Pregenerated sensors for SSXB8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079703Ensembl transcript IDs: ENSMUST00000101690.4, ENSMUST00000185125.8
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ACTCGATACTTCCTCTCTCGCAGCCGGTGGCTCCAAACATTGACCTaGATGCCACTAGTTTCTGCCAAGTTGGAATTATTCTCTCCAGAT | + |
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Preference number: 5 (lower is better) Translates to: TRYFLSRSRWLQTLT*MPLVSAKLELFSPD Trigger: ATCTGGAGAGAATAATTCCAACTTGGCAGAAACTAGTGGCATTCAGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101690.4 ENSMUST00000185125.8 |
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| CDS TCA 90 bp | GGTGTCACACCAAAAGATCCTTCAAAGCATTCATCTTCACTGTCATaGACTTCAATGCCTTCGACCAGGGATTGCTTGTCCTGCTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: GVTPKDPSKHSSSLS*TSMPSTRDCLSCSL Trigger: CAAGGAGCAGGACAAGCAATCCCTGGTCGAAGGCATTGAAGTTCATGACAGTGAAGATGAATGCTTTGAAGGATCTTTTGGTGTGACACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101690.4 ENSMUST00000185125.8 |
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| CDS CCA 90 bp | AGAGAAGTATGTAGAAATATCCTGGAAGGCCTTGCAGATATTCTTTaGTTCATAAAGCACTTCCATGGGGACCTTTTCACAGAAACTCAC | + |
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Preference number: 5 (lower is better) Translates to: REVCRNILEGLADIL*FIKHFHGDLFTETH Trigger: GTGAGTTTCTGTGAAAAGGTCCCCATGGAAGTGCTTTATGAACCAAAGAATATCTGCAAGGCCTTCCAGGATATTTCTACATACTTCTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000101690.4 ENSMUST00000185125.8 |
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| CDS CCA 90 bp | TCCAGATGCAAGGCTTCCTTCTACATTATGAATACTTATTGTCACTaGTGTCAGCTTCATTTGTTTTATCGGTGTCACACCAAAAGATCC | + |
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Preference number: 5 (lower is better) Translates to: SRCKASFYIMNTYCH*CQLHLFYRCHTKRS Trigger: GGATCTTTTGGTGTGACACCGATAAAACAAATGAAGCTGACACCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCATCTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000101690.4 ENSMUST00000185125.8 |
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| CDS TCA 90 bp | AAGTTGGAATTATTCTCTCCAGATGCAAGGCTTCCTTCTACATTATaGATACTTATTGTCACTGGTGTCAGCTTCATTTGTTTTATCGGT | + |
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Preference number: 5 (lower is better) Translates to: KLELFSPDARLPSTL*ILIVTGVSFICFIG Trigger: ACCGATAAAACAAATGAAGCTGACACCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCATCTGGAGAGAATAATTCCAACTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101690.4 ENSMUST00000185125.8 |
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| CDS CCA 72 bp | TGCTTGTCCTGCTCCTTGCCACTCATGAAAACTGGTTaGTTCACGGTGACCCCTAGGTCAGTCATTCTGATG | + |
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Preference number: 6 (lower is better) Translates to: CLSCSLPLMKTG*FTVTPRSVILM Trigger: CATCAGAATGACTGACCTAGGGGTCACCGTGAACCAACCAGTTTTCATGAGTGGCAAGGAGCAGGACAAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000101690.4 ENSMUST00000185125.8 |
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| CDS CAA 72 bp | TTCACTGTCATGAACTTCAATGCCTTCGACCAGGGATaGCTTGTCCTGCTCCTTGCCACTCATGAAAACTGG | + |
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Preference number: 6 (lower is better) Translates to: FTVMNFNAFDQG*LVLLLATHENW Trigger: CCAGTTTTCATGAGTGGCAAGGAGCAGGACAAGCAATCCCTGGTCGAAGGCATTGAAGTTCATGACAGTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101690.4 ENSMUST00000185125.8 |
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| CDS CAA 90 bp | TATTCTCTCCAGATGCAAGGCTTCCTTCTACATTATGAATACTTATaGTCACTGGTGTCAGCTTCATTTGTTTTATCGGTGTCACACCAA | + |
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Preference number: 6 (lower is better) Translates to: YSLQMQGFLLHYEYL*SLVSASFVLSVSHQ Trigger: TTGGTGTGACACCGATAAAACAAATGAAGCTGACACCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCATCTGGAGAGAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101690.4 ENSMUST00000185125.8 |
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| CDS CCA 72 bp | AAGGCTTCCTTCTACATTATGAATACTTATTGTCACTaGTGTCAGCTTCATTTGTTTTATCGGTGTCACACC | + |
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Preference number: 6 (lower is better) Translates to: KASFYIMNTYCH*CQLHLFYRCHT Trigger: GGTGTGACACCGATAAAACAAATGAAGCTGACACCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101690.4 ENSMUST00000185125.8 |
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| CDS CAA 72 bp | CAGATGCAAGGCTTCCTTCTACATTATGAATACTTATaGTCACTGGTGTCAGCTTCATTTGTTTTATCGGTG | + |
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Preference number: 6 (lower is better) Translates to: QMQGFLLHYEYL*SLVSASFVLSV Trigger: CACCGATAAAACAAATGAAGCTGACACCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCATCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101690.4 ENSMUST00000185125.8 |
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| CDS TCA 72 bp | TTATTCTCTCCAGATGCAAGGCTTCCTTCTACATTATaGATACTTATTGTCACTGGTGTCAGCTTCATTTGT | + |
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Preference number: 6 (lower is better) Translates to: LFSPDARLPSTL*ILIVTGVSFIC Trigger: ACAAATGAAGCTGACACCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCATCTGGAGAGAATAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101690.4 ENSMUST00000185125.8 |
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| CDS GCA 72 bp | ACTAGTTTCTGCCAAGTTGGAATTATTCTCTCCAGATaGAAGGCTTCCTTCTACATTATGAATACTTATTGT | + |
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Preference number: 6 (lower is better) Translates to: TSFCQVGIILSR*KASFYIMNTYC Trigger: ACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCATCTGGAGAGAATAATTCCAACTTGGCAGAAACTAGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101690.4 ENSMUST00000185125.8 |
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