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Pregenerated sensors for SSXB9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068218

Ensembl transcript IDs: ENSMUST00000115584.2

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp CAAAGCTGGAGCTGTAATGTTGAATTGCCACTCCATCCTTCTTCCACCGTGGCCTCATCATCACTGTCATaGTCTTCAATGCCTTCGACC +
Preference number: 4 (lower is better)
Translates to: QSWSCNVELPLHPSSTVASSSLS*SSMPST
Trigger: GGTCGAAGGCATTGAAGATCATGACAGTGATGATGA...GGCCACGGTGGAAGAAGGATGGAGTGGCAATTCAACATTACAGCTCCAGCTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2
CDS-3UTR CCA 90 bp GCTGGAGCTGTAATGTTGAATTGCCACTCCATCCTTCTTCCACCGTGGCCTTATCATAAAGCACTTCCATaGGGACCTTTTCACAGGAAC +
Preference number: 4 (lower is better)
Translates to: AGAVMLNCHSILLPPWPYHKALP*GPFHRN
Trigger: GTTCCTGTGAAAAGGTCCCCATGGAAGTGCTTTATG...ATAAGGCCACGGTGGAAGAAGGATGGAGTGGCAATTCAACATTACAGCTCCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2
CDS-3UTR GCA 90 bp GCTGGAGCTGTAATGTTGAATTGCCACTCCATCCTTCTTCCACCGTGGCCTTATAATGCCACTAGTTTCTaGCAAGTTGGAATCATTCTT +
Preference number: 4 (lower is better)
Translates to: AGAVMLNCHSILLPPWPYNATSF*QVGIIL
Trigger: AAGAATGATTCCAACTTGGCAGAAACTAGTGGCATT...ATAAGGCCACGGTGGAAGAAGGATGGAGTGGCAATTCAACATTACAGCTCCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2
3UTR CAA 72 bp TATTTAGTCTTTCAAAGCTGGAGCTGTAATGTTGAATaGCCACTCCATCCTTCTTCCACCGTGGCCTTATTT +
Preference number: 4 (lower is better)
Translates to: YLVFQSWSCNVE*PLHPSSTVALF
Trigger: AAATAAGGCCACGGTGGAAGAAGGATGGAGTGGCAATTCAACATTACAGCTCCAGCTTTGAAAGACTAAATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2
CDS-3UTR CCA 90 bp GTCTTTCAAAGCTGGAGCTGTAATGTTGAATTGCCACTCCATCCTTCTTCCACCCTTGCAGATATTCTTTaGTTCATAAAGCACTTCCAT +
Preference number: 4 (lower is better)
Translates to: VFQSWSCNVELPLHPSSTLADIL*FIKHFH
Trigger: ATGGAAGTGCTTTATGAACCAAAGAATATCTGCAAG...GGTGGAAGAAGGATGGAGTGGCAATTCAACATTACAGCTCCAGCTTTGAAAGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2
CDS-3UTR CCA 90 bp AGCTGTAATGTTGAATTGCCACTCCATCCTTCTTCCACCGTGGCCTTATTTCAATATGTAGAAATATCCTaGAAGGCCTTGCAGATATTC +
Preference number: 4 (lower is better)
Translates to: SCNVELPLHPSSTVALFQYVEIS*KALQIF
Trigger: GAATATCTGCAAGGCCTTCCAGGATATTTCTACATA...TTGAAATAAGGCCACGGTGGAAGAAGGATGGAGTGGCAATTCAACATTACAGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2
CDS-3UTR CAA 90 bp TTTCAAAGCTGGAGCTGTAATGTTGAATTGCCACTCCATCCTTCTTCCACCGTGTCGACCAGGGATTGCTaGTCCTGCTCCTTGCCACGC +
Preference number: 5 (lower is better)
Translates to: FQSWSCNVELPLHPSSTVSTRDC*SCSLPR
Trigger: GCGTGGCAAGGAGCAGGACAAGCAATCCCTGGTCGA...CACGGTGGAAGAAGGATGGAGTGGCAATTCAACATTACAGCTCCAGCTTTGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2
CDS-3UTR CAA 90 bp GCTGGAGCTGTAATGTTGAATTGCCACTCCATCCTTCTTCCACCGTGGCCTTATCTAGTTTCTGCCAAGTaGGAATCATTCTTTACAGAG +
Preference number: 5 (lower is better)
Translates to: AGAVMLNCHSILLPPWPYLVSAK*ESFFTE
Trigger: CTCTGTAAAGAATGATTCCAACTTGGCAGAAACTAG...ATAAGGCCACGGTGGAAGAAGGATGGAGTGGCAATTCAACATTACAGCTCCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2
CDS CCA 90 bp AGAGAAGTATGTAGAAATATCCTGGAAGGCCTTGCAGATATTCTTTaGTTCATAAAGCACTTCCATGGGGACCTTTTCACAGGAACTCAC +
Preference number: 5 (lower is better)
Translates to: REVCRNILEGLADIL*FIKHFHGDLFTGTH
Trigger: GTGAGTTCCTGTGAAAAGGTCCCCATGGAAGTGCTTTATGAACCAAAGAATATCTGCAAGGCCTTCCAGGATATTTCTACATACTTCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2
CDS TCA 90 bp TACAGAGGCAAGGCTTCCTTCTACATTATGAATACTTATTGTCACTaGTGTCAGCTTCATTCGTTTTCTCGGTGTCACACCAAAAGATCC +
Preference number: 5 (lower is better)
Translates to: YRGKASFYIMNTYCH*CQLHSFSRCHTKRS
Trigger: GGATCTTTTGGTGTGACACCGAGAAAACGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCCTCTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2
CDS TCA 90 bp AAGTTGGAATCATTCTTTACAGAGGCAAGGCTTCCTTCTACATTATaGATACTTATTGTCACTGATGTCAGCTTCATTCGTTTTCTCGGT +
Preference number: 5 (lower is better)
Translates to: KLESFFTEARLPSTL*ILIVTDVSFIRFLG
Trigger: ACCGAGAAAACGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCCTCTGTAAAGAATGATTCCAACTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2
CDS CAA 72 bp CGATACTTCCTCTCTCGCAGCCGGTGGCTCCAAACATaGACCCGAATGCCACTAGTTTCTGCCAAGTTGGAA +
Preference number: 6 (lower is better)
Translates to: RYFLSRSRWLQT*TRMPLVSAKLE
Trigger: TTCCAACTTGGCAGAAACTAGTGGCATTCGGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2
CDS CAA 72 bp ATCACTGTCATGATCTTCAATGCCTTCGACCAGGGATaGCTTGTCCTGCTCCTTGCCACGCATGAAAACTGG +
Preference number: 6 (lower is better)
Translates to: ITVMIFNAFDQG*LVLLLATHENW
Trigger: CCAGTTTTCATGCGTGGCAAGGAGCAGGACAAGCAATCCCTGGTCGAAGGCATTGAAGATCATGACAGTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2
CDS CAA 90 bp GCATTCATCATCACTGTCATGATCTTCAATGCCTTCGACCAGGGATaGCTTGTCCTGCTCCTTGCCACGCATGAAAACTGGTTGGTTCAC +
Preference number: 6 (lower is better)
Translates to: AFIITVMIFNAFDQG*LVLLLATHENWLVH
Trigger: GTGAACCAACCAGTTTTCATGCGTGGCAAGGAGCAGGACAAGCAATCCCTGGTCGAAGGCATTGAAGATCATGACAGTGATGATGAATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2
CDS CCA 72 bp TCATATATCACTCGATACTTCCTCTCTCGCAGCCGGTaGCTCCAAACATTGACCCGAATGCCACTAGTTTCT +
Preference number: 6 (lower is better)
Translates to: SYITRYFLSRSR*LQTLTRMPLVS
Trigger: AGAAACTAGTGGCATTCGGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGTGATATATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2
CDS CAA 90 bp TATATCACTCGATACTTCCTCTCTCGCAGCCGGTGGCTCCAAACATaGACCCGAATGCCACTAGTTTCTGCCAAGTTGGAATCATTCTTT +
Preference number: 6 (lower is better)
Translates to: YITRYFLSRSRWLQT*TRMPLVSAKLESFF
Trigger: AAAGAATGATTCCAACTTGGCAGAAACTAGTGGCATTCGGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGTGATATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2
CDS CAA 72 bp CAAACATTGACCCGAATGCCACTAGTTTCTGCCAAGTaGGAATCATTCTTTACAGAGGCAAGGCTTCCTTCT +
Preference number: 6 (lower is better)
Translates to: QTLTRMPLVSAK*ESFFTEARLPS
Trigger: AGAAGGAAGCCTTGCCTCTGTAAAGAATGATTCCAACTTGGCAGAAACTAGTGGCATTCGGGTCAATGTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2
CDS CAA 90 bp CATTCTTTACAGAGGCAAGGCTTCCTTCTACATTATGAATACTTATaGTCACTGATGTCAGCTTCATTCGTTTTCTCGGTGTCACACCAA +
Preference number: 6 (lower is better)
Translates to: HSLQRQGFLLHYEYL*SLMSASFVFSVSHQ
Trigger: TTGGTGTGACACCGAGAAAACGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCCTCTGTAAAGAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2
CDS TCA 72 bp TCATTCTTTACAGAGGCAAGGCTTCCTTCTACATTATaGATACTTATTGTCACTGATGTCAGCTTCATTCGT +
Preference number: 6 (lower is better)
Translates to: SFFTEARLPSTL*ILIVTDVSFIR
Trigger: ACGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCCTCTGTAAAGAATGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115584.2