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Pregenerated sensors for SSXB3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079701

Ensembl transcript IDs: ENSMUST00000089374.11, ENSMUST00000089379.5

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp TTTCAAAGGTGGAGCTGTGATGTTGAATCGCCACTCCATCCTTCTTCCACCGTGCCTTCAACCAGGGATTaGTTTTCCTGCTCCTTGCCA +
Preference number: 4 (lower is better)
Translates to: FQRWSCDVESPLHPSSTVPSTRD*FSCSLP
Trigger: TGGCAAGGAGCAGGAAAAGCAATCCCTGGTTGAAGG...CACGGTGGAAGAAGGATGGAGTGGCGATTCAACATCACAGCTCCACCTTTGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089374.11
CDS-3UTR CCA 90 bp GTCTTTCAAAGGTGGAGCTGTGATGTTGAATCGCCACTCCATCCTTCTTCCACCCAGTTTCTGCCAAGTTaGAATCATTCTTTCCAGAGG +
Preference number: 4 (lower is better)
Translates to: VFQRWSCDVESPLHPSSTQFLPS*NHSFQR
Trigger: CCTCTGGAAAGAATGATTCCAACTTGGCAGAAACTG...GGTGGAAGAAGGATGGAGTGGCGATTCAACATCACAGCTCCACCTTTGAAAGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089374.11
CDS-3UTR TCA 90 bp ATGTTGAATCGCCACTCCATCCTTCTTCCACCGTGGCCTTATTTCAACTGTCAGTCATCATCACTGTCATaGACTTCAATGCCTTCAACC +
Preference number: 4 (lower is better)
Translates to: MLNRHSILLPPWPYFNCQSSSLS*TSMPST
Trigger: GGTTGAAGGCATTGAAGTTCATGACAGTGATGATGA...CTGACAGTTGAAATAAGGCCACGGTGGAAGAAGGATGGAGTGGCGATTCAACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089374.11
CDS-3UTR CAA 90 bp GGTGGAGCTGTGATGTTGAATCGCCACTCCATCCTTCTTCCACCGTGGCCTTATGCCTTCAACCAGGGATaGCTTTTCCTGCTCCTTGCC +
Preference number: 5 (lower is better)
Translates to: GGAVMLNRHSILLPPWPYAFNQG*LFLLLA
Trigger: GGCAAGGAGCAGGAAAAGCAATCCCTGGTTGAAGGC...ATAAGGCCACGGTGGAAGAAGGATGGAGTGGCGATTCAACATCACAGCTCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089374.11
CDS TCA 90 bp ACTCGATACTTCCTCTCTCGCAGCCGGTGGCTCCAAACATTGACCTaGATGCCATCAGTTTCTGCCAAGTTGGAATCATTCTTTCCAGAG +
Preference number: 5 (lower is better)
Translates to: TRYFLSRSRWLQTLT*MPSVSAKLESFFPE
Trigger: CTCTGGAAAGAATGATTCCAACTTGGCAGAAACTGATGGCATTCAGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089374.11
ENSMUST00000089379.5
CDS TCA 90 bp ATATCACTCGATACTTCCTCTCTCGCAGCCGGTGGCTCCAAACATTaGCCTGAATGCCATCAGTTTCTGCCAAGTTGGAATCATTCTTTC +
Preference number: 5 (lower is better)
Translates to: ISLDTSSLAAGGSKH*PECHQFLPSWNHSF
Trigger: GAAAGAATGATTCCAACTTGGCAGAAACTGATGGCATTCAGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGTGATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089374.11
ENSMUST00000089379.5
CDS-3UTR CAA 90 bp GCTGTGATGTTGAATCGCCACTCCATCCTTCTTCCACCGTGGCCTTATTTCAACTCAGTTTCTGCCAAGTaGGAATCATTCTTTCCAGAG +
Preference number: 5 (lower is better)
Translates to: AVMLNRHSILLPPWPYFNSVSAK*ESFFPE
Trigger: CTCTGGAAAGAATGATTCCAACTTGGCAGAAACTGA...GTTGAAATAAGGCCACGGTGGAAGAAGGATGGAGTGGCGATTCAACATCACAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089374.11
CDS CAA 72 bp TCAATGCCTTCAACCAGGGATTGCTTTTCCTGCTCCTaGCCACGCATGAAAACTGGTTGGTTCACGGTGACC +
Preference number: 6 (lower is better)
Translates to: SMPSTRDCFSCS*PRMKTGWFTVT
Trigger: GGTCACCGTGAACCAACCAGTTTTCATGCGTGGCAAGGAGCAGGAAAAGCAATCCCTGGTTGAAGGCATTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089374.11
ENSMUST00000089379.5
CDS CAA 90 bp GCATTCATCATCACTGTCATGAACTTCAATGCCTTCAACCAGGGATaGCTTTTCCTGCTCCTTGCCACGCATGAAAACTGGTTGGTTCAC +
Preference number: 6 (lower is better)
Translates to: AFIITVMNFNAFNQG*LFLLLATHENWLVH
Trigger: GTGAACCAACCAGTTTTCATGCGTGGCAAGGAGCAGGAAAAGCAATCCCTGGTTGAAGGCATTGAAGTTCATGACAGTGATGATGAATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089374.11
ENSMUST00000089379.5
CDS GCA 72 bp GTGGCTCCAAACATTGACCTGAATGCCATCAGTTTCTaGCAAGTTGGAATCATTCTTTCCAGAGGCAAGGCT +
Preference number: 6 (lower is better)
Translates to: VAPNIDLNAISF*QVGIILSRGKA
Trigger: AGCCTTGCCTCTGGAAAGAATGATTCCAACTTGGCAGAAACTGATGGCATTCAGGTCAATGTTTGGAGCCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089374.11
ENSMUST00000089379.5
CDS GCA 72 bp CTTCAAAGCATTCATCATCACTGTCATGAACTTCAATaGCTTCAACCAGGGATTGCTTTTCCTGCTCCTTGC +
Preference number: 6 (lower is better)
Translates to: LQSIHHHCHELQ*LQPGIAFPAPC
Trigger: GCAAGGAGCAGGAAAAGCAATCCCTGGTTGAAGGCATTGAAGTTCATGACAGTGATGATGAATGCTTTGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089374.11
ENSMUST00000089379.5
CDS TCA 72 bp TCATTCTTTCCAGAGGCAAGGCTTCCTTCTACATTATaGATACTTATTGTCACTGACGTCAGCTTCATTCGT +
Preference number: 6 (lower is better)
Translates to: SFFPEARLPSTL*ILIVTDVSFIR
Trigger: ACGAATGAAGCTGACGTCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCCTCTGGAAAGAATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089374.11
ENSMUST00000089379.5