Pregenerated sensors for SSXB6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079702Ensembl transcript IDs: ENSMUST00000138642.3
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ATATCACTCGATACTTCCTCTCTCGCAGCCGGTGGCTCCAAACATTaGCCTGAATGCCACCAGTTTCTGCCAAGTTTGAATCATTCTCTC | + |
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Preference number: 5 (lower is better) Translates to: ISLDTSSLAAGGSKH*PECHQFLPSLNHSL Trigger: GAGAGAATGATTCAAACTTGGCAGAAACTGGTGGCATTCAGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGTGATAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138642.3 |
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| CDS TCA 90 bp | GGTGTCACACCAAAAGATCCTTCAAAGCATTCATCATCACTGTCATaGATTTCAATGCCTTCGACCAGGGATTGCTTGGCCTGCTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: GVTPKDPSKHSSSLS*ISMPSTRDCLACSL Trigger: CAAGGAGCAGGCCAAGCAATCCCTGGTCGAAGGCATTGAAATTCATGACAGTGATGATGAATGCTTTGAAGGATCTTTTGGTGTGACACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138642.3 |
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| CDS TCA 90 bp | TCCAGAGTCATGGCTTCCTTCTACATTATGAATACTTATTGTCACTaGTGTCAGCTTCATTCGTTTTATCGGTGTCACACCAAAAGATCC | + |
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Preference number: 5 (lower is better) Translates to: SRVMASFYIMNTYCH*CQLHSFYRCHTKRS Trigger: GGATCTTTTGGTGTGACACCGATAAAACGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCATGACTCTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138642.3 |
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| CDS CCA 90 bp | AGAGAAGTATGTAGAAATATCCTGGAATGCCTTGCAGATATTCTTTaGTTCATAAAGCACTTCCATGGGGATCTTTTCACAGGAACTCAC | + |
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Preference number: 5 (lower is better) Translates to: REVCRNILECLADIL*FIKHFHGDLFTGTH Trigger: GTGAGTTCCTGTGAAAAGATCCCCATGGAAGTGCTTTATGAACCAAAGAATATCTGCAAGGCATTCCAGGATATTTCTACATACTTCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138642.3 |
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| CDS CAA 72 bp | TCAATGCCTTCGACCAGGGATTGCTTGGCCTGCTCCTaGCCACGCATGAAAACTGGTTGGTTCACAGTGACA | + |
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Preference number: 6 (lower is better) Translates to: SMPSTRDCLACS*PRMKTGWFTVT Trigger: TGTCACTGTGAACCAACCAGTTTTCATGCGTGGCAAGGAGCAGGCCAAGCAATCCCTGGTCGAAGGCATTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138642.3 |
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| CDS TCA 72 bp | TTCCTCTCTCGCAGCCGGTGGCTCCAAACATTGACCTaGATGCCACCAGTTTCTGCCAAGTTTGAATCATTC | + |
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Preference number: 6 (lower is better) Translates to: FLSRSRWLQTLT*MPPVSAKFESF Trigger: GAATGATTCAAACTTGGCAGAAACTGGTGGCATTCAGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138642.3 |
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| CDS CAA 72 bp | ATCACTGTCATGAATTTCAATGCCTTCGACCAGGGATaGCTTGGCCTGCTCCTTGCCACGCATGAAAACTGG | + |
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Preference number: 6 (lower is better) Translates to: ITVMNFNAFDQG*LGLLLATHENW Trigger: CCAGTTTTCATGCGTGGCAAGGAGCAGGCCAAGCAATCCCTGGTCGAAGGCATTGAAATTCATGACAGTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138642.3 |
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| CDS CAA 90 bp | GCATTCATCATCACTGTCATGAATTTCAATGCCTTCGACCAGGGATaGCTTGGCCTGCTCCTTGCCACGCATGAAAACTGGTTGGTTCAC | + |
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Preference number: 6 (lower is better) Translates to: AFIITVMNFNAFDQG*LGLLLATHENWLVH Trigger: GTGAACCAACCAGTTTTCATGCGTGGCAAGGAGCAGGCCAAGCAATCCCTGGTCGAAGGCATTGAAATTCATGACAGTGATGATGAATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138642.3 |
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| CDS TCA 72 bp | AACATTGACCTGAATGCCACCAGTTTCTGCCAAGTTTaGATCATTCTCTCCAGAGTCATGGCTTCCTTCTAC | + |
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Preference number: 6 (lower is better) Translates to: NIDLNATSFCQV*IILSRVMASFY Trigger: GTAGAAGGAAGCCATGACTCTGGAGAGAATGATTCAAACTTGGCAGAAACTGGTGGCATTCAGGTCAATGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138642.3 |
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| CDS TCA 72 bp | ATGGCTTCCTTCTACATTATGAATACTTATTGTCACTaGTGTCAGCTTCATTCGTTTTATCGGTGTCACACC | + |
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Preference number: 6 (lower is better) Translates to: MASFYIMNTYCH*CQLHSFYRCHT Trigger: GGTGTGACACCGATAAAACGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138642.3 |
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| CDS CAA 72 bp | CAGAGTCATGGCTTCCTTCTACATTATGAATACTTATaGTCACTGATGTCAGCTTCATTCGTTTTATCGGTG | + |
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Preference number: 6 (lower is better) Translates to: QSHGFLLHYEYL*SLMSASFVLSV Trigger: CACCGATAAAACGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCATGACTCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138642.3 |
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