTGCCATCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064460.7
CDS CAA 90 bp GAATTTGACACGATGGCACAGTGGTTACAGTTCAGTTGCAAAGGCTaGAGGATGCAGGCCATGGCGCTATGGATCGACCCTGTGGCTCGC +
Preference number: 6 (lower is better)
Translates to: EFDTMAQWLQFSCKG*RMQAMALWIDPVAR
Trigger: GCGAGCCACAGGGTCGATCCATAGCGCCATGGCCTGCATCCTCAAGCCTTTGCAACTGAACTGTAACCACTGTGCCATCGTGTCAAATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064460.7
CDS GCA 72 bp CCAGCCAGTGCTGAGGTAGGAGCCAGACTGGACTCTTaGTCTGAGGAATGGATGTTTTCTGGTTTCTGCAGC +
Preference number: 6 (lower is better)
Translates to: PASAEVGARLDS*SEEWMFSGFCS
Trigger: GCTGCAGAAACCAGAAAACATCCATTCCTCAGAGCAAGAGTCCAGTCTGGCTCCTACCTCAGCACTGGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199707.2
CDS CAA 72 bp ACGATGGCACAGTGGTTACAGTTCAGTTGCAAAGGCTaGAGGATGCAGGCCATGGCGCTATGGATCGACCCT +
Preference number: 6 (lower is better)
Translates to: TMAQWLQFSCKG*RMQAMALWIDP
Trigger: AGGGTCGATCCATAGCGCCATGGCCTGCATCCTCAAGCCTTTGCAACTGAACTGTAACCACTGTGCCATCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064460.7
CDS TCA 72 bp CAAAGCAGTTCAGGAGCAAAGGGAAAGTCGCATCATTaGCAAGGCGCATGGCTAGCAGCAAGATGCACAGGG +
Preference number: 6 (lower is better)
Translates to: QSSSGAKGKSHH*QGAWLAARCTG
Trigger: CCCTGTGCATCTTGCTGCTAGCCATGCGCCTTGTCAATGATGCGACTTTCCCTTTGCTCCTGAACTGCTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS GCA 72 bp CAAAGCCCTTGGTTGGGGCGTTGTTCATTCTCCAGATaGAGGATGCATGGTCTATCTCTTCCCCCACCTTCT +
Preference number: 6 (lower is better)
Translates to: QSPWLGRCSFSR*RMHGLSLPPPS
Trigger: AGAAGGTGGGGGAAGAGATAGACCATGCATCCTGCATCTGGAGAATGAACAACGCCCCAACCAAGGGCTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064460.7
ENSMUST00000200397.5
CDS CAA 90 bp CTCGGACCATTGTCATGTAGCCGACATCTTCCTCAAAGCCCTTGGTaGGGGCGTTGTTCATTCTCCAGATGCAGGATGCATGGTCTATCT +
Preference number: 6 (lower is better)
Translates to: LGPLSCSRHLPQSPW*GRCSFSRCRMHGLS
Trigger: AGATAGACCATGCATCCTGCATCTGGAGAATGAACAACGCCCCAACCAAGGGCTTTGAGGAAGATGTCGGCTACATGACAATGGTCCGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064460.7
ENSMUST00000200397.5
CDS CAA 90 bp TTAGGCTGTCCAAAGCAGTTCAGGAGCAAAGGGAAAGTCGCATCATaGACAAGGCGCATGGCTAGCAGCAAGATGCACAGGGCTATGAAG +
Preference number: 6 (lower is better)
Translates to: LGCPKQFRSKGKVAS*TRRMASSKMHRAMK
Trigger: CTTCATAGCCCTGTGCATCTTGCTGCTAGCCATGCGCCTTGTCAATGATGCGACTTTCCCTTTGCTCCTGAACTGCTTTGGACAGCCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS TCA 72 bp TGGTCTATCTCTTCCCCCACCTTCTGCCCGACCATTTaGCCTGAATTTGACACGATGGCACAGTGGTTACAG +
Preference number: 6 (lower is better)
Translates to: WSISSPTFCPTI*PEFDTMAQWLQ
Trigger: CTGTAACCACTGTGCCATCGTGTCAAATTCAGGTCAAATGGTCGGGCAGAAGGTGGGGGAAGAGATAGACCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064460.7
ENSMUST00000200397.5
CDS GCA 72 bp GAATTTGACACGATGGCACAGTGGTTACAGTTCAGTTaGAAAGGCTTGAGGATGCAGGCCATGGCGCTATGG +
Preference number: 6 (lower is better)
Translates to: EFDTMAQWLQFS*KGLRMQAMALW
Trigger: CCATAGCGCCATGGCCTGCATCCTCAAGCCTTTGCAACTGAACTGTAACCACTGTGCCATCGTGTCAAATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064460.7
CDS CCA 72 bp TGTCATGTAGCCGACATCTTCCTCAAAGCCCTTGGTTaGGGCGTTGTTCATTCTCCAGATGCAGGATGCATG +
Preference number: 6 (lower is better)
Translates to: CHVADIFLKALG*GVVHSPDAGCM
Trigger: CATGCATCCTGCATCTGGAGAATGAACAACGCCCCAACCAAGGGCTTTGAGGAAGATGTCGGCTACATGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064460.7
ENSMUST00000200397.5
CDS CCA 72 bp CCATTGTCATGTAGCCGACATCTTCCTCAAAGCCCTTaGTTGGGGCGTTGTTCATTCTCCAGATGCAGGATG +
Preference number: 6 (lower is better)
Translates to: PLSCSRHLPQSP*LGRCSFSRCRM
Trigger: CATCCTGCATCTGGAGAATGAACAACGCCCCAACCAAGGGCTTTGAGGAAGATGTCGGCTACATGACAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064460.7
ENSMUST00000200397.5
CDS CAA 72 bp CTTCCCCCACCTTCTGCCCGACCATTTGACCTGAATTaGACACGATGGCACAGTGGTTACAGTTCAGTTGCA +
Preference number: 6 (lower is better)
Translates to: LPPPSARPFDLN*TRWHSGYSSVA
Trigger: TGCAACTGAACTGTAACCACTGTGCCATCGTGTCAAATTCAGGTCAAATGGTCGGGCAGAAGGTGGGGGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064460.7
ENSMUST00000200397.5
CDS CAA 72 bp AGAGAGGGACACTGGTATGTGACACAACTCGGACCATaGTCATGTAGCCGACATCTTCCTCAAAGCCCTTGG +
Preference number: 6 (lower is better)
Translates to: REGHWYVTQLGP*SCSRHLPQSPW
Trigger: CCAAGGGCTTTGAGGAAGATGTCGGCTACATGACAATGGTCCGAGTTGTGTCACATACCAGTGTCCCTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064460.7
ENSMUST00000200397.5
CDS CAA 90 bp CAGGACAGCGTCCAGTTCGGGTGTGTGAATACTATTCTGTGCTTCTaGGCCCACTTGGCAAACACTTTCTTCTCGGTGATGAACCTGTGT +
Preference number: 6 (lower is better)
Translates to: QDSVQFGCVNTILCF*AHLANTFFSVMNLC
Trigger: ACACAGGTTCATCACCGAGAAGAAAGTGTTTGCCAAGTGGGCCAAGAAGCACAGAATAGTATTCACACACCCGAACTGGACGCTGTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199707.2
ENSMUST00000200397.5
CDS CAA 90 bp GGTCTATCTCTTCCCCCACCTTCTGCCCGACCATTTGACCTGAATTaGACACGATGGCACAGTGGTTACAGTTCAGTTGCAAAGGCTCTT +
Preference number: 6 (lower is better)
Translates to: GLSLPPPSARPFDLN*TRWHSGYSSVAKAL
Trigger: AAGAGCCTTTGCAACTGAACTGTAACCACTGTGCCATCGTGTCAAATTCAGGTCAAATGGTCGGGCAGAAGGTGGGGGAAGAGATAGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000200397.5
CDS GCA 72 bp GACAGCGTCCAGTTCGGGTGTGTGAATACTATTCTGTaGTTCTTGGCCCACTTGGCAAACACTTTCTTCTCG +
Preference number: 6 (lower is better)
Translates to: DSVQFGCVNTIL*FLAHLANTFFS
Trigger: CGAGAAGAAAGTGTTTGCCAAGTGGGCCAAGAAGCACAGAATAGTATTCACACACCCGAACTGGACGCTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199707.2
ENSMUST00000200397.5
CDS CAA 72 bp TTGTCATGTAGCCGACATCTTCCTCAAAGCCCTTGGTaGGGGCGTTGTTCATTCTCCAGATGCAGGATGCAT +
Preference number: 6 (lower is better)
Translates to: LSCSRHLPQSPW*GRCSFSRCRMH
Trigger: ATGCATCCTGCATCTGGAGAATGAACAACGCCCCAACCAAGGGCTTTGAGGAAGATGTCGGCTACATGACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064460.7
ENSMUST00000200397.5
CDS CAA 72 bp GTCCAGTTCGGGTGTGTGAATACTATTCTGTGCTTCTaGGCCCACTTGGCAAACACTTTCTTCTCGGTGATG +
Preference number: 6 (lower is better)
Translates to: VQFGCVNTILCF*AHLANTFFSVM
Trigger: CATCACCGAGAAGAAAGTGTTTGCCAAGTGGGCCAAGAAGCACAGAATAGTATTCACACACCCGAACTGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199707.2
ENSMUST00000200397.5
CDS CAA 72 bp GAGGAATGGATGTTTTCTGGTTTCTGCAGCAAACACTaGTCTGTAGTCGCAGGTGACTATTGTGGGAACAGC +
Preference number: 6 (lower is better)
Translates to: EEWMFSGFCSKH*SVVAGDYCGNS
Trigger: GCTGTTCCCACAATAGTCACCTGCGACTACAGACAAGTGTTTGCTGCAGAAACCAGAAAACATCCATTCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199707.2
CDS CCA 72 bp AAAAATAGTCAGGATTTTTCAGCAAGAGAGGGACACTaGTATGTGACACAACTCGGACCATTGTCATGTAGC +
Preference number: 6 (lower is better)
Translates to: KNSQDFSAREGH*YVTQLGPLSCS
Trigger: GCTACATGACAATGGTCCGAGTTGTGTCACATACCAGTGTCCCTCTCTTGCTGAAAAATCCTGACTATTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000064460.7
ENSMUST00000200397.5