Pregenerated sensors for SSXB9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068218Ensembl transcript IDs: ENSMUST00000115584.2
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS-3UTR TCA 90 bp | CAAAGCTGGAGCTGTAATGTTGAATTGCCACTCCATCCTTCTTCCACCGTGGCCTCATCATCACTGTCATaGTCTTCAATGCCTTCGACC | + |
Preference number: 4 (lower is better) Translates to: QSWSCNVELPLHPSSTVASSSLS*SSMPST Trigger: GGTCGAAGGCATTGAAGATCATGACAGTGATGATGA...GGCCACGGTGGAAGAAGGATGGAGTGGCAATTCAACATTACAGCTCCAGCTTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |
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CDS-3UTR CCA 90 bp | GCTGGAGCTGTAATGTTGAATTGCCACTCCATCCTTCTTCCACCGTGGCCTTATCATAAAGCACTTCCATaGGGACCTTTTCACAGGAAC | + |
Preference number: 4 (lower is better) Translates to: AGAVMLNCHSILLPPWPYHKALP*GPFHRN Trigger: GTTCCTGTGAAAAGGTCCCCATGGAAGTGCTTTATG...ATAAGGCCACGGTGGAAGAAGGATGGAGTGGCAATTCAACATTACAGCTCCAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |
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CDS-3UTR GCA 90 bp | GCTGGAGCTGTAATGTTGAATTGCCACTCCATCCTTCTTCCACCGTGGCCTTATAATGCCACTAGTTTCTaGCAAGTTGGAATCATTCTT | + |
Preference number: 4 (lower is better) Translates to: AGAVMLNCHSILLPPWPYNATSF*QVGIIL Trigger: AAGAATGATTCCAACTTGGCAGAAACTAGTGGCATT...ATAAGGCCACGGTGGAAGAAGGATGGAGTGGCAATTCAACATTACAGCTCCAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |
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3UTR CAA 72 bp | TATTTAGTCTTTCAAAGCTGGAGCTGTAATGTTGAATaGCCACTCCATCCTTCTTCCACCGTGGCCTTATTT | + |
Preference number: 4 (lower is better) Translates to: YLVFQSWSCNVE*PLHPSSTVALF Trigger: AAATAAGGCCACGGTGGAAGAAGGATGGAGTGGCAATTCAACATTACAGCTCCAGCTTTGAAAGACTAAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |
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CDS-3UTR CCA 90 bp | GTCTTTCAAAGCTGGAGCTGTAATGTTGAATTGCCACTCCATCCTTCTTCCACCCTTGCAGATATTCTTTaGTTCATAAAGCACTTCCAT | + |
Preference number: 4 (lower is better) Translates to: VFQSWSCNVELPLHPSSTLADIL*FIKHFH Trigger: ATGGAAGTGCTTTATGAACCAAAGAATATCTGCAAG...GGTGGAAGAAGGATGGAGTGGCAATTCAACATTACAGCTCCAGCTTTGAAAGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |
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CDS-3UTR CCA 90 bp | AGCTGTAATGTTGAATTGCCACTCCATCCTTCTTCCACCGTGGCCTTATTTCAATATGTAGAAATATCCTaGAAGGCCTTGCAGATATTC | + |
Preference number: 4 (lower is better) Translates to: SCNVELPLHPSSTVALFQYVEIS*KALQIF Trigger: GAATATCTGCAAGGCCTTCCAGGATATTTCTACATA...TTGAAATAAGGCCACGGTGGAAGAAGGATGGAGTGGCAATTCAACATTACAGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |
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CDS-3UTR CAA 90 bp | TTTCAAAGCTGGAGCTGTAATGTTGAATTGCCACTCCATCCTTCTTCCACCGTGTCGACCAGGGATTGCTaGTCCTGCTCCTTGCCACGC | + |
Preference number: 5 (lower is better) Translates to: FQSWSCNVELPLHPSSTVSTRDC*SCSLPR Trigger: GCGTGGCAAGGAGCAGGACAAGCAATCCCTGGTCGA...CACGGTGGAAGAAGGATGGAGTGGCAATTCAACATTACAGCTCCAGCTTTGAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |
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CDS-3UTR CAA 90 bp | GCTGGAGCTGTAATGTTGAATTGCCACTCCATCCTTCTTCCACCGTGGCCTTATCTAGTTTCTGCCAAGTaGGAATCATTCTTTACAGAG | + |
Preference number: 5 (lower is better) Translates to: AGAVMLNCHSILLPPWPYLVSAK*ESFFTE Trigger: CTCTGTAAAGAATGATTCCAACTTGGCAGAAACTAG...ATAAGGCCACGGTGGAAGAAGGATGGAGTGGCAATTCAACATTACAGCTCCAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |
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CDS CCA 90 bp | AGAGAAGTATGTAGAAATATCCTGGAAGGCCTTGCAGATATTCTTTaGTTCATAAAGCACTTCCATGGGGACCTTTTCACAGGAACTCAC | + |
Preference number: 5 (lower is better) Translates to: REVCRNILEGLADIL*FIKHFHGDLFTGTH Trigger: GTGAGTTCCTGTGAAAAGGTCCCCATGGAAGTGCTTTATGAACCAAAGAATATCTGCAAGGCCTTCCAGGATATTTCTACATACTTCTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |
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CDS TCA 90 bp | TACAGAGGCAAGGCTTCCTTCTACATTATGAATACTTATTGTCACTaGTGTCAGCTTCATTCGTTTTCTCGGTGTCACACCAAAAGATCC | + |
Preference number: 5 (lower is better) Translates to: YRGKASFYIMNTYCH*CQLHSFSRCHTKRS Trigger: GGATCTTTTGGTGTGACACCGAGAAAACGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCCTCTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |
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CDS TCA 90 bp | AAGTTGGAATCATTCTTTACAGAGGCAAGGCTTCCTTCTACATTATaGATACTTATTGTCACTGATGTCAGCTTCATTCGTTTTCTCGGT | + |
Preference number: 5 (lower is better) Translates to: KLESFFTEARLPSTL*ILIVTDVSFIRFLG Trigger: ACCGAGAAAACGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCCTCTGTAAAGAATGATTCCAACTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |
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CDS CAA 72 bp | CGATACTTCCTCTCTCGCAGCCGGTGGCTCCAAACATaGACCCGAATGCCACTAGTTTCTGCCAAGTTGGAA | + |
Preference number: 6 (lower is better) Translates to: RYFLSRSRWLQT*TRMPLVSAKLE Trigger: TTCCAACTTGGCAGAAACTAGTGGCATTCGGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |
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CDS CAA 72 bp | ATCACTGTCATGATCTTCAATGCCTTCGACCAGGGATaGCTTGTCCTGCTCCTTGCCACGCATGAAAACTGG | + |
Preference number: 6 (lower is better) Translates to: ITVMIFNAFDQG*LVLLLATHENW Trigger: CCAGTTTTCATGCGTGGCAAGGAGCAGGACAAGCAATCCCTGGTCGAAGGCATTGAAGATCATGACAGTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |
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CDS CAA 90 bp | GCATTCATCATCACTGTCATGATCTTCAATGCCTTCGACCAGGGATaGCTTGTCCTGCTCCTTGCCACGCATGAAAACTGGTTGGTTCAC | + |
Preference number: 6 (lower is better) Translates to: AFIITVMIFNAFDQG*LVLLLATHENWLVH Trigger: GTGAACCAACCAGTTTTCATGCGTGGCAAGGAGCAGGACAAGCAATCCCTGGTCGAAGGCATTGAAGATCATGACAGTGATGATGAATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |
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CDS CCA 72 bp | TCATATATCACTCGATACTTCCTCTCTCGCAGCCGGTaGCTCCAAACATTGACCCGAATGCCACTAGTTTCT | + |
Preference number: 6 (lower is better) Translates to: SYITRYFLSRSR*LQTLTRMPLVS Trigger: AGAAACTAGTGGCATTCGGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGTGATATATGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |
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CDS CAA 90 bp | TATATCACTCGATACTTCCTCTCTCGCAGCCGGTGGCTCCAAACATaGACCCGAATGCCACTAGTTTCTGCCAAGTTGGAATCATTCTTT | + |
Preference number: 6 (lower is better) Translates to: YITRYFLSRSRWLQT*TRMPLVSAKLESFF Trigger: AAAGAATGATTCCAACTTGGCAGAAACTAGTGGCATTCGGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGTGATATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |
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CDS CAA 72 bp | CAAACATTGACCCGAATGCCACTAGTTTCTGCCAAGTaGGAATCATTCTTTACAGAGGCAAGGCTTCCTTCT | + |
Preference number: 6 (lower is better) Translates to: QTLTRMPLVSAK*ESFFTEARLPS Trigger: AGAAGGAAGCCTTGCCTCTGTAAAGAATGATTCCAACTTGGCAGAAACTAGTGGCATTCGGGTCAATGTTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |
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CDS CAA 90 bp | CATTCTTTACAGAGGCAAGGCTTCCTTCTACATTATGAATACTTATaGTCACTGATGTCAGCTTCATTCGTTTTCTCGGTGTCACACCAA | + |
Preference number: 6 (lower is better) Translates to: HSLQRQGFLLHYEYL*SLMSASFVFSVSHQ Trigger: TTGGTGTGACACCGAGAAAACGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCCTCTGTAAAGAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |
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CDS TCA 72 bp | TCATTCTTTACAGAGGCAAGGCTTCCTTCTACATTATaGATACTTATTGTCACTGATGTCAGCTTCATTCGT | + |
Preference number: 6 (lower is better) Translates to: SFFTEARLPSTL*ILIVTDVSFIR Trigger: ACGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCCTCTGTAAAGAATGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115584.2 |