Pregenerated sensors for ST13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022403Ensembl transcript IDs: ENSMUST00000172107.8
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACGCATGCTCTGTTCAAATACAGCTTTTTCTTACATGTAACAAGATaGATCTGTGCCCGCTGTATGCAGCAGTTAAACCTGCACAGACAT | + |
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Preference number: 1 (lower is better) Translates to: THALFKYSFFLHVTR*ICARCMQQLNLHRH Trigger: ATGTCTGTGCAGGTTTAACTGCTGCATACAGCGGGCACAGATGCATCTTGTTACATGTAAGAAAAAGCTGTATTTGAACAGAGCATGCGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| 3UTR-3UTR CCA 90 bp | CACCATGGAAACTGTATGAAAGGAGAGCACACTTGGACTAAGAACCGTGCAAAGAGGTCAAACAAAACCTaGGACTGCTGCTGCTCTGCC | + |
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Preference number: 2 (lower is better) Translates to: HHGNCMKGEHTWTKNRAKRSNKT*DCCCSA Trigger: GGCAGAGCAGCAGCAGTCCCAGGTTTTGTTTGACCT...CTTTGCACGGTTCTTAGTCCAAGTGTGCTCTCCTTTCATACAGTTTCCATGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| 3UTR-3UTR GCA 90 bp | CACCATGGAAACTGTATGAAAGGAGAGCACACTTGGACTAAGAACCGTGCAAAGAACAAAACCTGGGACTaGTGCTGCTCTGCCCAATAC | + |
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Preference number: 2 (lower is better) Translates to: HHGNCMKGEHTWTKNRAKNKTWD*CCSAQY Trigger: GTATTGGGCAGAGCAGCAGCAGTCCCAGGTTTTGTT...CTTTGCACGGTTCTTAGTCCAAGTGTGCTCTCCTTTCATACAGTTTCCATGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| 3UTR-3UTR GCA 90 bp | CACCATGGAAACTGTATGAAAGGAGAGCACACTTGGACTAAGAACCGTGCAAAGATCCACTCACCTCCCTaGCCAGTAATTCAAAAGGAA | + |
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Preference number: 2 (lower is better) Translates to: HHGNCMKGEHTWTKNRAKIHSPP*PVIQKE Trigger: TTCCTTTTGAATTACTGGGCAGGGAGGTGAGTGGAT...CTTTGCACGGTTCTTAGTCCAAGTGTGCTCTCCTTTCATACAGTTTCCATGGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| 3UTR-3UTR GCA 90 bp | TCAGTAAAGCACTCACACCATGGAAACTGTATGAAAGGAGAGCACACTTGGACTAAAACCTGGGACTGCTaGTGCTCTGCCCAATACTTT | + |
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Preference number: 2 (lower is better) Translates to: SVKHSHHGNCMKGEHTWTKTWDC*CSAQYF Trigger: AAAGTATTGGGCAGAGCAGCAGCAGTCCCAGGTTTT...AGTCCAAGTGTGCTCTCCTTTCATACAGTTTCCATGGTGTGAGTGCTTTACTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| 3UTR-3UTR TCA 90 bp | ATTGGGTCATGTGTAGTCAGAGTACAAAAGAAACAGATCTTCAGTAAAGCACTCAGGAAAGGTCATTTCTaGCAAAAACAGAAAGCACTC | + |
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Preference number: 2 (lower is better) Translates to: IGSCVVRVQKKQIFSKALRKGHF*QKQKAL Trigger: GAGTGCTTTCTGTTTTTGTCAGAAATGACCTTTCCT...GAGTGCTTTACTGAAGATCTGTTTCTTTTGTACTCTGACTACACATGACCCAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| 3UTR-3UTR GCA 90 bp | ATTGGGTCATGTGTAGTCAGAGTACAAAAGAAACAGATCTTCAGTAAAGCACTCTCATTTTCTTTATCCTaGGGCAGGAGAGAAAACAAG | + |
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Preference number: 2 (lower is better) Translates to: IGSCVVRVQKKQIFSKALSFSLS*GRRENK Trigger: CTTGTTTTCTCTCCTGCCGCAGGATAAAGAAAATGA...GAGTGCTTTACTGAAGATCTGTTTCTTTTGTACTCTGACTACACATGACCCAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| 3UTR-3UTR CCA 90 bp | ATTGGGTCATGTGTAGTCAGAGTACAAAAGAAACAGATCTTCAGTAAAGCACTCCTCTTTTTCTCTATGTaGGAATGCTACAGAACATTT | + |
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Preference number: 2 (lower is better) Translates to: IGSCVVRVQKKQIFSKALLFFSM*ECYRTF Trigger: AAATGTTCTGTAGCATTCCCACATAGAGAAAAAGAG...GAGTGCTTTACTGAAGATCTGTTTCTTTTGTACTCTGACTACACATGACCCAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| 3UTR GCA 72 bp | AAATGCAGCCTACACAGGTCAAACAAAACCTGGGACTaGTGCTGCTCTGCCCAATACTTTAGTCCTACCAAG | + |
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Preference number: 3 (lower is better) Translates to: KCSLHRSNKTWD*CCSAQYFSPTK Trigger: CTTGGTAGGACTAAAGTATTGGGCAGAGCAGCAGCAGTCCCAGGTTTTGTTTGACCTGTGTAGGCTGCATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| 3UTR CCA 72 bp | AGATTTAAATGCAGCCTACACAGGTCAAACAAAACCTaGGACTGCTGCTGCTCTGCCCAATACTTTAGTCCT | + |
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Preference number: 3 (lower is better) Translates to: RFKCSLHRSNKT*DCCCSAQYFSP Trigger: AGGACTAAAGTATTGGGCAGAGCAGCAGCAGTCCCAGGTTTTGTTTGACCTGTGTAGGCTGCATTTAAATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| 3UTR TCA 72 bp | GAAAACACTACCTGTAGCTCAAGAAGATTCAGAGGGTaGCAAGCAGACAGGGCATTTTCTAATAGGAAAGGT | + |
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Preference number: 3 (lower is better) Translates to: ENTTCSSRRFRG*QADRAFSNRKG Trigger: ACCTTTCCTATTAGAAAATGCCCTGTCTGCTTGTCACCCTCTGAATCTTCTTGAGCTACAGGTAGTGTTTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| 3UTR GCA 72 bp | CTGTTCAAATACAGCTTTTTCTTACATGTAACAAGATaGATCTGTGCCCGCTGTATGCAGCAGTTAAACCTG | + |
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Preference number: 3 (lower is better) Translates to: LFKYSFFLHVTR*ICARCMQQLNL Trigger: CAGGTTTAACTGCTGCATACAGCGGGCACAGATGCATCTTGTTACATGTAAGAAAAAGCTGTATTTGAACAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| 3UTR CCA 72 bp | TCACACCATGGAAACTGTATGAAAGGAGAGCACACTTaGACTAAGAACCGTGCAAAGTTCCAATTTAAGATT | + |
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Preference number: 3 (lower is better) Translates to: SHHGNCMKGEHT*TKNRAKFQFKI Trigger: AATCTTAAATTGGAACTTTGCACGGTTCTTAGTCCAAGTGTGCTCTCCTTTCATACAGTTTCCATGGTGTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| 3UTR TCA 72 bp | AGCATAGCTAAAACCAAAGGAAATCCTTCCTTCAAATaGCTGTGGACAGAGGTCACAAGGGTAAGTTTAATA | + |
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Preference number: 3 (lower is better) Translates to: SIAKTKGNPSFK*LWTEVTRVSLI Trigger: TATTAAACTTACCCTTGTGACCTCTGTCCACAGTCATTTGAAGGAAGGATTTCCTTTGGTTTTAGCTATGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| CDS-3UTR GCA 90 bp | GAAGATTCAGAGGGTGACAAGCAGACAGGGCATTTTCTAATAGGAAAGGTCATTCATCCCTGCCATCCCTaGCATTCCTGGCATGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: EDSEGDKQTGHFLIGKVIHPCHP*HSWHGP Trigger: GGGGCCATGCCAGGAATGGCAGGGATGGCAGGGATG...AATGACCTTTCCTATTAGAAAATGCCCTGTCTGCTTGTCACCCTCTGAATCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| CDS-3UTR GCA 90 bp | GAAGATTCAGAGGGTGACAAGCAGACAGGGCATTTTCTAATAGGAAAGGTCATTGAGTCCAGGCATCCCTaGCATCCCTGCCATTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: EDSEGDKQTGHFLIGKVIESRHP*HPCHSW Trigger: CCAGGAATGGCAGGGATGGCAGGGATGCCTGGACTC...AATGACCTTTCCTATTAGAAAATGCCCTGTCTGCTTGTCACCCTCTGAATCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| CDS-3UTR GCA 90 bp | CATCCACTCACCTCCCTGCCCAGTAATTCAAAAGGAAAAGCCCAAGTTAGTAAAGGCAAGGTCATGAGCTaGTTCCTCCCAGTGACCCAA | + |
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Preference number: 4 (lower is better) Translates to: HPLTSLPSNSKGKAQVSKGKVMS*FLPVTQ Trigger: TTGGGTCACTGGGAGGAAGCAGCTCATGACCTTGCC...TTTACTAACTTGGGCTTTTCCTTTTGAATTACTGGGCAGGGAGGTGAGTGGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| CDS-3UTR GCA 90 bp | ATTGGGTCATGTGTAGTCAGAGTACAAAAGAAACAGATCTTCAGTAAAGCACTCAGGACGCTCGGGTCCTaGCTACACATCTTCACGAAG | + |
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Preference number: 4 (lower is better) Translates to: IGSCVVRVQKKQIFSKALRTLGS*LHIFTK Trigger: CTTCGTGAAGATGTGTAGGCAGGACCCGAGCGTCCT...GAGTGCTTTACTGAAGATCTGTTTCTTTTGTACTCTGACTACACATGACCCAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| CDS-3UTR TCA 90 bp | ATTGGGTCATGTGTAGTCAGAGTACAAAAGAAACAGATCTTCAGTAAAGCACTCCGCCATTTGTATGGCTaGGCGGAATCAGGGTTTATT | + |
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Preference number: 4 (lower is better) Translates to: IGSCVVRVQKKQIFSKALRHLYG*AESGFI Trigger: AATAAACCCTGATTCCGCTCAGCCATACAAATGGCG...GAGTGCTTTACTGAAGATCTGTTTCTTTTGTACTCTGACTACACATGACCCAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| CDS-3UTR TCA 90 bp | GAAGATTCAGAGGGTGACAAGCAGACAGGGCATTTTCTAATAGGAAAGGTCATTCTTGGTGTTTTCTTCTaGCTTAGCTTTATGAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: EDSEGDKQTGHFLIGKVILGVFF*LSFMSS Trigger: GCTACTCATAAAGCTAAGTCAGAAGAAAACACCAAG...AATGACCTTTCCTATTAGAAAATGCCCTGTCTGCTTGTCACCCTCTGAATCTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| CDS-3UTR CAA 90 bp | GAAGATTCAGAGGGTGACAAGCAGACAGGGCATTTTCTAATAGGAAAGGTCATTGATCGCTCTCCTCGCTaGATAGCTCCTCTGTCTTTA | + |
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Preference number: 5 (lower is better) Translates to: EDSEGDKQTGHFLIGKVIDRSPR*IAPLSL Trigger: TAAAGACAGAGGAGCTATCAAGCGAGGAGAGCGATC...AATGACCTTTCCTATTAGAAAATGCCCTGTCTGCTTGTCACCCTCTGAATCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| CDS-3UTR CAA 90 bp | AATTATGCTGTGAGTGACAGAAGTGATGATGGTACTGAAAACACTACCTGTAGCGGACTTCTCTCAGCATaGCACTGGCATCCTCGTCAT | + |
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Preference number: 5 (lower is better) Translates to: NYAVSDRSDDGTENTTCSGLLSA*HWHPRH Trigger: ATGACGAGGATGCCAGTGCAATGCTGAGAGAAGTCC...GCTACAGGTAGTGTTTTCAGTACCATCATCACTTCTGTCACTCACAGCATAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| CDS-3UTR CAA 90 bp | AAGGTCATTTCTGACAAAAACAGAAAGCACTCTTTTTCTCTATGTGGGAATGCTTTTTTGAGCCCGAGGTaGGACTTCTCTCAGCATTGC | + |
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Preference number: 5 (lower is better) Translates to: KVISDKNRKHSFSLCGNAFLSPR*DFSQHC Trigger: GCAATGCTGAGAGAAGTCCAACCTCGGGCTCAAAAA...AGCATTCCCACATAGAGAAAAAGAGTGCTTTCTGTTTTTGTCAGAAATGACCTT 42% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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| CDS-3UTR CAA 90 bp | AAGGTCATTTCTGACAAAAACAGAAAGCACTCTTTTTCTCTATGTGGGAATGCTGGTTGCTCTGATATTTaGACATATTTGATGGGTTCT | + |
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Preference number: 5 (lower is better) Translates to: KVISDKNRKHSFSLCGNAGCSDI*TYLMGS Trigger: AGAACCCATCAAATATGTCAAAATATCAGAGCAACC...AGCATTCCCACATAGAGAAAAAGAGTGCTTTCTGTTTTTGTCAGAAATGACCTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000172107.8 |
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