Pregenerated sensors for SSXB10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068219

Ensembl transcript IDs: ENSMUST00000103003.4

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ACTCGATACTTCCTCTCTCGCAGCCGGTGGCTCCAAACATTGACCTaGATGCCACCAGGTTCTGCCAAGTTGGAATCATTCTCTCCAGAG	+
Preference number: 5 (lower is better) Translates to: TRYFLSRSRWLQTLT*MPPGSAKLESFSPE Trigger: CTCTGGAGAGAATGATTCCAACTTGGCAGAACCTGGTGGCATTCAGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103003.4
CDS TCA 90 bp	ATATCACTCGATACTTCCTCTCTCGCAGCCGGTGGCTCCAAACATTaGCCTGAATGCCACCAGGTTCTGCCAAGTTGGAATCATTCTCTC	+
Preference number: 5 (lower is better) Translates to: ISLDTSSLAAGGSKH*PECHQVLPSWNHSL Trigger: GAGAGAATGATTCCAACTTGGCAGAACCTGGTGGCATTCAGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGTGATAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103003.4
CDS TCA 90 bp	GGTGTCACACCAAAAGATCCTTCAAAGCATTCATCTTCACTGTCATaGTCTTCAATGCCTTCAACCAGGGATTGCTTGTCCTGCTCCTTG	+
Preference number: 5 (lower is better) Translates to: GVTPKDPSKHSSSLS*SSMPSTRDCLSCSL Trigger: CAAGGAGCAGGACAAGCAATCCCTGGTTGAAGGCATTGAAGATCATGACAGTGAAGATGAATGCTTTGAAGGATCTTTTGGTGTGACACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103003.4
CDS TCA 90 bp	TCCAGAGGCAAGGCTTCCTTCTACATTATGAATACTTATTGTCACTaGTGTCAGCTTCATTCTTTTTCTCGGTGTCACACCAAAAGATCC	+
Preference number: 5 (lower is better) Translates to: SRGKASFYIMNTYCH*CQLHSFSRCHTKRS Trigger: GGATCTTTTGGTGTGACACCGAGAAAAAGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCCTCTGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103003.4
CDS TCA 72 bp	TTCCTCTCTCGCAGCCGGTGGCTCCAAACATTGACCTaGATGCCACCAGGTTCTGCCAAGTTGGAATCATTC	+
Preference number: 6 (lower is better) Translates to: FLSRSRWLQTLT*MPPGSAKLESF Trigger: GAATGATTCCAACTTGGCAGAACCTGGTGGCATTCAGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103003.4
CDS CAA 72 bp	TTCACTGTCATGATCTTCAATGCCTTCAACCAGGGATaGCTTGTCCTGCTCCTTGCCGCGCATGAAAACTGG	+
Preference number: 6 (lower is better) Translates to: FTVMIFNAFNQG*LVLLLAAHENW Trigger: CCAGTTTTCATGCGCGGCAAGGAGCAGGACAAGCAATCCCTGGTTGAAGGCATTGAAGATCATGACAGTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103003.4
CDS GCA 72 bp	CTTCAAAGCATTCATCTTCACTGTCATGATCTTCAATaGCTTCAACCAGGGATTGCTTGTCCTGCTCCTTGC	+
Preference number: 6 (lower is better) Translates to: LQSIHLHCHDLQ*LQPGIACPAPC Trigger: GCAAGGAGCAGGACAAGCAATCCCTGGTTGAAGGCATTGAAGATCATGACAGTGAAGATGAATGCTTTGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103003.4
CDS TCA 72 bp	AAGGCTTCCTTCTACATTATGAATACTTATTGTCACTaGTGTCAGCTTCATTCTTTTTCTCGGTGTCACACC	+
Preference number: 6 (lower is better) Translates to: KASFYIMNTYCH*CQLHSFSRCHT Trigger: GGTGTGACACCGAGAAAAAGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103003.4
CDS TCA 72 bp	TCATTCTCTCCAGAGGCAAGGCTTCCTTCTACATTATaGATACTTATTGTCACTGATGTCAGCTTCATTCTT	+
Preference number: 6 (lower is better) Translates to: SFSPEARLPSTL*ILIVTDVSFIL Trigger: AAGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCCTCTGGAGAGAATGA 39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103003.4

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