RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SSU2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034387

Ensembl transcript IDs: ENSMUST00000060847.6, ENSMUST00000238755.2

Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGTaGCCACCACACATCAGAAACCCTTCCCTATGTCTTCTGTATATT +
Preference number: 1 (lower is better)
Translates to: MACTDSGLQGFPSTV*PPHIRNPSLCLLYI
Trigger: AATATACAGAAGACATAGGGAAGGGTTTCTGATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
3UTR CCA 90 bp CCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGATGTGGTaGCTTTACCAAGTGCCTGGCACCAACATACCATCAAGCTGCCAA +
Preference number: 1 (lower is better)
Translates to: PSEEAVGQMSEFKMW*LYQVPGTNIPSSCQ
Trigger: TTGGCAGCTTGATGGTATGTTGGTGCCAGGCACTTGGTAAAGCCACCACATCTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
3UTR CCA 90 bp CATCCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGATGTaGTGGCTTTACCAAGTGCCTGGCACCAACATACCATCAAGCTGC +
Preference number: 1 (lower is better)
Translates to: HPSEEAVGQMSEFKM*WLYQVPGTNIPSSC
Trigger: GCAGCTTGATGGTATGTTGGTGCCAGGCACTTGGTAAAGCCACCACATCTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
3UTR CCA 90 bp TCAGAAACCCTTCCCTATGTCTTCTGTATATTCTCCAAAGGCAGCTaGCTTCACAGGCATCCCTCAGAGGAAGCTGTGGGGCAGATGAGT +
Preference number: 1 (lower is better)
Translates to: SETLPYVFCIFSKGS*LHRHPSEEAVGQMS
Trigger: ACTCATCTGCCCCACAGCTTCCTCTGAGGGATGCCTGTGAAGCCAGCTGCCTTTGGAGAATATACAGAAGACATAGGGAAGGGTTTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
3UTR GCA 90 bp ATGTGGTGGCTTTACCAAGTGCCTGGCACCAACATACCATCAAGCTaGCAAAATTCTTCAGCATTCCTTGGAACTCAAGTCCAAGGTCAT +
Preference number: 1 (lower is better)
Translates to: MWWLYQVPGTNIPSS*QNSSAFLGTQVQGH
Trigger: ATGACCTTGGACTTGAGTTCCAAGGAATGCTGAAGAATTTTGGCAGCTTGATGGTATGTTGGTGCCAGGCACTTGGTAAAGCCACCACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
3UTR-3UTR TCA 90 bp CCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATGTGGGGCAGATGAGTaGATTCAAGATGTGGTGGCT +
Preference number: 2 (lower is better)
Translates to: PAPTQGSRASHLLCAHHTCGADE*IQDVVA
Trigger: AGCCACCACATCTTGAATTCACTCATCTGCCCCACA...TGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
3UTR-3UTR GCA 90 bp CTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATAACATACCATCAAGCTaGCAAAATTCTTCAGCATTC +
Preference number: 2 (lower is better)
Translates to: LHRLRAPGLPIYCVPTTHNIPSS*QNSSAF
Trigger: GAATGCTGAAGAATTTTGGCAGCTTGATGGTATGTT...ATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
3UTR TCA 72 bp TTCACAGGCATCCCTCAGAGGAAGCTGTGGGGCAGATaGGTGAATTCAAGATGTGGTGGCTTTACCAAGTGC +
Preference number: 3 (lower is better)
Translates to: FTGIPQRKLWGR*VNSRCGGFTKC
Trigger: GCACTTGGTAAAGCCACCACATCTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGGATGCCTGTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
3UTR-3UTR CAA 90 bp TTTGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGATTCTTCAGCATTCCTaGGAACTCAAGTCCAAGGTC +
Preference number: 3 (lower is better)
Translates to: FVLMACTDSGLQGFPSTVILQHS*ELKSKV
Trigger: GACCTTGGACTTGAGTTCCAAGGAATGCTGAAGAAT...CACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
3UTR GCA 72 bp CTTTACCAAGTGCCTGGCACCAACATACCATCAAGCTaGCAAAATTCTTCAGCATTCCTTGGAACTCAAGTC +
Preference number: 3 (lower is better)
Translates to: LYQVPGTNIPSS*QNSSAFLGTQV
Trigger: GACTTGAGTTCCAAGGAATGCTGAAGAATTTTGGCAGCTTGATGGTATGTTGGTGCCAGGCACTTGGTAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR GCA 90 bp GGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATCAGAAACCCTTCCTCCCAGAGCACGTACTaGACCTGCGTCGGCCAGAGC +
Preference number: 4 (lower is better)
Translates to: GLQGFPSTVCPPHIRNPSSQSTY*TCVGQS
Trigger: GCTCTGGCCGACGCAGGTGCAGTACGTGCTCTGGGA...GGAAGGGTTTCTGATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR CCA 90 bp TTTGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGCAACACGCAGGCTCCTaGGACCTCCCCAGGGCCTCC +
Preference number: 4 (lower is better)
Translates to: FVLMACTDSGLQGFPSTVQHAGS*DLPRAS
Trigger: GGAGGCCCTGGGGAGGTCCCAGGAGCCTGCGTGTTG...CACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR CCA 90 bp CTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATGAGGAGTGGGGCACTTaGAGCTTTCTGGTGTCTTCC +
Preference number: 4 (lower is better)
Translates to: LHRLRAPGLPIYCVPTTHEEWGT*SFLVSS
Trigger: GGAAGACACCAGAAAGCTCCAAGTGCCCCACTCCTC...ATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR TCA 90 bp CTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATTGGCATTCTCATCCCTaGAGAGGTTTTCCCCTCTGG +
Preference number: 4 (lower is better)
Translates to: LHRLRAPGLPIYCVPTTHWHSHP*RGFPLW
Trigger: CCAGAGGGGAAAACCTCTTCAGGGATGAGAATGCCA...ATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR GCA 90 bp TTTTGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTCCCCATGGCAGCCGCTaGACTTGTAGCGACCACGCC +
Preference number: 4 (lower is better)
Translates to: FCFNGLHRLRAPGLPIYCPHGSR*TCSDHA
Trigger: GGCGTGGTCGCTACAAGTGCAGCGGCTGCCATGGGG...ACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACAAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR GCA 90 bp TGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGTGTGGCATCTCCGGGGCTaGTTGGCTTTGCGCTTGGTG +
Preference number: 4 (lower is better)
Translates to: CFNGLHRLRAPGLPIYCVWHLRG*LALRLV
Trigger: CACCAAGCGCAAAGCCAAGCAGCCCCGGAGATGCCA...CACACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR CCA 90 bp AGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATCAGAAACCCTTCTCTCCCCCTTGCAGGTaGCGCATGTCTTGTTGCCTC +
Preference number: 4 (lower is better)
Translates to: RAPGLPIYCVPTTHQKPFSPPCR*RMSCCL
Trigger: GAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGA...GAAGGGTTTCTGATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR CCA 90 bp TCAGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATCAGAAACCCTTTGACCAGGGAGGAGTaGGGCACTTGGAGCTTTCTG +
Preference number: 4 (lower is better)
Translates to: SGLQGFPSTVCPPHIRNPLTREE*GTWSFL
Trigger: CAGAAAGCTCCAAGTGCCCCACTCCTCCCTGGTCAA...AGGGTTTCTGATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR CCA 90 bp TGGCTTCACAGGCATCCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGATCTCCGGGGCTGCTTaGCTTTGCGCTTGGTGCCAC +
Preference number: 4 (lower is better)
Translates to: WLHRHPSEEAVGQMSEFKISGAA*LCAWCH
Trigger: GTGGCACCAAGCGCAAAGCCAAGCAGCCCCGGAGAT...CTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGGATGCCTGTGAAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR GCA 90 bp TGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGTGGAGGTTGCCAGCAGCTaGACTGCTGTAACAGCAATG +
Preference number: 4 (lower is better)
Translates to: CFNGLHRLRAPGLPIYCVEVASS*TAVTAM
Trigger: CATTGCTGTTACAGCAGTGCAGCTGCTGGCAACCTC...CACACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR GCA 90 bp CCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGATGTGGTGGCTTTACACCAGCTGGACAAAGTaGTCCAGCTTCCTCTCCCCC +
Preference number: 4 (lower is better)
Translates to: PSEEAVGQMSEFKMWWLYTSWTK*SSFLSP
Trigger: GGGGGAGAGGAAGCTGGAGCACTTTGTCCAGCTGGT...GTAAAGCCACCACATCTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR GCA 90 bp TTTGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGACATCTGCTGAAGGATaGGAGCACGGGAAGCCAGCA +
Preference number: 4 (lower is better)
Translates to: FVLMACTDSGLQGFPSTVTSAEG*EHGKPA
Trigger: TGCTGGCTTCCCGTGCTCGCATCCTTCAGCAGATGT...CACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR CCA 90 bp TTTTGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGAAGCCAGTCATAGCTaGGCAACCCCTCCAGGAGCT +
Preference number: 4 (lower is better)
Translates to: FCFNGLHRLRAPGLPIYCEASHS*ATPPGA
Trigger: AGCTCCTGGAGGGGTTGCCCAGCTATGACTGGCTTC...ACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR CCA 90 bp CAGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATCAGAAACCCTTCACATGATGACCAGCTaGACAAAGTGCTCCAGCTTC +
Preference number: 4 (lower is better)
Translates to: QGSRASHLLCAHHTSETLHMMTS*TKCSSF
Trigger: GAAGCTGGAGCACTTTGTCCAGCTGGTCATCATGTG...AAGGGTTTCTGATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR CCA 90 bp CTTCACAGGCATCCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGATGAGCTCCTTGGGGCAGTaGAGGTGGTGTGGGGACATA +
Preference number: 4 (lower is better)
Translates to: LHRHPSEEAVGQMSEFKMSSLGQ*RWCGDI
Trigger: TATGTCCCCACACCACCTCCACTGCCCCAAGGAGCT...CATCTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGGATGCCTGTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR TCA 90 bp CCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGATGTGGTGGCTTTACTCTCAGCCTCAAAGCTaGGGTCAGCCATGCTGTCCT +
Preference number: 4 (lower is better)
Translates to: PSEEAVGQMSEFKMWWLYSQPQS*GQPCCP
Trigger: AGGACAGCATGGCTGACCTCAGCTTTGAGGCTGAGA...GTAAAGCCACCACATCTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR TCA 90 bp TGGCTTCACAGGCATCCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGATTTGTGACATTCCTTaGCCAGGGAGGAGTGGGGCA +
Preference number: 4 (lower is better)
Translates to: WLHRHPSEEAVGQMSEFKICDIP*PGRSGA
Trigger: TGCCCCACTCCTCCCTGGTCAAGGAATGTCACAAAT...CTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGGATGCCTGTGAAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR GCA 90 bp TGGCTTCACAGGCATCCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGTGCCAGCAGCTGCACTaGTGTAACAGCAATGGGAGT +
Preference number: 4 (lower is better)
Translates to: WLHRHPSEEAVGQMSEFKCQQLH*CNSNGS
Trigger: ACTCCCATTGCTGTTACAGCAGTGCAGCTGCTGGCA...CTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGGATGCCTGTGAAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR GCA 90 bp TTTTGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTTACTGTGTTCCTCAATaGCCCTCTGGGAGGCCAAAG +
Preference number: 4 (lower is better)
Translates to: FCFNGLHRLRAPGLPIYCYCVPQ*PSGRPK
Trigger: CTTTGGCCTCCCAGAGGGGCATTGAGGAACACAGTA...ACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR CCA 90 bp CCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGATGTGGTGGCTTTACTTGGGGCAGTGGAGGTaGTGTGGGGACATAAACTCA +
Preference number: 4 (lower is better)
Translates to: PSEEAVGQMSEFKMWWLYLGQWR*CGDINS
Trigger: TGAGTTTATGTCCCCACACCACCTCCACTGCCCCAA...GTAAAGCCACCACATCTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR CCA 90 bp GTGGCTTTACCAAGTGCCTGGCACCAACATACCATCAAGCTGCCAAAATTCTTCTTTCCCCTCTGGCTTTaGCAAGCAGCTCCTTGGGGC +
Preference number: 4 (lower is better)
Translates to: VALPSAWHQHTIKLPKFFFPLWL*QAAPWG
Trigger: GCCCCAAGGAGCTGCTTGCCAAAGCCAGAGGGGAAA...GAAGAATTTTGGCAGCTTGATGGTATGTTGGTGCCAGGCACTTGGTAAAGCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR GCA 90 bp TACCATCAAGCTGCCAAAATTCTTCAGCATTCCTTGGAACTCAAGTCCAAGGTCATGAACACCTCACCATaGCAGCCCCATGGCAGCCGC +
Preference number: 4 (lower is better)
Translates to: YHQAAKILQHSLELKSKVMNTSP*QPHGSR
Trigger: GCGGCTGCCATGGGGCTGGCATGGTGAGGTGTTCAT...GACCTTGGACTTGAGTTCCAAGGAATGCTGAAGAATTTTGGCAGCTTGATGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR TCA 90 bp CAAGCTGCCAAAATTCTTCAGCATTCCTTGGAACTCAAGTCCAAGGTCATCATGCGCCCGTGGCATTTGTaGCATTCCTTGACCAGGGAG +
Preference number: 4 (lower is better)
Translates to: QAAKILQHSLELKSKVIMRPWHL*HSLTRE
Trigger: CTCCCTGGTCAAGGAATGTCACAAATGCCACGGGCG...CATGATGACCTTGGACTTGAGTTCCAAGGAATGCTGAAGAATTTTGGCAGCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR GCA 90 bp GATTTTGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGCCAAAGAGATGTCTTaGAGGGGGAAATCCACAATG +
Preference number: 4 (lower is better)
Translates to: DFVLMACTDSGLQGFPSTAKEMS*RGKSTM
Trigger: CATTGTGGATTTCCCCCTGCAAGACATCTCTTTGGC...AGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACAAAATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR CCA 90 bp GTGGCTTTACCAAGTGCCTGGCACCAACATACCATCAAGCTGCCAAAATTCTTCAGAGGTTTTCCCCTCTaGCTTTGGCAAGCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: VALPSAWHQHTIKLPKFFRGFPL*LWQAAP
Trigger: AGGAGCTGCTTGCCAAAGCCAGAGGGGAAAACCTCT...GAAGAATTTTGGCAGCTTGATGGTATGTTGGTGCCAGGCACTTGGTAAAGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR CCA 90 bp ATGTGGTGGCTTTACCAAGTGCCTGGCACCAACATACCATCAAGCTGCCAAAATTCCTCAATGCCCCTCTaGGAGGCCAAAGAGATGTCT +
Preference number: 4 (lower is better)
Translates to: MWWLYQVPGTNIPSSCQNSSMPL*EAKEMS
Trigger: AGACATCTCTTTGGCCTCCCAGAGGGGCATTGAGGA...ATTTTGGCAGCTTGATGGTATGTTGGTGCCAGGCACTTGGTAAAGCCACCACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR CCA 90 bp ATGTGGTGGCTTTACCAAGTGCCTGGCACCAACATACCATCAAGCTGCCAAAATGCAGTGGAGGTGGTGTaGGGACATAAACTCAAACAG +
Preference number: 4 (lower is better)
Translates to: MWWLYQVPGTNIPSSCQNAVEVV*GHKLKQ
Trigger: CTGTTTGAGTTTATGTCCCCACACCACCTCCACTGC...ATTTTGGCAGCTTGATGGTATGTTGGTGCCAGGCACTTGGTAAAGCCACCACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR TCA 90 bp TCTACTGTGTGCCCACCACACATCAGAAACCCTTCCCTATGTCTTCTGTATATTTTTCTGGTGTCTTCCTaGAACATCGGAGGCACCTGG +
Preference number: 4 (lower is better)
Translates to: STVCPPHIRNPSLCLLYIFLVSS*NIGGTW
Trigger: CCAGGTGCCTCCGATGTTTCAGGAAGACACCAGAAA...AATATACAGAAGACATAGGGAAGGGTTTCTGATGTGTGGTGGGCACACAGTAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR GCA 90 bp TACCATCAAGCTGCCAAAATTCTTCAGCATTCCTTGGAACTCAAGTCCAAGGTCACAGGGACTCTGCTGTaGTCCAGGACTGAAGACCAA +
Preference number: 4 (lower is better)
Translates to: YHQAAKILQHSLELKSKVTGTLL*SRTEDQ
Trigger: TTGGTCTTCAGTCCTGGAGCACAGCAGAGTCCCTGT...GACCTTGGACTTGAGTTCCAAGGAATGCTGAAGAATTTTGGCAGCTTGATGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS GCA 90 bp AGGGCCTCACGGGCCACCTCCTCGGTCACCACAGGGACTCTGCTGTaGTCCAGGACTGAAGACCAACACGCAGGCTCCTGGGACCTCCCC +
Preference number: 5 (lower is better)
Translates to: RASRATSSVTTGTLL*SRTEDQHAGSWDLP
Trigger: GGGGAGGTCCCAGGAGCCTGCGTGTTGGTCTTCAGTCCTGGAGCACAGCAGAGTCCCTGTGGTGACCGAGGAGGTGGCCCGTGAGGCCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS TCA 90 bp GGCCACCTCCTCGGTCACCACAGGGACTCTGCTGTGCTCCAGGACTaGAGACCAACACGCAGGCTCCTGGGACCTCCCCAGGGCCTCCAA +
Preference number: 5 (lower is better)
Translates to: GHLLGHHRDSAVLQD*RPTRRLLGPPQGLQ
Trigger: TTGGAGGCCCTGGGGAGGTCCCAGGAGCCTGCGTGTTGGTCTTCAGTCCTGGAGCACAGCAGAGTCCCTGTGGTGACCGAGGAGGTGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS TCA 90 bp ACGGGCCACCTCCTCGGTCACCACAGGGACTCTGTGCTCCAGGACTaGAGACCAACACGCAGGCTCCTGGGACCTCCCCAGGGCCTCCAA +
Preference number: 5 (lower is better)
Translates to: TGHLLGHHRDSVLQD*RPTRRLLGPPQGLQ
Trigger: TTGGAGGCCCTGGGGAGGTCCCAGGAGCCTGCGTGTTGGTCTTCAGTCCTGGAGCACAGAGTCCCTGTGGTGACCGAGGAGGTGGCCCGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238755.2
CDS GCA 90 bp AGTAGGGCCTCACGGGCCACCTCCTCGGTCACCACAGGGACTCTGTaGTCCAGGACTGAAGACCAACACGCAGGCTCCTGGGACCTCCCC +
Preference number: 5 (lower is better)
Translates to: SRASRATSSVTTGTL*SRTEDQHAGSWDLP
Trigger: GGGGAGGTCCCAGGAGCCTGCGTGTTGGTCTTCAGTCCTGGAGCACAGAGTCCCTGTGGTGACCGAGGAGGTGGCCCGTGAGGCCCTACT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238755.2
CDS GCA 90 bp CACCTGCGTCGGCCAGAGCCAGAACACAGGTGGCATCTCCGGGGCTaGTTGGCTTTGCGCTTGGTGCCACTGCAGGATGAACACCTCACC +
Preference number: 5 (lower is better)
Translates to: HLRRPEPEHRWHLRG*LALRLVPLQDEHLT
Trigger: GGTGAGGTGTTCATCCTGCAGTGGCACCAAGCGCAAAGCCAAGCAGCCCCGGAGATGCCACCTGTGTTCTGGCTCTGGCCGACGCAGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS GCA 90 bp CCTTGCAGGTGGCGCATGTCTTGTTGCCTCTCCCAGAGCACGTACTaGACCTGCGTCGGCCAGAGCCAGAACACAGGTGGCATCTCCGGG +
Preference number: 5 (lower is better)
Translates to: PCRWRMSCCLSQSTY*TCVGQSQNTGGISG
Trigger: CCCGGAGATGCCACCTGTGTTCTGGCTCTGGCCGACGCAGGTGCAGTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS GCA 90 bp AGTGCTCCAGCTTCCTCTCCCCCTTGCAGGTGGCGCATGTCTTGTTaGCTCTCCCAGAGCACGTACTGCACCTGCGTCGGCCAGAGCCAG +
Preference number: 5 (lower is better)
Translates to: SAPASSPPCRWRMSC*LSQSTYCTCVGQSQ
Trigger: CTGGCTCTGGCCGACGCAGGTGCAGTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCTGGAGCACT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS GCA 90 bp CAGAACACAGGTGGCATCTCCGGGGCTGCTTGGCTTTGCGCTTGGTaGCACTGCAGGATGAACACCTCACCATGCCAGCCCCATGGCAGC +
Preference number: 5 (lower is better)
Translates to: QNTGGISGAAWLCAW*HCRMNTSPCQPHGS
Trigger: GCTGCCATGGGGCTGGCATGGTGAGGTGTTCATCCTGCAGTGGCACCAAGCGCAAAGCCAAGCAGCCCCGGAGATGCCACCTGTGTTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS CCA 90 bp AGCCAGAACACAGGTGGCATCTCCGGGGCTGCTTGGCTTTGCGCTTaGTGCCACTGCAGGATGAACACCTCACCATGCCAGCCCCATGGC +
Preference number: 5 (lower is better)
Translates to: SQNTGGISGAAWLCA*CHCRMNTSPCQPHG
Trigger: GCCATGGGGCTGGCATGGTGAGGTGTTCATCCTGCAGTGGCACCAAGCGCAAAGCCAAGCAGCCCCGGAGATGCCACCTGTGTTCTGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS CCA 90 bp TGCGTCGGCCAGAGCCAGAACACAGGTGGCATCTCCGGGGCTGCTTaGCTTTGCGCTTGGTGCCACTGCAGGATGAACACCTCACCATGC +
Preference number: 5 (lower is better)
Translates to: CVGQSQNTGGISGAA*LCAWCHCRMNTSPC
Trigger: GCATGGTGAGGTGTTCATCCTGCAGTGGCACCAAGCGCAAAGCCAAGCAGCCCCGGAGATGCCACCTGTGTTCTGGCTCTGGCCGACGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS TCA 90 bp TGCCAGCAGCTGCACTGCTGTAACAGCAATGGGAGTTCACGAAGCTaGGTAGGGCCTCACGGGCCACCTCCTCGGTCACCACAGGGACTC +
Preference number: 5 (lower is better)
Translates to: CQQLHCCNSNGSSRS*VGPHGPPPRSPQGL
Trigger: GAGTCCCTGTGGTGACCGAGGAGGTGGCCCGTGAGGCCCTACTCAGCTTCGTGAACTCCCATTGCTGTTACAGCAGTGCAGCTGCTGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS-3UTR CAA 90 bp AGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATCAGAAACCCTTCCATCTCCGGGGCTGCTaGGCTTTGCGCTTGGTGCCA +
Preference number: 5 (lower is better)
Translates to: RAPGLPIYCVPTTHQKPFHLRGC*ALRLVP
Trigger: TGGCACCAAGCGCAAAGCCAAGCAGCCCCGGAGATG...GAAGGGTTTCTGATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS GCA 90 bp ACATCGGAGGCACCTGGACCTTCATATCCCAAAGCCTGGGGGAGGTaGCTCTCTGTGGTCCGTCCACCGAGTGGTTGGTTACAGGCTGAA +
Preference number: 5 (lower is better)
Translates to: TSEAPGPSYPKAWGR*LSVVRPPSGWLQAE
Trigger: TTCAGCCTGTAACCAACCACTCGGTGGACGGACCACAGAGAGGCACCTCCCCCAGGCTTTGGGATATGAAGGTCCAGGTGCCTCCGATGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS CCA 90 bp CGATGGTCTGGCGCTGCTGAAGGATGCGAGCACGGGAAGCCAGCATaGTACTGTGTTCCTCAATGCCCCTCTGGGAGGCCAAAGAGATGT +
Preference number: 5 (lower is better)
Translates to: RWSGAAEGCEHGKPA*YCVPQCPSGRPKRC
Trigger: ACATCTCTTTGGCCTCCCAGAGGGGCATTGAGGAACACAGTACCATGCTGGCTTCCCGTGCTCGCATCCTTCAGCAGCGCCAGACCATCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238755.2
CDS CCA 90 bp GGAAGAAGACCTGCCTTTCACGCCCTTGAAGAAGCCAGTCATAGCTaGGCAACCCCTCCAGGAGCTCATCAGGGGGCAACACAGGACTCT +
Preference number: 5 (lower is better)
Translates to: GRRPAFHALEEASHS*ATPPGAHQGATQDS
Trigger: AGAGTCCTGTGTTGCCCCCTGATGAGCTCCTGGAGGGGTTGCCCAGCTATGACTGGCTTCTTCAAGGGCGTGAAAGGCAGGTCTTCTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS CCA 90 bp CACCTGGACCTTCATATCCCAAAGCCTGGGGGAGGTGCCTCTCTGTaGTCCGTCCACCGAGTGGTTGGTTACAGGCTGAAATGTCCACTC +
Preference number: 5 (lower is better)
Translates to: HLDLHIPKPGGGASL*SVHRVVGYRLKCPL
Trigger: GAGTGGACATTTCAGCCTGTAACCAACCACTCGGTGGACGGACCACAGAGAGGCACCTCCCCCAGGCTTTGGGATATGAAGGTCCAGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS CCA 90 bp CTTCCTGAAACATCGGAGGCACCTGGACCTTCATATCCCAAAGCCTaGGGGAGGTGCCTCTCTGTGGTCCGTCCACCGAGTGGTTGGTTA +
Preference number: 5 (lower is better)
Translates to: LPETSEAPGPSYPKA*GRCLSVVRPPSGWL
Trigger: TAACCAACCACTCGGTGGACGGACCACAGAGAGGCACCTCCCCCAGGCTTTGGGATATGAAGGTCCAGGTGCCTCCGATGTTTCAGGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS-3UTR CAA 90 bp AGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATCAGAAACCCTTCTTTTCCCCTCTGGCTTaGGCAAGCAGCTCCTTGGGG +
Preference number: 5 (lower is better)
Translates to: RAPGLPIYCVPTTHQKPFFSPLA*ASSSLG
Trigger: CCCCAAGGAGCTGCTTGCCAAAGCCAGAGGGGAAAA...GAAGGGTTTCTGATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS TCA 90 bp GAGGTGCCTCTCTGTGGTCCGTCCACCGAGTGGTTGGTTACAGGCTaGAATGTCCACTCGCTGACTCTGGATTCGCTGAAGGTCTCCAGA +
Preference number: 5 (lower is better)
Translates to: EVPLCGPSTEWLVTG*NVHSLTLDSLKVSR
Trigger: TCTGGAGACCTTCAGCGAATCCAGAGTCAGCGAGTGGACATTTCAGCCTGTAACCAACCACTCGGTGGACGGACCACAGAGAGGCACCTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS TCA 90 bp TTGACCAGGGAGGAGTGGGGCACTTGGAGCTTTCTGGTGTCTTCCTaGAACATCGGAGGCACCTGGACCTTCATATCCCAAAGCCTGGGG +
Preference number: 5 (lower is better)
Translates to: LTREEWGTWSFLVSS*NIGGTWTFISQSLG
Trigger: CCCCAGGCTTTGGGATATGAAGGTCCAGGTGCCTCCGATGTTTCAGGAAGACACCAGAAAGCTCCAAGTGCCCCACTCCTCCCTGGTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS GCA 90 bp GAAGGATGCGAGCACGGGAAGCCAGCATGGTACTGTGTTCCTCAATaGCCCTCTGGGAGGCCAAAGAGATGTCTTGCAGGGGGAAATCCA +
Preference number: 5 (lower is better)
Translates to: EGCEHGKPAWYCVPQ*PSGRPKRCLAGGNP
Trigger: TGGATTTCCCCCTGCAAGACATCTCTTTGGCCTCCCAGAGGGGCATTGAGGAACACAGTACCATGCTGGCTTCCCGTGCTCGCATCCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS-3UTR CAA 90 bp AGCTGGCTTCACAGGCATCCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCGGAGGAGTGGGGCACTaGGAGCTTTCTGGTGTCTTC +
Preference number: 5 (lower is better)
Translates to: SWLHRHPSEEAVGQMSEFGGVGH*ELSGVF
Trigger: GAAGACACCAGAAAGCTCCAAGTGCCCCACTCCTCC...GAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGGATGCCTGTGAAGCCAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR CAA 90 bp CTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATGGCCAAAGAGATGTCTaGCAGGGGGAAATCCACAAT +
Preference number: 5 (lower is better)
Translates to: LHRLRAPGLPIYCVPTTHGQRDV*QGEIHN
Trigger: ATTGTGGATTTCCCCCTGCAAGACATCTCTTTGGCC...ATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR CAA 90 bp TTTTGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTCAGGTGGCGCATGTCTaGTTGCCTCTCCCAGAGCAC +
Preference number: 5 (lower is better)
Translates to: FCFNGLHRLRAPGLPIYCQVAHV*LPLPEH
Trigger: GTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTG...ACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR CAA 90 bp GATTTTGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTAGCTTCCTCTCCCCCTaGCAGGTGGCGCATGTCTTG +
Preference number: 5 (lower is better)
Translates to: DFVLMACTDSGLQGFPSTSFLSP*QVAHVL
Trigger: CAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCT...AGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACAAAATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS CCA 90 bp AGTAGAAAAACATCTGCTGAAGGATGCGAGCACGGGAAGCCAGCATaGTACTGTGTTCCTCAATGCCCCTCTGGGAGGCCAAAGAGATGT +
Preference number: 5 (lower is better)
Translates to: SRKTSAEGCEHGKPA*YCVPQCPSGRPKRC
Trigger: ACATCTCTTTGGCCTCCCAGAGGGGCATTGAGGAACACAGTACCATGCTGGCTTCCCGTGCTCGCATCCTTCAGCAGATGTTTTTCTACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS-3UTR CAA 90 bp CCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGATGTGGTGGCTTTACATACCTGCAGAGGGTTaGCTGCCTCAGCTCCTGAAT +
Preference number: 5 (lower is better)
Translates to: PSEEAVGQMSEFKMWWLYIPAEG*LPQLLN
Trigger: ATTCAGGAGCTGAGGCAGCAAACCCTCTGCAGGTAT...GTAAAGCCACCACATCTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS TCA 90 bp TGTAGTAGACAGAAGTCTTCCCTTGGTACCAGTAATGAACTTCTGTaGTGGGGATCAGCTCGATGGTCTGGCGCTGCTGAAGGATGCGAG +
Preference number: 5 (lower is better)
Translates to: CSRQKSSLGTSNELL*WGSARWSGAAEGCE
Trigger: CTCGCATCCTTCAGCAGCGCCAGACCATCGAGCTGATCCCCATCACAGAAGTTCATTACTGGTACCAAGGGAAGACTTCTGTCTACTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238755.2
CDS-3UTR CAA 90 bp TACCATCAAGCTGCCAAAATTCTTCAGCATTCCTTGGAACTCAAGTCCAAGGTCTTGGCAAGCAGCTCCTaGGGGCAGTGGAGGTGGTGT +
Preference number: 5 (lower is better)
Translates to: YHQAAKILQHSLELKSKVLASSS*GQWRWC
Trigger: ACACCACCTCCACTGCCCCAAGGAGCTGCTTGCCAA...GACCTTGGACTTGAGTTCCAAGGAATGCTGAAGAATTTTGGCAGCTTGATGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS GCA 90 bp AGCAGTATCGCTCAGGGTAGTCAGCCACGTACACCTGGTGGTCAGTaGCATAGATGTAGTAGACAGAAGTCTTCCCTTGGTACCAGTAAT +
Preference number: 5 (lower is better)
Translates to: SSIAQGSQPRTPGGQ*HRCSRQKSSLGTSN
Trigger: ATTACTGGTACCAAGGGAAGACTTCTGTCTACTACATCTATGGCACTGACCACCAGGTGTACGTGGCTGACTACCCTGAGCGATACTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238755.2
CDS-3UTR CAA 90 bp ACCATCAAGCTGCCAAAATTCTTCAGCATTCCTTGGAACTCAAGTCCAAGGTCACTGCCTTTCACGCCCTaGAAGAAGCCAGTCATAGCT +
Preference number: 5 (lower is better)
Translates to: TIKLPKFFSIPWNSSPRSLPFTP*KKPVIA
Trigger: AGCTATGACTGGCTTCTTCAAGGGCGTGAAAGGCAG...TGACCTTGGACTTGAGTTCCAAGGAATGCTGAAGAATTTTGGCAGCTTGATGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS CCA 72 bp CTGTGCTCCAGGACTGAAGACCAACACGCAGGCTCCTaGGACCTCCCCAGGGCCTCCAAGGGCGGGAAGAAG +
Preference number: 6 (lower is better)
Translates to: LCSRTEDQHAGS*DLPRASKGGKK
Trigger: CTTCTTCCCGCCCTTGGAGGCCCTGGGGAGGTCCCAGGAGCCTGCGTGTTGGTCTTCAGTCCTGGAGCACAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS TCA 72 bp CTCGGTCACCACAGGGACTCTGCTGTGCTCCAGGACTaGAGACCAACACGCAGGCTCCTGGGACCTCCCCAG +
Preference number: 6 (lower is better)
Translates to: LGHHRDSAVLQD*RPTRRLLGPPQ
Trigger: CTGGGGAGGTCCCAGGAGCCTGCGTGTTGGTCTTCAGTCCTGGAGCACAGCAGAGTCCCTGTGGTGACCGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060847.6
CDS GCA 72 bp GGTGGCATCTCCGGGGCTGCTTGGCTTTGCGCTTGGTaGCACTGCAGGATGAACACCTCACCATGCCAGCCC +
Preference number: 6 (lower is better)
Translates to: GGISGAAWLCAW*HCRMNTSPCQP
Trigger: GGGCTGGCATGGTGAGGTGTTCATCCTGCAGTGGCACCAAGCGCAAAGCCAAGCAGCCCCGGAGATGCCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS GCA 72 bp GCTTCCTCTCCCCCTTGCAGGTGGCGCATGTCTTGTTaGCTCTCCCAGAGCACGTACTGCACCTGCGTCGGC +
Preference number: 6 (lower is better)
Translates to: ASSPPCRWRMSC*LSQSTYCTCVG
Trigger: GCCGACGCAGGTGCAGTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS GCA 72 bp TCACGGGCCACCTCCTCGGTCACCACAGGGACTCTGTaGTCCAGGACTGAAGACCAACACGCAGGCTCCTGG +
Preference number: 6 (lower is better)
Translates to: SRATSSVTTGTL*SRTEDQHAGSW
Trigger: CCAGGAGCCTGCGTGTTGGTCTTCAGTCCTGGAGCACAGAGTCCCTGTGGTGACCGAGGAGGTGGCCCGTGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238755.2
CDS CCA 72 bp GTACTGCACCTGCGTCGGCCAGAGCCAGAACACAGGTaGCATCTCCGGGGCTGCTTGGCTTTGCGCTTGGTG +
Preference number: 6 (lower is better)
Translates to: VLHLRRPEPEHR*HLRGCLALRLV
Trigger: CACCAAGCGCAAAGCCAAGCAGCCCCGGAGATGCCACCTGTGTTCTGGCTCTGGCCGACGCAGGTGCAGTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS CAA 90 bp CCCCAGGGCCTCCAAGGGCGGGAAGAAGACCTGCCTTTCACGCCCTaGAAGAAGCCAGTCATAGCTGGGCAACCCCTCCAGGAGCTCATC +
Preference number: 6 (lower is better)
Translates to: PQGLQGREEDLPFTP*KKPVIAGQPLQELI
Trigger: GATGAGCTCCTGGAGGGGTTGCCCAGCTATGACTGGCTTCTTCAAGGGCGTGAAAGGCAGGTCTTCTTCCCGCCCTTGGAGGCCCTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS CAA 90 bp AAGTGCTCCAGCTTCCTCTCCCCCTTGCAGGTGGCGCATGTCTTGTaGCCTCTCCCAGAGCACGTACTGCACCTGCGTCGGCCAGAGCCA +
Preference number: 6 (lower is better)
Translates to: KCSSFLSPLQVAHVL*PLPEHVLHLRRPEP
Trigger: TGGCTCTGGCCGACGCAGGTGCAGTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCTGGAGCACTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS GCA 72 bp ATCTCCGGGGCTGCTTGGCTTTGCGCTTGGTGCCACTaGAGGATGAACACCTCACCATGCCAGCCCCATGGC +
Preference number: 6 (lower is better)
Translates to: ISGAAWLCAWCH*RMNTSPCQPHG
Trigger: GCCATGGGGCTGGCATGGTGAGGTGTTCATCCTGCAGTGGCACCAAGCGCAAAGCCAAGCAGCCCCGGAGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS GCA 72 bp TGGCGCATGTCTTGTTGCCTCTCCCAGAGCACGTACTaGACCTGCGTCGGCCAGAGCCAGAACACAGGTGGC +
Preference number: 6 (lower is better)
Translates to: WRMSCCLSQSTY*TCVGQSQNTGG
Trigger: GCCACCTGTGTTCTGGCTCTGGCCGACGCAGGTGCAGTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS CAA 72 bp AGCTTCCTCTCCCCCTTGCAGGTGGCGCATGTCTTGTaGCCTCTCCCAGAGCACGTACTGCACCTGCGTCGG +
Preference number: 6 (lower is better)
Translates to: SFLSPLQVAHVL*PLPEHVLHLRR
Trigger: CCGACGCAGGTGCAGTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS CAA 90 bp ACAAAGTGCTCCAGCTTCCTCTCCCCCTTGCAGGTGGCGCATGTCTaGTTGCCTCTCCCAGAGCACGTACTGCACCTGCGTCGGCCAGAG +
Preference number: 6 (lower is better)
Translates to: TKCSSFLSPLQVAHV*LPLPEHVLHLRRPE
Trigger: CTCTGGCCGACGCAGGTGCAGTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCTGGAGCACTTTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS GCA 72 bp CCAGCTGGACAAAGTGCTCCAGCTTCCTCTCCCCCTTaGAGGTGGCGCATGTCTTGTTGCCTCTCCCAGAGC +
Preference number: 6 (lower is better)
Translates to: PAGQSAPASSPP*RWRMSCCLSQS
Trigger: GCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCTGGAGCACTTTGTCCAGCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS CAA 72 bp TCCAGCTTCCTCTCCCCCTTGCAGGTGGCGCATGTCTaGTTGCCTCTCCCAGAGCACGTACTGCACCTGCGT +
Preference number: 6 (lower is better)
Translates to: SSFLSPLQVAHV*LPLPEHVLHLR
Trigger: ACGCAGGTGCAGTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCTGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS TCA 72 bp CTGCACTGCTGTAACAGCAATGGGAGTTCACGAAGCTaGGTAGGGCCTCACGGGCCACCTCCTCGGTCACCA +
Preference number: 6 (lower is better)
Translates to: LHCCNSNGSSRS*VGPHGPPPRSP
Trigger: TGGTGACCGAGGAGGTGGCCCGTGAGGCCCTACTCAGCTTCGTGAACTCCCATTGCTGTTACAGCAGTGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS TCA 72 bp TCTGTGATGGGGATCAGCTCGATGGTCTGGCGCTGCTaGAGGATGCGAGCACGGGAAGCCAGCATGGTACTG +
Preference number: 6 (lower is better)
Translates to: SVMGISSMVWRC*RMRAREASMVL
Trigger: CAGTACCATGCTGGCTTCCCGTGCTCGCATCCTTCAGCAGCGCCAGACCATCGAGCTGATCCCCATCACAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238755.2
CDS GCA 72 bp GCACCTGGACCTTCATATCCCAAAGCCTGGGGGAGGTaGCTCTCTGTGGTCCGTCCACCGAGTGGTTGGTTA +
Preference number: 6 (lower is better)
Translates to: APGPSYPKAWGR*LSVVRPPSGWL
Trigger: TAACCAACCACTCGGTGGACGGACCACAGAGAGGCACCTCCCCCAGGCTTTGGGATATGAAGGTCCAGGTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS GCA 72 bp TGGGGATCAGCTCGATGGTCTGGCGCTGCTGAAGGATaGGAGCACGGGAAGCCAGCATGGTACTGTGTTCCT +
Preference number: 6 (lower is better)
Translates to: WGSARWSGAAEG*EHGKPAWYCVP
Trigger: AGGAACACAGTACCATGCTGGCTTCCCGTGCTCGCATCCTTCAGCAGCGCCAGACCATCGAGCTGATCCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238755.2
CDS CCA 72 bp CCTGCCTTTCACGCCCTTGAAGAAGCCAGTCATAGCTaGGCAACCCCTCCAGGAGCTCATCAGGGGGCAACA +
Preference number: 6 (lower is better)
Translates to: PAFHALEEASHS*ATPPGAHQGAT
Trigger: TGTTGCCCCCTGATGAGCTCCTGGAGGGGTTGCCCAGCTATGACTGGCTTCTTCAAGGGCGTGAAAGGCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS CCA 72 bp GGACAAAGTGCTCCAGCTTCCTCTCCCCCTTGCAGGTaGCGCATGTCTTGTTGCCTCTCCCAGAGCACGTAC +
Preference number: 6 (lower is better)
Translates to: GQSAPASSPPCR*RMSCCLSQSTY
Trigger: GTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCTGGAGCACTTTGTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS CAA 72 bp CTCCAAGGGCGGGAAGAAGACCTGCCTTTCACGCCCTaGAAGAAGCCAGTCATAGCTGGGCAACCCCTCCAG +
Preference number: 6 (lower is better)
Translates to: LQGREEDLPFTP*KKPVIAGQPLQ
Trigger: CTGGAGGGGTTGCCCAGCTATGACTGGCTTCTTCAAGGGCGTGAAAGGCAGGTCTTCTTCCCGCCCTTGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS CAA 72 bp ACCAGCTGGACAAAGTGCTCCAGCTTCCTCTCCCCCTaGCAGGTGGCGCATGTCTTGTTGCCTCTCCCAGAG +
Preference number: 6 (lower is better)
Translates to: TSWTKCSSFLSP*QVAHVLLPLPE
Trigger: CTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCTGGAGCACTTTGTCCAGCTGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS CAA 90 bp CACATGATGACCAGCTGGACAAAGTGCTCCAGCTTCCTCTCCCCCTaGCAGGTGGCGCATGTCTTGTTGCCTCTCCCAGAGCACGTACTG +
Preference number: 6 (lower is better)
Translates to: HMMTSWTKCSSFLSP*QVAHVLLPLPEHVL
Trigger: CAGTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCTGGAGCACTTTGTCCAGCTGGTCATCATGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS GCA 72 bp GAGCACGGGAAGCCAGCATGGTACTGTGTTCCTCAATaGCCCTCTGGGAGGCCAAAGAGATGTCTTGCAGGG +
Preference number: 6 (lower is better)
Translates to: EHGKPAWYCVPQ*PSGRPKRCLAG
Trigger: CCCTGCAAGACATCTCTTTGGCCTCCCAGAGGGGCATTGAGGAACACAGTACCATGCTGGCTTCCCGTGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS CAA 90 bp CCCGTGGCATTTGTGACATTCCTTGACCAGGGAGGAGTGGGGCACTaGGAGCTTTCTGGTGTCTTCCTGAAACATCGGAGGCACCTGGAC +
Preference number: 6 (lower is better)
Translates to: PVAFVTFLDQGGVGH*ELSGVFLKHRRHLD
Trigger: GTCCAGGTGCCTCCGATGTTTCAGGAAGACACCAGAAAGCTCCAAGTGCCCCACTCCTCCCTGGTCAAGGAATGTCACAAATGCCACGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS CCA 72 bp CTTCATATCCCAAAGCCTGGGGGAGGTGCCTCTCTGTaGTCCGTCCACCGAGTGGTTGGTTACAGGCTGAAA +
Preference number: 6 (lower is better)
Translates to: LHIPKPGGGASL*SVHRVVGYRLK
Trigger: TTTCAGCCTGTAACCAACCACTCGGTGGACGGACCACAGAGAGGCACCTCCCCCAGGCTTTGGGATATGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS TCA 72 bp CTCTGTGGTCCGTCCACCGAGTGGTTGGTTACAGGCTaGAATGTCCACTCGCTGACTCTGGATTCGCTGAAG +
Preference number: 6 (lower is better)
Translates to: LCGPSTEWLVTG*NVHSLTLDSLK
Trigger: CTTCAGCGAATCCAGAGTCAGCGAGTGGACATTTCAGCCTGTAACCAACCACTCGGTGGACGGACCACAGAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS CAA 72 bp TTCGCTGAAGGTCTCCAGACGATACCTGCAGAGGGTTaGCTGCCTCAGCTCCTGAATGATGAGGTTGCCAGC +
Preference number: 6 (lower is better)
Translates to: FAEGLQTIPAEG*LPQLLNDEVAS
Trigger: GCTGGCAACCTCATCATTCAGGAGCTGAGGCAGCAAACCCTCTGCAGGTATCGTCTGGAGACCTTCAGCGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS GCA 72 bp CTGCCTCAGCTCCTGAATGATGAGGTTGCCAGCAGCTaGACTGCTGTAACAGCAATGGGAGTTCACGAAGCT +
Preference number: 6 (lower is better)
Translates to: LPQLLNDEVASS*TAVTAMGVHEA
Trigger: AGCTTCGTGAACTCCCATTGCTGTTACAGCAGTGCAGCTGCTGGCAACCTCATCATTCAGGAGCTGAGGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS GCA 72 bp GCTCAGGGTAGTCAGCCACGTACACCTGGTGGTCAGTaGCATAGATGTAGTAGACAGAAGTCTTCCCTTGGT +
Preference number: 6 (lower is better)
Translates to: AQGSQPRTPGGQ*HRCSRQKSSLG
Trigger: ACCAAGGGAAGACTTCTGTCTACTACATCTATGGCACTGACCACCAGGTGTACGTGGCTGACTACCCTGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238755.2
CDS CAA 72 bp TTTGTGACATTCCTTGACCAGGGAGGAGTGGGGCACTaGGAGCTTTCTGGTGTCTTCCTGAAACATCGGAGG +
Preference number: 6 (lower is better)
Translates to: FVTFLDQGGVGH*ELSGVFLKHRR
Trigger: CCTCCGATGTTTCAGGAAGACACCAGAAAGCTCCAAGTGCCCCACTCCTCCCTGGTCAAGGAATGTCACAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060847.6
ENSMUST00000238755.2
CDS TCA 72 bp CAGAAGTCTTCCCTTGGTACCAGTAATGAACTTCTGTaGTGGGGATCAGCTCGATGGTCTGGCGCTGCTGAA +
Preference number: 6 (lower is better)
Translates to: QKSSLGTSNELL*WGSARWSGAAE
Trigger: TTCAGCAGCGCCAGACCATCGAGCTGATCCCCATCACAGAAGTTCATTACTGGTACCAAGGGAAGACTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238755.2
CDS CAA 90 bp CACCTGGTGGTCAGTGCCATAGATGTAGTAGACAGAAGTCTTCCCTaGGTACCAGTAATGAACTTCTGTGATGGGGATCAGCTCGATGGT +
Preference number: 6 (lower is better)
Translates to: HLVVSAIDVVDRSLP*VPVMNFCDGDQLDG
Trigger: ACCATCGAGCTGATCCCCATCACAGAAGTTCATTACTGGTACCAAGGGAAGACTTCTGTCTACTACATCTATGGCACTGACCACCAGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238755.2