Pregenerated sensors for SSX9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035371

Ensembl transcript IDs: ENSMUST00000103001.4

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TCGCAGCCGGTTGCTCCAAACATTGACCTGAATGCCACCAGTTTCTaGCAAGTTGGAATCATGCTCTCCAGAGGCAAGTCTTTCTTCTAC	+
Preference number: 5 (lower is better) Translates to: SQPVAPNIDLNATSF*QVGIMLSRGKSFFY Trigger: GTAGAAGAAAGACTTGCCTCTGGAGAGCATGATTCCAACTTGGCAGAAACTGGTGGCATTCAGGTCAATGTTTGGAGCAACCGGCTGCGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103001.4
CDS TCA 90 bp	GGTATCACACCAAAAGATCCTTCAAAGCATTCAACATCACTGTCATaGACTTCAATGCCTTCGAACAGGGATTGCTTGGCCTGCTCCTTG	+
Preference number: 5 (lower is better) Translates to: GITPKDPSKHSTSLS*TSMPSNRDCLACSL Trigger: CAAGGAGCAGGCCAAGCAATCCCTGTTCGAAGGCATTGAAGTTCATGACAGTGATGTTGAATGCTTTGAAGGATCTTTTGGTGTGATACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103001.4
CDS CCA 90 bp	AGAGTAGTATGTAGAAATATCCTGGAAGGCCTTGCAGATATTCTTTaGTTCATAAAGCACTTCCATGGGGATCTTTTCACAGGATCTCAG	+
Preference number: 5 (lower is better) Translates to: RVVCRNILEGLADIL*FIKHFHGDLFTGSQ Trigger: CTGAGATCCTGTGAAAAGATCCCCATGGAAGTGCTTTATGAACCAAAGAATATCTGCAAGGCCTTCCAGGATATTTCTACATACTACTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103001.4
CDS CAA 72 bp	TCAATGCCTTCGAACAGGGATTGCTTGGCCTGCTCCTaGCCACGCATGAAAACTGGTTGGTTCATGGTGACA	+
Preference number: 6 (lower is better) Translates to: SMPSNRDCLACS*PRMKTGWFMVT Trigger: TGTCACCATGAACCAACCAGTTTTCATGCGTGGCAAGGAGCAGGCCAAGCAATCCCTGTTCGAAGGCATTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103001.4
CDS TCA 72 bp	GATATTTCCTCTCTCGCAGCCGGTTGCTCCAAACATTaGCCTGAATGCCACCAGTTTCTGCCAAGTTGGAAT	+
Preference number: 6 (lower is better) Translates to: DISSLAAGCSKH*PECHQFLPSWN Trigger: ATTCCAACTTGGCAGAAACTGGTGGCATTCAGGTCAATGTTTGGAGCAACCGGCTGCGAGAGAGGAAATATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103001.4
CDS GCA 72 bp	CTTCAAAGCATTCAACATCACTGTCATGAACTTCAATaGCTTCGAACAGGGATTGCTTGGCCTGCTCCTTGC	+
Preference number: 6 (lower is better) Translates to: LQSIQHHCHELQ*LRTGIAWPAPC Trigger: GCAAGGAGCAGGCCAAGCAATCCCTGTTCGAAGGCATTGAAGTTCATGACAGTGATGTTGAATGCTTTGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103001.4
CDS CAA 90 bp	CATGCTCTCCAGAGGCAAGTCTTTCTTCTACATTACGAATACTTATaGTCACCAATGTCAGCTTCATTCGTTTTCTCGGTATCACACCAA	+
Preference number: 6 (lower is better) Translates to: HALQRQVFLLHYEYL*SPMSASFVFSVSHQ Trigger: TTGGTGTGATACCGAGAAAACGAATGAAGCTGACATTGGTGACAATAAGTATTCGTAATGTAGAAGAAAGACTTGCCTCTGGAGAGCATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103001.4
CDS TCA 72 bp	ATCATCATCTTCTTCCTCTTCAGGATAACTAATCTCTaGATATATCACTCGATATTTCCTCTCTCGCAGCCG	+
Preference number: 6 (lower is better) Translates to: IIIFFLFRITNL*IYHSIFPLSQP Trigger: CGGCTGCGAGAGAGGAAATATCGAGTGATATATTCAGAGATTAGTTATCCTGAAGAGGAAGAAGATGATGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103001.4
CDS CAA 72 bp	CAGAGGCAAGTCTTTCTTCTACATTACGAATACTTATaGTCACCAATGTCAGCTTCATTCGTTTTCTCGGTA	+
Preference number: 6 (lower is better) Translates to: QRQVFLLHYEYL*SPMSASFVFSV Trigger: TACCGAGAAAACGAATGAAGCTGACATTGGTGACAATAAGTATTCGTAATGTAGAAGAAAGACTTGCCTCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103001.4

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