RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SSXB1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079705

Ensembl transcript IDs: ENSMUST00000037297.4

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp AGCTGTAGCTGTGATGTTGAGTCGCCACTCCATCCTTCTTCCACTGTGGGCTCATCATCTTCACTGTCATaGACTTCAATGCCTTCGACC +
Preference number: 4 (lower is better)
Translates to: SCSCDVESPLHPSSTVGSSSSLS*TSMPST
Trigger: GGTCGAAGGCATTGAAGTTCATGACAGTGAAGATGA...TGAGCCCACAGTGGAAGAAGGATGGAGTGGCGACTCAACATCACAGCTACAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS-3UTR GCA 90 bp GCTGTAGCTGTGATGTTGAGTCGCCACTCCATCCTTCTTCCACTGTGGGCTCATAGAAATATCCTGGAATaGCTTGCAGATATTCTTTGG +
Preference number: 4 (lower is better)
Translates to: AVAVMLSRHSILLPLWAHRNILE*LADILW
Trigger: CCAAAGAATATCTGCAAGGCATTCCAGGATATTTCT...ATGAGCCCACAGTGGAAGAAGGATGGAGTGGCGACTCAACATCACAGCTACAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS-3UTR GCA 90 bp GTCTTTCAAAGCTGTAGCTGTGATGTTGAGTCGCCACTCCATCCTTCTTCCACTATCATTCTCTCCAGATaGAAGGCTTCCTTCTACATT +
Preference number: 4 (lower is better)
Translates to: VFQSCSCDVESPLHPSSTIILSR*KASFYI
Trigger: AATGTAGAAGGAAGCCTTGCATCTGGAGAGAATGAT...AGTGGAAGAAGGATGGAGTGGCGACTCAACATCACAGCTACAGCTTTGAAAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS-3UTR CCA 90 bp GCTGTGATGTTGAGTCGCCACTCCATCCTTCTTCCACTGTGGGCTCATTTAGACTATGTAGAAATATCCTaGAATGCCTTGCAGATATTC +
Preference number: 4 (lower is better)
Translates to: AVMLSRHSILLPLWAHLDYVEIS*NALQIF
Trigger: GAATATCTGCAAGGCATTCCAGGATATTTCTACATA...GTCTAAATGAGCCCACAGTGGAAGAAGGATGGAGTGGCGACTCAACATCACAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS-3UTR CAA 90 bp CAAAGCTGTAGCTGTGATGTTGAGTCGCCACTCCATCCTTCTTCCACTGTGGGCGCCTTCGACCAGGGATaGCTTGGCCTGCTCCTTGCC +
Preference number: 5 (lower is better)
Translates to: QSCSCDVESPLHPSSTVGAFDQG*LGLLLA
Trigger: GGCAAGGAGCAGGCCAAGCAATCCCTGGTCGAAGGC...GCCCACAGTGGAAGAAGGATGGAGTGGCGACTCAACATCACAGCTACAGCTTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS-3UTR CAA 90 bp CAAAGCTGTAGCTGTGATGTTGAGTCGCCACTCCATCCTTCTTCCACTGTGGGCTGCTTGGCCTGCTCCTaGCCGCGCATGAAAACTGGT +
Preference number: 5 (lower is better)
Translates to: QSCSCDVESPLHPSSTVGCLACS*PRMKTG
Trigger: ACCAGTTTTCATGCGCGGCAAGGAGCAGGCCAAGCA...GCCCACAGTGGAAGAAGGATGGAGTGGCGACTCAACATCACAGCTACAGCTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS GCA 90 bp TCGCAGCCGGTGGCTCCAAACATTGACCTGAATGCCACCAGTTTCTaGCAAGTTGCAATCATTCTCTCCAGATGCAAGGCTTCCTTCTAC +
Preference number: 5 (lower is better)
Translates to: SQPVAPNIDLNATSF*QVAIILSRCKASFY
Trigger: GTAGAAGGAAGCCTTGCATCTGGAGAGAATGATTGCAACTTGGCAGAAACTGGTGGCATTCAGGTCAATGTTTGGAGCCACCGGCTGCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS TCA 90 bp ACTCGATACTTCCTCTCTCGCAGCCGGTGGCTCCAAACATTGACCTaGATGCCACCAGTTTCTGCCAAGTTGCAATCATTCTCTCCAGAT +
Preference number: 5 (lower is better)
Translates to: TRYFLSRSRWLQTLT*MPPVSAKLQSFSPD
Trigger: ATCTGGAGAGAATGATTGCAACTTGGCAGAAACTGGTGGCATTCAGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS TCA 90 bp ATATCACTCGATACTTCCTCTCTCGCAGCCGGTGGCTCCAAACATTaGCCTGAATGCCACCAGTTTCTGCCAAGTTGCAATCATTCTCTC +
Preference number: 5 (lower is better)
Translates to: ISLDTSSLAAGGSKH*PECHQFLPSCNHSL
Trigger: GAGAGAATGATTGCAACTTGGCAGAAACTGGTGGCATTCAGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGTGATAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS TCA 90 bp GGTGTCACACCAAAAGATCCTTCAAAGCATTCATCTTCACTGTCATaGACTTCAATGCCTTCGACCAGGGATTGCTTGGCCTGCTCCTTG +
Preference number: 5 (lower is better)
Translates to: GVTPKDPSKHSSSLS*TSMPSTRDCLACSL
Trigger: CAAGGAGCAGGCCAAGCAATCCCTGGTCGAAGGCATTGAAGTTCATGACAGTGAAGATGAATGCTTTGAAGGATCTTTTGGTGTGACACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS-3UTR CAA 90 bp ATGTTGAGTCGCCACTCCATCCTTCTTCCACTGTGGGCTCATTTAGACTGTCAGCCAGTTTCTGCCAAGTaGCAATCATTCTCTCCAGAT +
Preference number: 5 (lower is better)
Translates to: MLSRHSILLPLWAHLDCQPVSAK*QSFSPD
Trigger: ATCTGGAGAGAATGATTGCAACTTGGCAGAAACTGG...CTGACAGTCTAAATGAGCCCACAGTGGAAGAAGGATGGAGTGGCGACTCAACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS TCA 90 bp AAGTTGCAATCATTCTCTCCAGATGCAAGGCTTCCTTCTACATTATaGAAACTTATTGTCACTGATGTCAGCTTCATTCGTTTTATCGGT +
Preference number: 5 (lower is better)
Translates to: KLQSFSPDARLPSTL*KLIVTDVSFIRFIG
Trigger: ACCGATAAAACGAATGAAGCTGACATCAGTGACAATAAGTTTTCATAATGTAGAAGGAAGCCTTGCATCTGGAGAGAATGATTGCAACTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS CAA 72 bp TTCACTGTCATGAACTTCAATGCCTTCGACCAGGGATaGCTTGGCCTGCTCCTTGCCGCGCATGAAAACTGG +
Preference number: 6 (lower is better)
Translates to: FTVMNFNAFDQG*LGLLLAAHENW
Trigger: CCAGTTTTCATGCGCGGCAAGGAGCAGGCCAAGCAATCCCTGGTCGAAGGCATTGAAGTTCATGACAGTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS TCA 72 bp TTCCTCTCTCGCAGCCGGTGGCTCCAAACATTGACCTaGATGCCACCAGTTTCTGCCAAGTTGCAATCATTC +
Preference number: 6 (lower is better)
Translates to: FLSRSRWLQTLT*MPPVSAKLQSF
Trigger: GAATGATTGCAACTTGGCAGAAACTGGTGGCATTCAGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS GCA 72 bp CTTCAAAGCATTCATCTTCACTGTCATGAACTTCAATaGCTTCGACCAGGGATTGCTTGGCCTGCTCCTTGC +
Preference number: 6 (lower is better)
Translates to: LQSIHLHCHELQ*LRPGIAWPAPC
Trigger: GCAAGGAGCAGGCCAAGCAATCCCTGGTCGAAGGCATTGAAGTTCATGACAGTGAAGATGAATGCTTTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS GCA 72 bp GTGGCTCCAAACATTGACCTGAATGCCACCAGTTTCTaGCAAGTTGCAATCATTCTCTCCAGATGCAAGGCT +
Preference number: 6 (lower is better)
Translates to: VAPNIDLNATSF*QVAIILSRCKA
Trigger: AGCCTTGCATCTGGAGAGAATGATTGCAACTTGGCAGAAACTGGTGGCATTCAGGTCAATGTTTGGAGCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS CAA 90 bp CATTCTCTCCAGATGCAAGGCTTCCTTCTACATTATGAAAACTTATaGTCACTGATGTCAGCTTCATTCGTTTTATCGGTGTCACACCAA +
Preference number: 6 (lower is better)
Translates to: HSLQMQGFLLHYENL*SLMSASFVLSVSHQ
Trigger: TTGGTGTGACACCGATAAAACGAATGAAGCTGACATCAGTGACAATAAGTTTTCATAATGTAGAAGGAAGCCTTGCATCTGGAGAGAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS CCA 72 bp TGTAGAAATATCCTGGAATGCCTTGCAGATATTCTTTaGTTCATAAAGCACTTCCATGGGGACCTTTTCACA +
Preference number: 6 (lower is better)
Translates to: CRNILECLADIL*FIKHFHGDLFT
Trigger: TGTGAAAAGGTCCCCATGGAAGTGCTTTATGAACCAAAGAATATCTGCAAGGCATTCCAGGATATTTCTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS TCA 72 bp AAGGCTTCCTTCTACATTATGAAAACTTATTGTCACTaGTGTCAGCTTCATTCGTTTTATCGGTGTCACACC +
Preference number: 6 (lower is better)
Translates to: KASFYIMKTYCH*CQLHSFYRCHT
Trigger: GGTGTGACACCGATAAAACGAATGAAGCTGACATCAGTGACAATAAGTTTTCATAATGTAGAAGGAAGCCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4
CDS GCA 72 bp CTCTTCATCAGAGAAGTATGTAGAAATATCCTGGAATaGCTTGCAGATATTCTTTGGTTCATAAAGCACTTC +
Preference number: 6 (lower is better)
Translates to: LFIREVCRNILE*LADILWFIKHF
Trigger: GAAGTGCTTTATGAACCAAAGAATATCTGCAAGGCATTCCAGGATATTTCTACATACTTCTCTGATGAAGAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037297.4