Pregenerated sensors for SSXB5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071816

Ensembl transcript IDs: ENSMUST00000089370.6

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ACTCGATACTTCCTCTCTCGCAGCCGGTGGCTCCAAACATTGACCTaGATGCCATCAGTTTCTGCCAAGTTGGAATCATTCTCTCCAGAG	+
Preference number: 5 (lower is better) Translates to: TRYFLSRSRWLQTLT*MPSVSAKLESFSPE Trigger: CTCTGGAGAGAATGATTCCAACTTGGCAGAAACTGATGGCATTCAGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089370.6
CDS TCA 90 bp	ATATCACTCGATACTTCCTCTCTCGCAGCCGGTGGCTCCAAACATTaGCCTGAATGCCATCAGTTTCTGCCAAGTTGGAATCATTCTCTC	+
Preference number: 5 (lower is better) Translates to: ISLDTSSLAAGGSKH*PECHQFLPSWNHSL Trigger: GAGAGAATGATTCCAACTTGGCAGAAACTGATGGCATTCAGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGTGATAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089370.6
CDS TCA 90 bp	TCCAGAGGCAAGGCTTCCTTCTACATTATGAATACTTATTGTCACTaGTGTCAGCTTCATTCGTTTTCTCGGTGTCACACCAAAAGATTC	+
Preference number: 5 (lower is better) Translates to: SRGKASFYIMNTYCH*CQLHSFSRCHTKRF Trigger: GAATCTTTTGGTGTGACACCGAGAAAACGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCCTCTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089370.6
CDS TCA 72 bp	GATACTTCCTCTCTCGCAGCCGGTGGCTCCAAACATTaGCCTGAATGCCATCAGTTTCTGCCAAGTTGGAAT	+
Preference number: 6 (lower is better) Translates to: DTSSLAAGGSKH*PECHQFLPSWN Trigger: ATTCCAACTTGGCAGAAACTGATGGCATTCAGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089370.6
CDS GCA 72 bp	CTTCAAAGCATTCATCTTCACTGTCATGATCTTCAATaGCTTCAACCAGGAATTGCTTGGCCTGCTCCTTGC	+
Preference number: 6 (lower is better) Translates to: LQSIHLHCHDLQ*LQPGIAWPAPC Trigger: GCAAGGAGCAGGCCAAGCAATTCCTGGTTGAAGGCATTGAAGATCATGACAGTGAAGATGAATGCTTTGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089370.6
CDS TCA 72 bp	CCAAAAGATTCTTCAAAGCATTCATCTTCACTGTCATaGTCTTCAATGCCTTCAACCAGGAATTGCTTGGCC	+
Preference number: 6 (lower is better) Translates to: PKDSSKHSSSLS*SSMPSTRNCLA Trigger: GGCCAAGCAATTCCTGGTTGAAGGCATTGAAGATCATGACAGTGAAGATGAATGCTTTGAAGAATCTTTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089370.6
CDS TCA 72 bp	AAGGCTTCCTTCTACATTATGAATACTTATTGTCACTaGTGTCAGCTTCATTCGTTTTCTCGGTGTCACACC	+
Preference number: 6 (lower is better) Translates to: KASFYIMNTYCH*CQLHSFSRCHT Trigger: GGTGTGACACCGAGAAAACGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089370.6
CDS TCA 72 bp	TCATTCTCTCCAGAGGCAAGGCTTCCTTCTACATTATaGATACTTATTGTCACTGATGTCAGCTTCATTCGT	+
Preference number: 6 (lower is better) Translates to: SFSPEARLPSTL*ILIVTDVSFIR Trigger: ACGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCCTCTGGAGAGAATGA 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089370.6

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