Pregenerated sensors for SSU72 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029038Ensembl transcript IDs: ENSMUST00000030905.9, ENSMUST00000105595.2
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CAGCCTGTTGCTTTATTTAGGTTTCTGTACAATTCAGCAGTGGAGAGAAAAGGGCAACAAAGGTGGCTGTaGAGGGCAGGCCATGCACCG | + |
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Preference number: 2 (lower is better) Translates to: QPVALFRFLYNSAVERKGQQRWL*RAGHAP Trigger: CGGTGCATGGCCTGCCCTGCACAGCCACCTTTGTTG...CCCTTTTCTCTCCACTGCTGAATTGTACAGAAACCTAAATAAAGCAACAGGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030905.9 |
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| 3UTR-3UTR CCA 90 bp | TTAGGTTTCTGTACAATTCAGCAGTGGAGAGAAAAGGGCCAACAACAGACACTTTGGCTTCAACAAAGGTaGCTGTGCAGGGCAGGCCAT | + |
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Preference number: 2 (lower is better) Translates to: LGFCTIQQWREKGQQQTLWLQQR*LCRAGH Trigger: ATGGCCTGCCCTGCACAGCCACCTTTGTTGAAGCCA...AAGTGTCTGTTGTTGGCCCTTTTCTCTCCACTGCTGAATTGTACAGAAACCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030905.9 |
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| 3UTR-3UTR CCA 90 bp | TTAGGTTTCTGTACAATTCAGCAGTGGAGAGAAAAGGGCCAACAACAGACACTTAACACACTGAAAAAGTaGCTTCAACAAAGGTGGCTG | + |
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Preference number: 2 (lower is better) Translates to: LGFCTIQQWREKGQQQTLNTLKK*LQQRWL Trigger: CAGCCACCTTTGTTGAAGCCACTTTTTCAGTGTGTT...AAGTGTCTGTTGTTGGCCCTTTTCTCTCCACTGCTGAATTGTACAGAAACCTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030905.9 |
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| 3UTR CCA 72 bp | CTGTTGCTTTATTTAGGTTTCTGTACAATTCAGCAGTaGAGAGAAAAGGGCCAACAACAGACACTTGCTGTA | + |
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Preference number: 3 (lower is better) Translates to: LLLYLGFCTIQQ*REKGQQQTLAV Trigger: TACAGCAAGTGTCTGTTGTTGGCCCTTTTCTCTCCACTGCTGAATTGTACAGAAACCTAAATAAAGCAACAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030905.9 |
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| CDS-3UTR GCA 90 bp | GTGGCTTCAACAAAGGTGGCTGTGCAGGGCAGGCCATGCACCGAGCACAGGAGGATTGGGCTTGTCAGGTaGTGGTCCTGGGAGCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: VASTKVAVQGRPCTEHRRIGLVR*WSWELH Trigger: GTGAAGCTCCCAGGACCAGCACCTGACAAGCCCAAT...CCTCCTGTGCTCGGTGCATGGCCTGCCCTGCACAGCCACCTTTGTTGAAGCCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030905.9 |
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| CDS-3UTR CCA 90 bp | GTGGCTTCAACAAAGGTGGCTGTGCAGGGCAGGCCATGCACCGAGCACAGGAGGTCTTCATGGTTGTCCTaGATGTCCACATTGACCACA | + |
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Preference number: 4 (lower is better) Translates to: VASTKVAVQGRPCTEHRRSSWLS*MSTLTT Trigger: TGTGGTCAATGTGGACATCCAGGACAACCATGAAGA...CCTCCTGTGCTCGGTGCATGGCCTGCCCTGCACAGCCACCTTTGTTGAAGCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030905.9 |
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| CDS-3UTR GCA 90 bp | TGTACAATTCAGCAGTGGAGAGAAAAGGGCCAACAACAGACACTTGCTGTAGGCTCCACATTGACCACATaGACTGGCTGGCAGGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: CTIQQWREKGQQQTLAVGSTLTT*TGWQVS Trigger: GGAGACCTGCCAGCCAGTGCATGTGGTCAATGTGGA...GCCTACAGCAAGTGTCTGTTGTTGGCCCTTTTCTCTCCACTGCTGAATTGTACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030905.9 |
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| CDS-3UTR CCA 90 bp | TTTAGGTTTCTGTACAATTCAGCAGTGGAGAGAAAAGGGCCAACAACAGACACTGGGCTTGTCAGGTGCTaGTCCTGGGAGCTTCACATG | + |
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Preference number: 4 (lower is better) Translates to: FRFLYNSAVERKGPTTDTGLVRC*SWELHM Trigger: CATGTGAAGCTCCCAGGACCAGCACCTGACAAGCCC...AGTGTCTGTTGTTGGCCCTTTTCTCTCCACTGCTGAATTGTACAGAAACCTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030905.9 |
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| CDS-3UTR CCA 90 bp | TGGAGAGAAAAGGGCCAACAACAGACACTTGCTGTAGGCTGTAGAGTAAACCATGTGTGCTGGATACACTaGCAGAGCTCGCAGATAAGG | + |
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Preference number: 4 (lower is better) Translates to: WREKGQQQTLAVGCRVNHVCWIH*QSSQIR Trigger: CCTTATCTGCGAGCTCTGCCAGTGTATCCAGCACAC...ATGGTTTACTCTACAGCCTACAGCAAGTGTCTGTTGTTGGCCCTTTTCTCTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030905.9 |
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| CDS-3UTR GCA 90 bp | AGGTTTCTGTACAATTCAGCAGTGGAGAGAAAAGGGCCAACAACAGACACTTGCGCTGAGGATGTTGTGTaGTTCCATGCTCCGATTCTG | + |
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Preference number: 4 (lower is better) Translates to: RFLYNSAVERKGPTTDTCAEDVV*FHAPIL Trigger: CAGAATCGGAGCATGGAAGCACACAACATCCTCAGC...GCAAGTGTCTGTTGTTGGCCCTTTTCTCTCCACTGCTGAATTGTACAGAAACCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030905.9 |
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| CDS-3UTR CCA 90 bp | TTTAGGTTTCTGTACAATTCAGCAGTGGAGAGAAAAGGGCCAACAACAGACACTGTCAGGTGCTGGTCCTaGGAGCTTCACATGAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: FRFLYNSAVERKGPTTDTVRCWS*ELHMSS Trigger: GGAACTCATGTGAAGCTCCCAGGACCAGCACCTGAC...AGTGTCTGTTGTTGGCCCTTTTCTCTCCACTGCTGAATTGTACAGAAACCTAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030905.9 |
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| CDS-3UTR GCA 90 bp | TTTAGGTTTCTGTACAATTCAGCAGTGGAGAGAAAAGGGCCAACAACAGACACTTTCTCCTCGAACTCCTaGAGCAGCTCGTCGATTTCA | + |
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Preference number: 4 (lower is better) Translates to: FRFLYNSAVERKGPTTDTFSSNS*SSSSIS Trigger: TGAAATCGACGAGCTGCTGCAGGAGTTCGAGGAGAA...AGTGTCTGTTGTTGGCCCTTTTCTCTCCACTGCTGAATTGTACAGAAACCTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030905.9 |
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| CDS-3UTR GCA 90 bp | TTAGGTTTCTGTACAATTCAGCAGTGGAGAGAAAAGGGCCAACAACAGACACTTAGTCAAACAGGTCCGTaGAGTTCTGGAACCTTTCTG | + |
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Preference number: 4 (lower is better) Translates to: LGFCTIQQWREKGQQQTLSQTGP*SSGTFL Trigger: CAGAAAGGTTCCAGAACTGCACGGACCTGTTTGACT...AAGTGTCTGTTGTTGGCCCTTTTCTCTCCACTGCTGAATTGTACAGAAACCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030905.9 |
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| CDS-3UTR CCA 90 bp | TTCTTTTGGTTAAAAACAATGGATTTGAATCTGGCATTTCTGCGTACGTCTCATAGGTCCGTGCAGTTCTaGAACCTTTCTGGACGGGGC | + |
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Preference number: 4 (lower is better) Translates to: FFWLKTMDLNLAFLRTSHRSVQF*NLSGRG Trigger: GCCCCGTCCAGAAAGGTTCCAGAACTGCACGGACCT...ATGAGACGTACGCAGAAATGCCAGATTCAAATCCATTGTTTTTAACCAAAAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030905.9 |
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| CDS-3UTR TCA 90 bp | CTTTTGGTTAAAAACAATGGATTTGAATCTGGCATTTCTGCGTACGTCTCATTCCCTGGGAGCTTCACATaGGTTCCTGTTCCAAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: LLVKNNGFESGISAYVSFPGSFT*VPVPKE Trigger: CTCCTTTGGAACAGGAACTCATGTGAAGCTCCCAGG...GAATGAGACGTACGCAGAAATGCCAGATTCAAATCCATTGTTTTTAACCAAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030905.9 |
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| CDS-3UTR GCA 90 bp | TTCTTTTGGTTAAAAACAATGGATTTGAATCTGGCATTTCTGCGTACGTCTCATTCCATGTCCTCAGTGTaGTGGATACACTGGCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: FFWLKTMDLNLAFLRTSHSMSSV*WIHWQS Trigger: GCTCTGCCAGTGTATCCAGCACACTGAGGACATGGA...ATGAGACGTACGCAGAAATGCCAGATTCAAATCCATTGTTTTTAACCAAAAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030905.9 |
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| CDS-3UTR CCA 90 bp | TTCTTTTGGTTAAAAACAATGGATTTGAATCTGGCATTTCTGCGTACGTCTCATATGTCCTCAGTGTGCTaGATACACTGGCAGAGCTCG | + |
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Preference number: 4 (lower is better) Translates to: FFWLKTMDLNLAFLRTSHMSSVC*IHWQSS Trigger: CGAGCTCTGCCAGTGTATCCAGCACACTGAGGACAT...ATGAGACGTACGCAGAAATGCCAGATTCAAATCCATTGTTTTTAACCAAAAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030905.9 |
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| CDS CCA 90 bp | GCTATGAGAAGCCCCAACAGGACCCAGGAGCTTAGACTCACACACTaGCAGAGCTCGCAGATAAGGAATGCTCCCAGAGTGGCCTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: AMRSPNRTQELRLTH*QSSQIRNAPRVASS Trigger: TGAAGAGGCCACTCTGGGAGCATTCCTTATCTGCGAGCTCTGCCAGTGTGTGAGTCTAAGCTCCTGGGTCCTGTTGGGGCTTCTCATAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105595.2 |
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| CDS-3UTR CAA 90 bp | AGGTTTCTGTACAATTCAGCAGTGGAGAGAAAAGGGCCAACAACAGACACTTGCCGCTTGCTGAGGATGTaGTGTGCTTCCATGCTCCGA | + |
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Preference number: 5 (lower is better) Translates to: RFLYNSAVERKGPTTDTCRLLRM*CASMLR Trigger: TCGGAGCATGGAAGCACACAACATCCTCAGCAAGCG...GCAAGTGTCTGTTGTTGGCCCTTTTCTCTCCACTGCTGAATTGTACAGAAACCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030905.9 |
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| CDS CCA 72 bp | AGCCCCAACAGGACCCAGGAGCTTAGACTCACACACTaGCAGAGCTCGCAGATAAGGAATGCTCCCAGAGTG | + |
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Preference number: 6 (lower is better) Translates to: SPNRTQELRLTH*QSSQIRNAPRV Trigger: CACTCTGGGAGCATTCCTTATCTGCGAGCTCTGCCAGTGTGTGAGTCTAAGCTCCTGGGTCCTGTTGGGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105595.2 |
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| CDS GCA 72 bp | GCGGACACTGAAACCTCGCTTGCTGAGGATGTTGTGTaGTTCCATGCTCCGATTCTGGTTACTCGAGCACAC | + |
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Preference number: 6 (lower is better) Translates to: ADTETSLAEDVV*FHAPILVTRAH Trigger: GTGTGCTCGAGTAACCAGAATCGGAGCATGGAAGCACACAACATCCTCAGCAAGCGAGGTTTCAGTGTCCGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030905.9 ENSMUST00000105595.2 |
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| CDS CAA 72 bp | AAGGAGCGGACACTGAAACCTCGCTTGCTGAGGATGTaGTGTGCTTCCATGCTCCGATTCTGGTTACTCGAG | + |
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Preference number: 6 (lower is better) Translates to: KERTLKPRLLRM*CASMLRFWLLE Trigger: CTCGAGTAACCAGAATCGGAGCATGGAAGCACACAACATCCTCAGCAAGCGAGGTTTCAGTGTCCGCTCCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030905.9 ENSMUST00000105595.2 |
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