Pregenerated sensors for SSXB2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023165Ensembl transcript IDs: ENSMUST00000023931.4, ENSMUST00000103000.9
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ATGTTGAATCGCCACTCCATCCTTCTTCCACCGTGGGCTTATTTCGACTGTTGGGTTTCATCACTGTCATaGACTTCAATGCCTTCAACC | + |
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Preference number: 4 (lower is better) Translates to: MLNRHSILLPPWAYFDCWVSSLS*TSMPST Trigger: GGTTGAAGGCATTGAAGTTCATGACAGTGATGAAAC...CCAACAGTCGAAATAAGCCCACGGTGGAAGAAGGATGGAGTGGCGATTCAACAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023931.4 ENSMUST00000103000.9 |
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| CDS-3UTR TCA 90 bp | TTTCAAAGCTGTAGCTGTGATGTTGAATCGCCACTCCATCCTTCTTCCACCGTGGTTTCATCACTGTCATaGACTTCAATGCCTTCAACC | + |
|
Preference number: 4 (lower is better) Translates to: FQSCSCDVESPLHPSSTVVSSLS*TSMPST Trigger: GGTTGAAGGCATTGAAGTTCATGACAGTGATGAAAC...CACGGTGGAAGAAGGATGGAGTGGCGATTCAACATCACAGCTACAGCTTTGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023931.4 ENSMUST00000103000.9 |
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| CDS-3UTR GCA 90 bp | ATGTTGAATCGCCACTCCATCCTTCTTCCACCGTGGGCTTATTTCGACTGTTGGTATCCTGGAAGGCCTTaGAGATATTCTTTGGTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: MLNRHSILLPPWAYFDCWYPGRP*RYSLVH Trigger: ATGAACCAAAGAATATCTGCAAGGCCTTCCAGGATA...CCAACAGTCGAAATAAGCCCACGGTGGAAGAAGGATGGAGTGGCGATTCAACAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023931.4 ENSMUST00000103000.9 |
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| CDS-3UTR GCA 90 bp | TTTCAAAGCTGTAGCTGTGATGTTGAATCGCCACTCCATCCTTCTTCCACCGTGTATCCTGGAAGGCCTTaGAGATATTCTTTGGTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: FQSCSCDVESPLHPSSTVYPGRP*RYSLVH Trigger: ATGAACCAAAGAATATCTGCAAGGCCTTCCAGGATA...CACGGTGGAAGAAGGATGGAGTGGCGATTCAACATCACAGCTACAGCTTTGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023931.4 ENSMUST00000103000.9 |
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| CDS-3UTR CAA 90 bp | AGCTGTAGCTGTGATGTTGAATCGCCACTCCATCCTTCTTCCACCGTGGGCTTATCAACCAGGGATTGCTaGTCCTGCTCCTTACCACGC | + |
|
Preference number: 5 (lower is better) Translates to: SCSCDVESPLHPSSTVGLSTRDC*SCSLPR Trigger: GCGTGGTAAGGAGCAGGACAAGCAATCCCTGGTTGA...TAAGCCCACGGTGGAAGAAGGATGGAGTGGCGATTCAACATCACAGCTACAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023931.4 ENSMUST00000103000.9 |
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| CDS-3UTR CAA 90 bp | GTCTTTCAAAGCTGTAGCTGTGATGTTGAATCGCCACTCCATCCTTCTTCCACCGCCTTCAACCAGGGATaGCTTGTCCTGCTCCTTACC | + |
|
Preference number: 5 (lower is better) Translates to: VFQSCSCDVESPLHPSSTAFNQG*LVLLLT Trigger: GGTAAGGAGCAGGACAAGCAATCCCTGGTTGAAGGC...GGTGGAAGAAGGATGGAGTGGCGATTCAACATCACAGCTACAGCTTTGAAAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023931.4 ENSMUST00000103000.9 |
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| CDS-3UTR CAA 90 bp | TTTCAAAGCTGTAGCTGTGATGTTGAATCGCCACTCCATCCTTCTTCCACCGTGGCCTTCAACCAGGGATaGCTTGTCCTGCTCCTTACC | + |
|
Preference number: 5 (lower is better) Translates to: FQSCSCDVESPLHPSSTVAFNQG*LVLLLT Trigger: GGTAAGGAGCAGGACAAGCAATCCCTGGTTGAAGGC...CACGGTGGAAGAAGGATGGAGTGGCGATTCAACATCACAGCTACAGCTTTGAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023931.4 ENSMUST00000103000.9 |
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| CDS TCA 90 bp | TGGCTCCAAACATTGACCCGAATGCCACTAGTTTCATCACTGTCATaGACTTCAATGCCTTCAACCAGGGATTGCTTGTCCTGCTCCTTA | + |
|
Preference number: 5 (lower is better) Translates to: WLQTLTRMPLVSSLS*TSMPSTRDCLSCSL Trigger: TAAGGAGCAGGACAAGCAATCCCTGGTTGAAGGCATTGAAGTTCATGACAGTGATGAAACTAGTGGCATTCGGGTCAATGTTTGGAGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023931.4 ENSMUST00000103000.9 |
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| CDS-3UTR CAA 90 bp | AGCTGTAGCTGTGATGTTGAATCGCCACTCCATCCTTCTTCCACCGTGGGCTTACATGTCAGGGTGATTTaGAAAAGACACAATCTTGTC | + |
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Preference number: 5 (lower is better) Translates to: SCSCDVESPLHPSSTVGLHVRVI*KRHNLV Trigger: GACAAGATTGTGTCTTTTCAAAATCACCCTGACATG...TAAGCCCACGGTGGAAGAAGGATGGAGTGGCGATTCAACATCACAGCTACAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023931.4 |
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| CDS CCA 90 bp | CCTGGAAGGCCTTGCAGATATTCTTTGGTTCATAAAGCACTTCCATaGGGTTCTTTTCACAGGAACTCACTGTTTCCATGTCAGGGTGAT | + |
|
Preference number: 5 (lower is better) Translates to: PGRPCRYSLVHKALP*GSFHRNSLFPCQGD Trigger: ATCACCCTGACATGGAAACAGTGAGTTCCTGTGAAAAGAACCCCATGGAAGTGCTTTATGAACCAAAGAATATCTGCAAGGCCTTCCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023931.4 |
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| CDS CCA 90 bp | AGAGAAGTATGTAGAAATATCCTGGAAGGCCTTGCAGATATTCTTTaGTTCATAAAGCACTTCCATGGGGTTCTTTTCACAGGAACTCAC | + |
|
Preference number: 5 (lower is better) Translates to: REVCRNILEGLADIL*FIKHFHGVLFTGTH Trigger: GTGAGTTCCTGTGAAAAGAACCCCATGGAAGTGCTTTATGAACCAAAGAATATCTGCAAGGCCTTCCAGGATATTTCTACATACTTCTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023931.4 ENSMUST00000103000.9 |
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| CDS CCA 72 bp | TCATATATCACTCGATACTTCCTCTCTCGCAGCCGGTaGCTCCAAACATTGACCCGAATGCCACTAGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: SYITRYFLSRSR*LQTLTRMPLVS Trigger: TGAAACTAGTGGCATTCGGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGTGATATATGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023931.4 ENSMUST00000103000.9 |
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| CDS TCA 72 bp | ACATTGACCCGAATGCCACTAGTTTCATCACTGTCATaGACTTCAATGCCTTCAACCAGGGATTGCTTGTCC | + |
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Preference number: 6 (lower is better) Translates to: TLTRMPLVSSLS*TSMPSTRDCLS Trigger: GGACAAGCAATCCCTGGTTGAAGGCATTGAAGTTCATGACAGTGATGAAACTAGTGGCATTCGGGTCAATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023931.4 ENSMUST00000103000.9 |
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| CDS CCA 72 bp | TGTAGAAATATCCTGGAAGGCCTTGCAGATATTCTTTaGTTCATAAAGCACTTCCATGGGGTTCTTTTCACA | + |
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Preference number: 6 (lower is better) Translates to: CRNILEGLADIL*FIKHFHGVLFT Trigger: TGTGAAAAGAACCCCATGGAAGTGCTTTATGAACCAAAGAATATCTGCAAGGCCTTCCAGGATATTTCTACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023931.4 ENSMUST00000103000.9 |
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