Pregenerated sensors for SSXB3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079701Ensembl transcript IDs: ENSMUST00000089374.11, ENSMUST00000089379.5
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS-3UTR GCA 90 bp | TTTCAAAGGTGGAGCTGTGATGTTGAATCGCCACTCCATCCTTCTTCCACCGTGCCTTCAACCAGGGATTaGTTTTCCTGCTCCTTGCCA | + |
Preference number: 4 (lower is better) Translates to: FQRWSCDVESPLHPSSTVPSTRD*FSCSLP Trigger: TGGCAAGGAGCAGGAAAAGCAATCCCTGGTTGAAGG...CACGGTGGAAGAAGGATGGAGTGGCGATTCAACATCACAGCTCCACCTTTGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089374.11 |
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CDS-3UTR CCA 90 bp | GTCTTTCAAAGGTGGAGCTGTGATGTTGAATCGCCACTCCATCCTTCTTCCACCCAGTTTCTGCCAAGTTaGAATCATTCTTTCCAGAGG | + |
Preference number: 4 (lower is better) Translates to: VFQRWSCDVESPLHPSSTQFLPS*NHSFQR Trigger: CCTCTGGAAAGAATGATTCCAACTTGGCAGAAACTG...GGTGGAAGAAGGATGGAGTGGCGATTCAACATCACAGCTCCACCTTTGAAAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089374.11 |
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CDS-3UTR TCA 90 bp | ATGTTGAATCGCCACTCCATCCTTCTTCCACCGTGGCCTTATTTCAACTGTCAGTCATCATCACTGTCATaGACTTCAATGCCTTCAACC | + |
Preference number: 4 (lower is better) Translates to: MLNRHSILLPPWPYFNCQSSSLS*TSMPST Trigger: GGTTGAAGGCATTGAAGTTCATGACAGTGATGATGA...CTGACAGTTGAAATAAGGCCACGGTGGAAGAAGGATGGAGTGGCGATTCAACAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089374.11 |
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CDS-3UTR CAA 90 bp | GGTGGAGCTGTGATGTTGAATCGCCACTCCATCCTTCTTCCACCGTGGCCTTATGCCTTCAACCAGGGATaGCTTTTCCTGCTCCTTGCC | + |
Preference number: 5 (lower is better) Translates to: GGAVMLNRHSILLPPWPYAFNQG*LFLLLA Trigger: GGCAAGGAGCAGGAAAAGCAATCCCTGGTTGAAGGC...ATAAGGCCACGGTGGAAGAAGGATGGAGTGGCGATTCAACATCACAGCTCCACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089374.11 |
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CDS TCA 90 bp | ACTCGATACTTCCTCTCTCGCAGCCGGTGGCTCCAAACATTGACCTaGATGCCATCAGTTTCTGCCAAGTTGGAATCATTCTTTCCAGAG | + |
Preference number: 5 (lower is better) Translates to: TRYFLSRSRWLQTLT*MPSVSAKLESFFPE Trigger: CTCTGGAAAGAATGATTCCAACTTGGCAGAAACTGATGGCATTCAGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089374.11 ENSMUST00000089379.5 |
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CDS TCA 90 bp | ATATCACTCGATACTTCCTCTCTCGCAGCCGGTGGCTCCAAACATTaGCCTGAATGCCATCAGTTTCTGCCAAGTTGGAATCATTCTTTC | + |
Preference number: 5 (lower is better) Translates to: ISLDTSSLAAGGSKH*PECHQFLPSWNHSF Trigger: GAAAGAATGATTCCAACTTGGCAGAAACTGATGGCATTCAGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGTGATAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089374.11 ENSMUST00000089379.5 |
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CDS-3UTR CAA 90 bp | GCTGTGATGTTGAATCGCCACTCCATCCTTCTTCCACCGTGGCCTTATTTCAACTCAGTTTCTGCCAAGTaGGAATCATTCTTTCCAGAG | + |
Preference number: 5 (lower is better) Translates to: AVMLNRHSILLPPWPYFNSVSAK*ESFFPE Trigger: CTCTGGAAAGAATGATTCCAACTTGGCAGAAACTGA...GTTGAAATAAGGCCACGGTGGAAGAAGGATGGAGTGGCGATTCAACATCACAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089374.11 |
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CDS CAA 72 bp | TCAATGCCTTCAACCAGGGATTGCTTTTCCTGCTCCTaGCCACGCATGAAAACTGGTTGGTTCACGGTGACC | + |
Preference number: 6 (lower is better) Translates to: SMPSTRDCFSCS*PRMKTGWFTVT Trigger: GGTCACCGTGAACCAACCAGTTTTCATGCGTGGCAAGGAGCAGGAAAAGCAATCCCTGGTTGAAGGCATTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089374.11 ENSMUST00000089379.5 |
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CDS CAA 90 bp | GCATTCATCATCACTGTCATGAACTTCAATGCCTTCAACCAGGGATaGCTTTTCCTGCTCCTTGCCACGCATGAAAACTGGTTGGTTCAC | + |
Preference number: 6 (lower is better) Translates to: AFIITVMNFNAFNQG*LFLLLATHENWLVH Trigger: GTGAACCAACCAGTTTTCATGCGTGGCAAGGAGCAGGAAAAGCAATCCCTGGTTGAAGGCATTGAAGTTCATGACAGTGATGATGAATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089374.11 ENSMUST00000089379.5 |
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CDS GCA 72 bp | GTGGCTCCAAACATTGACCTGAATGCCATCAGTTTCTaGCAAGTTGGAATCATTCTTTCCAGAGGCAAGGCT | + |
Preference number: 6 (lower is better) Translates to: VAPNIDLNAISF*QVGIILSRGKA Trigger: AGCCTTGCCTCTGGAAAGAATGATTCCAACTTGGCAGAAACTGATGGCATTCAGGTCAATGTTTGGAGCCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089374.11 ENSMUST00000089379.5 |
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CDS GCA 72 bp | CTTCAAAGCATTCATCATCACTGTCATGAACTTCAATaGCTTCAACCAGGGATTGCTTTTCCTGCTCCTTGC | + |
Preference number: 6 (lower is better) Translates to: LQSIHHHCHELQ*LQPGIAFPAPC Trigger: GCAAGGAGCAGGAAAAGCAATCCCTGGTTGAAGGCATTGAAGTTCATGACAGTGATGATGAATGCTTTGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089374.11 ENSMUST00000089379.5 |
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CDS TCA 72 bp | TCATTCTTTCCAGAGGCAAGGCTTCCTTCTACATTATaGATACTTATTGTCACTGACGTCAGCTTCATTCGT | + |
Preference number: 6 (lower is better) Translates to: SFFPEARLPSTL*ILIVTDVSFIR Trigger: ACGAATGAAGCTGACGTCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCCTCTGGAAAGAATGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089374.11 ENSMUST00000089379.5 |