Pregenerated sensors for SSU2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034387Ensembl transcript IDs: ENSMUST00000060847.6, ENSMUST00000238755.2
Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
---|---|---|
3UTR GCA 90 bp | ATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGTaGCCACCACACATCAGAAACCCTTCCCTATGTCTTCTGTATATT | + |
Preference number: 1 (lower is better) Translates to: MACTDSGLQGFPSTV*PPHIRNPSLCLLYI Trigger: AATATACAGAAGACATAGGGAAGGGTTTCTGATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
3UTR CCA 90 bp | CCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGATGTGGTaGCTTTACCAAGTGCCTGGCACCAACATACCATCAAGCTGCCAA | + |
Preference number: 1 (lower is better) Translates to: PSEEAVGQMSEFKMW*LYQVPGTNIPSSCQ Trigger: TTGGCAGCTTGATGGTATGTTGGTGCCAGGCACTTGGTAAAGCCACCACATCTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
3UTR CCA 90 bp | CATCCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGATGTaGTGGCTTTACCAAGTGCCTGGCACCAACATACCATCAAGCTGC | + |
Preference number: 1 (lower is better) Translates to: HPSEEAVGQMSEFKM*WLYQVPGTNIPSSC Trigger: GCAGCTTGATGGTATGTTGGTGCCAGGCACTTGGTAAAGCCACCACATCTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
3UTR CCA 90 bp | TCAGAAACCCTTCCCTATGTCTTCTGTATATTCTCCAAAGGCAGCTaGCTTCACAGGCATCCCTCAGAGGAAGCTGTGGGGCAGATGAGT | + |
Preference number: 1 (lower is better) Translates to: SETLPYVFCIFSKGS*LHRHPSEEAVGQMS Trigger: ACTCATCTGCCCCACAGCTTCCTCTGAGGGATGCCTGTGAAGCCAGCTGCCTTTGGAGAATATACAGAAGACATAGGGAAGGGTTTCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
3UTR GCA 90 bp | ATGTGGTGGCTTTACCAAGTGCCTGGCACCAACATACCATCAAGCTaGCAAAATTCTTCAGCATTCCTTGGAACTCAAGTCCAAGGTCAT | + |
Preference number: 1 (lower is better) Translates to: MWWLYQVPGTNIPSS*QNSSAFLGTQVQGH Trigger: ATGACCTTGGACTTGAGTTCCAAGGAATGCTGAAGAATTTTGGCAGCTTGATGGTATGTTGGTGCCAGGCACTTGGTAAAGCCACCACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
3UTR-3UTR TCA 90 bp | CCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATGTGGGGCAGATGAGTaGATTCAAGATGTGGTGGCT | + |
Preference number: 2 (lower is better) Translates to: PAPTQGSRASHLLCAHHTCGADE*IQDVVA Trigger: AGCCACCACATCTTGAATTCACTCATCTGCCCCACA...TGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
3UTR-3UTR GCA 90 bp | CTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATAACATACCATCAAGCTaGCAAAATTCTTCAGCATTC | + |
Preference number: 2 (lower is better) Translates to: LHRLRAPGLPIYCVPTTHNIPSS*QNSSAF Trigger: GAATGCTGAAGAATTTTGGCAGCTTGATGGTATGTT...ATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
3UTR TCA 72 bp | TTCACAGGCATCCCTCAGAGGAAGCTGTGGGGCAGATaGGTGAATTCAAGATGTGGTGGCTTTACCAAGTGC | + |
Preference number: 3 (lower is better) Translates to: FTGIPQRKLWGR*VNSRCGGFTKC Trigger: GCACTTGGTAAAGCCACCACATCTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGGATGCCTGTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
3UTR-3UTR CAA 90 bp | TTTGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGATTCTTCAGCATTCCTaGGAACTCAAGTCCAAGGTC | + |
Preference number: 3 (lower is better) Translates to: FVLMACTDSGLQGFPSTVILQHS*ELKSKV Trigger: GACCTTGGACTTGAGTTCCAAGGAATGCTGAAGAAT...CACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
3UTR GCA 72 bp | CTTTACCAAGTGCCTGGCACCAACATACCATCAAGCTaGCAAAATTCTTCAGCATTCCTTGGAACTCAAGTC | + |
Preference number: 3 (lower is better) Translates to: LYQVPGTNIPSS*QNSSAFLGTQV Trigger: GACTTGAGTTCCAAGGAATGCTGAAGAATTTTGGCAGCTTGATGGTATGTTGGTGCCAGGCACTTGGTAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR GCA 90 bp | GGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATCAGAAACCCTTCCTCCCAGAGCACGTACTaGACCTGCGTCGGCCAGAGC | + |
Preference number: 4 (lower is better) Translates to: GLQGFPSTVCPPHIRNPSSQSTY*TCVGQS Trigger: GCTCTGGCCGACGCAGGTGCAGTACGTGCTCTGGGA...GGAAGGGTTTCTGATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR CCA 90 bp | TTTGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGCAACACGCAGGCTCCTaGGACCTCCCCAGGGCCTCC | + |
Preference number: 4 (lower is better) Translates to: FVLMACTDSGLQGFPSTVQHAGS*DLPRAS Trigger: GGAGGCCCTGGGGAGGTCCCAGGAGCCTGCGTGTTG...CACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR CCA 90 bp | CTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATGAGGAGTGGGGCACTTaGAGCTTTCTGGTGTCTTCC | + |
Preference number: 4 (lower is better) Translates to: LHRLRAPGLPIYCVPTTHEEWGT*SFLVSS Trigger: GGAAGACACCAGAAAGCTCCAAGTGCCCCACTCCTC...ATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR TCA 90 bp | CTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATTGGCATTCTCATCCCTaGAGAGGTTTTCCCCTCTGG | + |
Preference number: 4 (lower is better) Translates to: LHRLRAPGLPIYCVPTTHWHSHP*RGFPLW Trigger: CCAGAGGGGAAAACCTCTTCAGGGATGAGAATGCCA...ATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR GCA 90 bp | TTTTGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTCCCCATGGCAGCCGCTaGACTTGTAGCGACCACGCC | + |
Preference number: 4 (lower is better) Translates to: FCFNGLHRLRAPGLPIYCPHGSR*TCSDHA Trigger: GGCGTGGTCGCTACAAGTGCAGCGGCTGCCATGGGG...ACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACAAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR GCA 90 bp | TGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGTGTGGCATCTCCGGGGCTaGTTGGCTTTGCGCTTGGTG | + |
Preference number: 4 (lower is better) Translates to: CFNGLHRLRAPGLPIYCVWHLRG*LALRLV Trigger: CACCAAGCGCAAAGCCAAGCAGCCCCGGAGATGCCA...CACACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR CCA 90 bp | AGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATCAGAAACCCTTCTCTCCCCCTTGCAGGTaGCGCATGTCTTGTTGCCTC | + |
Preference number: 4 (lower is better) Translates to: RAPGLPIYCVPTTHQKPFSPPCR*RMSCCL Trigger: GAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGA...GAAGGGTTTCTGATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR CCA 90 bp | TCAGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATCAGAAACCCTTTGACCAGGGAGGAGTaGGGCACTTGGAGCTTTCTG | + |
Preference number: 4 (lower is better) Translates to: SGLQGFPSTVCPPHIRNPLTREE*GTWSFL Trigger: CAGAAAGCTCCAAGTGCCCCACTCCTCCCTGGTCAA...AGGGTTTCTGATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR CCA 90 bp | TGGCTTCACAGGCATCCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGATCTCCGGGGCTGCTTaGCTTTGCGCTTGGTGCCAC | + |
Preference number: 4 (lower is better) Translates to: WLHRHPSEEAVGQMSEFKISGAA*LCAWCH Trigger: GTGGCACCAAGCGCAAAGCCAAGCAGCCCCGGAGAT...CTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGGATGCCTGTGAAGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR GCA 90 bp | TGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGTGGAGGTTGCCAGCAGCTaGACTGCTGTAACAGCAATG | + |
Preference number: 4 (lower is better) Translates to: CFNGLHRLRAPGLPIYCVEVASS*TAVTAM Trigger: CATTGCTGTTACAGCAGTGCAGCTGCTGGCAACCTC...CACACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR GCA 90 bp | CCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGATGTGGTGGCTTTACACCAGCTGGACAAAGTaGTCCAGCTTCCTCTCCCCC | + |
Preference number: 4 (lower is better) Translates to: PSEEAVGQMSEFKMWWLYTSWTK*SSFLSP Trigger: GGGGGAGAGGAAGCTGGAGCACTTTGTCCAGCTGGT...GTAAAGCCACCACATCTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR GCA 90 bp | TTTGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGACATCTGCTGAAGGATaGGAGCACGGGAAGCCAGCA | + |
Preference number: 4 (lower is better) Translates to: FVLMACTDSGLQGFPSTVTSAEG*EHGKPA Trigger: TGCTGGCTTCCCGTGCTCGCATCCTTCAGCAGATGT...CACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR CCA 90 bp | TTTTGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGAAGCCAGTCATAGCTaGGCAACCCCTCCAGGAGCT | + |
Preference number: 4 (lower is better) Translates to: FCFNGLHRLRAPGLPIYCEASHS*ATPPGA Trigger: AGCTCCTGGAGGGGTTGCCCAGCTATGACTGGCTTC...ACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACAAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR CCA 90 bp | CAGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATCAGAAACCCTTCACATGATGACCAGCTaGACAAAGTGCTCCAGCTTC | + |
Preference number: 4 (lower is better) Translates to: QGSRASHLLCAHHTSETLHMMTS*TKCSSF Trigger: GAAGCTGGAGCACTTTGTCCAGCTGGTCATCATGTG...AAGGGTTTCTGATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR CCA 90 bp | CTTCACAGGCATCCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGATGAGCTCCTTGGGGCAGTaGAGGTGGTGTGGGGACATA | + |
Preference number: 4 (lower is better) Translates to: LHRHPSEEAVGQMSEFKMSSLGQ*RWCGDI Trigger: TATGTCCCCACACCACCTCCACTGCCCCAAGGAGCT...CATCTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGGATGCCTGTGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR TCA 90 bp | CCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGATGTGGTGGCTTTACTCTCAGCCTCAAAGCTaGGGTCAGCCATGCTGTCCT | + |
Preference number: 4 (lower is better) Translates to: PSEEAVGQMSEFKMWWLYSQPQS*GQPCCP Trigger: AGGACAGCATGGCTGACCTCAGCTTTGAGGCTGAGA...GTAAAGCCACCACATCTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR TCA 90 bp | TGGCTTCACAGGCATCCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGATTTGTGACATTCCTTaGCCAGGGAGGAGTGGGGCA | + |
Preference number: 4 (lower is better) Translates to: WLHRHPSEEAVGQMSEFKICDIP*PGRSGA Trigger: TGCCCCACTCCTCCCTGGTCAAGGAATGTCACAAAT...CTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGGATGCCTGTGAAGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR GCA 90 bp | TGGCTTCACAGGCATCCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGTGCCAGCAGCTGCACTaGTGTAACAGCAATGGGAGT | + |
Preference number: 4 (lower is better) Translates to: WLHRHPSEEAVGQMSEFKCQQLH*CNSNGS Trigger: ACTCCCATTGCTGTTACAGCAGTGCAGCTGCTGGCA...CTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGGATGCCTGTGAAGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR GCA 90 bp | TTTTGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTTACTGTGTTCCTCAATaGCCCTCTGGGAGGCCAAAG | + |
Preference number: 4 (lower is better) Translates to: FCFNGLHRLRAPGLPIYCYCVPQ*PSGRPK Trigger: CTTTGGCCTCCCAGAGGGGCATTGAGGAACACAGTA...ACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR CCA 90 bp | CCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGATGTGGTGGCTTTACTTGGGGCAGTGGAGGTaGTGTGGGGACATAAACTCA | + |
Preference number: 4 (lower is better) Translates to: PSEEAVGQMSEFKMWWLYLGQWR*CGDINS Trigger: TGAGTTTATGTCCCCACACCACCTCCACTGCCCCAA...GTAAAGCCACCACATCTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR CCA 90 bp | GTGGCTTTACCAAGTGCCTGGCACCAACATACCATCAAGCTGCCAAAATTCTTCTTTCCCCTCTGGCTTTaGCAAGCAGCTCCTTGGGGC | + |
Preference number: 4 (lower is better) Translates to: VALPSAWHQHTIKLPKFFFPLWL*QAAPWG Trigger: GCCCCAAGGAGCTGCTTGCCAAAGCCAGAGGGGAAA...GAAGAATTTTGGCAGCTTGATGGTATGTTGGTGCCAGGCACTTGGTAAAGCCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR GCA 90 bp | TACCATCAAGCTGCCAAAATTCTTCAGCATTCCTTGGAACTCAAGTCCAAGGTCATGAACACCTCACCATaGCAGCCCCATGGCAGCCGC | + |
Preference number: 4 (lower is better) Translates to: YHQAAKILQHSLELKSKVMNTSP*QPHGSR Trigger: GCGGCTGCCATGGGGCTGGCATGGTGAGGTGTTCAT...GACCTTGGACTTGAGTTCCAAGGAATGCTGAAGAATTTTGGCAGCTTGATGGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR TCA 90 bp | CAAGCTGCCAAAATTCTTCAGCATTCCTTGGAACTCAAGTCCAAGGTCATCATGCGCCCGTGGCATTTGTaGCATTCCTTGACCAGGGAG | + |
Preference number: 4 (lower is better) Translates to: QAAKILQHSLELKSKVIMRPWHL*HSLTRE Trigger: CTCCCTGGTCAAGGAATGTCACAAATGCCACGGGCG...CATGATGACCTTGGACTTGAGTTCCAAGGAATGCTGAAGAATTTTGGCAGCTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR GCA 90 bp | GATTTTGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGCCAAAGAGATGTCTTaGAGGGGGAAATCCACAATG | + |
Preference number: 4 (lower is better) Translates to: DFVLMACTDSGLQGFPSTAKEMS*RGKSTM Trigger: CATTGTGGATTTCCCCCTGCAAGACATCTCTTTGGC...AGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACAAAATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR CCA 90 bp | GTGGCTTTACCAAGTGCCTGGCACCAACATACCATCAAGCTGCCAAAATTCTTCAGAGGTTTTCCCCTCTaGCTTTGGCAAGCAGCTCCT | + |
Preference number: 4 (lower is better) Translates to: VALPSAWHQHTIKLPKFFRGFPL*LWQAAP Trigger: AGGAGCTGCTTGCCAAAGCCAGAGGGGAAAACCTCT...GAAGAATTTTGGCAGCTTGATGGTATGTTGGTGCCAGGCACTTGGTAAAGCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR CCA 90 bp | ATGTGGTGGCTTTACCAAGTGCCTGGCACCAACATACCATCAAGCTGCCAAAATTCCTCAATGCCCCTCTaGGAGGCCAAAGAGATGTCT | + |
Preference number: 4 (lower is better) Translates to: MWWLYQVPGTNIPSSCQNSSMPL*EAKEMS Trigger: AGACATCTCTTTGGCCTCCCAGAGGGGCATTGAGGA...ATTTTGGCAGCTTGATGGTATGTTGGTGCCAGGCACTTGGTAAAGCCACCACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR CCA 90 bp | ATGTGGTGGCTTTACCAAGTGCCTGGCACCAACATACCATCAAGCTGCCAAAATGCAGTGGAGGTGGTGTaGGGACATAAACTCAAACAG | + |
Preference number: 4 (lower is better) Translates to: MWWLYQVPGTNIPSSCQNAVEVV*GHKLKQ Trigger: CTGTTTGAGTTTATGTCCCCACACCACCTCCACTGC...ATTTTGGCAGCTTGATGGTATGTTGGTGCCAGGCACTTGGTAAAGCCACCACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR TCA 90 bp | TCTACTGTGTGCCCACCACACATCAGAAACCCTTCCCTATGTCTTCTGTATATTTTTCTGGTGTCTTCCTaGAACATCGGAGGCACCTGG | + |
Preference number: 4 (lower is better) Translates to: STVCPPHIRNPSLCLLYIFLVSS*NIGGTW Trigger: CCAGGTGCCTCCGATGTTTCAGGAAGACACCAGAAA...AATATACAGAAGACATAGGGAAGGGTTTCTGATGTGTGGTGGGCACACAGTAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR GCA 90 bp | TACCATCAAGCTGCCAAAATTCTTCAGCATTCCTTGGAACTCAAGTCCAAGGTCACAGGGACTCTGCTGTaGTCCAGGACTGAAGACCAA | + |
Preference number: 4 (lower is better) Translates to: YHQAAKILQHSLELKSKVTGTLL*SRTEDQ Trigger: TTGGTCTTCAGTCCTGGAGCACAGCAGAGTCCCTGT...GACCTTGGACTTGAGTTCCAAGGAATGCTGAAGAATTTTGGCAGCTTGATGGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS GCA 90 bp | AGGGCCTCACGGGCCACCTCCTCGGTCACCACAGGGACTCTGCTGTaGTCCAGGACTGAAGACCAACACGCAGGCTCCTGGGACCTCCCC | + |
Preference number: 5 (lower is better) Translates to: RASRATSSVTTGTLL*SRTEDQHAGSWDLP Trigger: GGGGAGGTCCCAGGAGCCTGCGTGTTGGTCTTCAGTCCTGGAGCACAGCAGAGTCCCTGTGGTGACCGAGGAGGTGGCCCGTGAGGCCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS TCA 90 bp | GGCCACCTCCTCGGTCACCACAGGGACTCTGCTGTGCTCCAGGACTaGAGACCAACACGCAGGCTCCTGGGACCTCCCCAGGGCCTCCAA | + |
Preference number: 5 (lower is better) Translates to: GHLLGHHRDSAVLQD*RPTRRLLGPPQGLQ Trigger: TTGGAGGCCCTGGGGAGGTCCCAGGAGCCTGCGTGTTGGTCTTCAGTCCTGGAGCACAGCAGAGTCCCTGTGGTGACCGAGGAGGTGGCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS TCA 90 bp | ACGGGCCACCTCCTCGGTCACCACAGGGACTCTGTGCTCCAGGACTaGAGACCAACACGCAGGCTCCTGGGACCTCCCCAGGGCCTCCAA | + |
Preference number: 5 (lower is better) Translates to: TGHLLGHHRDSVLQD*RPTRRLLGPPQGLQ Trigger: TTGGAGGCCCTGGGGAGGTCCCAGGAGCCTGCGTGTTGGTCTTCAGTCCTGGAGCACAGAGTCCCTGTGGTGACCGAGGAGGTGGCCCGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238755.2 |
||
CDS GCA 90 bp | AGTAGGGCCTCACGGGCCACCTCCTCGGTCACCACAGGGACTCTGTaGTCCAGGACTGAAGACCAACACGCAGGCTCCTGGGACCTCCCC | + |
Preference number: 5 (lower is better) Translates to: SRASRATSSVTTGTL*SRTEDQHAGSWDLP Trigger: GGGGAGGTCCCAGGAGCCTGCGTGTTGGTCTTCAGTCCTGGAGCACAGAGTCCCTGTGGTGACCGAGGAGGTGGCCCGTGAGGCCCTACT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238755.2 |
||
CDS GCA 90 bp | CACCTGCGTCGGCCAGAGCCAGAACACAGGTGGCATCTCCGGGGCTaGTTGGCTTTGCGCTTGGTGCCACTGCAGGATGAACACCTCACC | + |
Preference number: 5 (lower is better) Translates to: HLRRPEPEHRWHLRG*LALRLVPLQDEHLT Trigger: GGTGAGGTGTTCATCCTGCAGTGGCACCAAGCGCAAAGCCAAGCAGCCCCGGAGATGCCACCTGTGTTCTGGCTCTGGCCGACGCAGGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS GCA 90 bp | CCTTGCAGGTGGCGCATGTCTTGTTGCCTCTCCCAGAGCACGTACTaGACCTGCGTCGGCCAGAGCCAGAACACAGGTGGCATCTCCGGG | + |
Preference number: 5 (lower is better) Translates to: PCRWRMSCCLSQSTY*TCVGQSQNTGGISG Trigger: CCCGGAGATGCCACCTGTGTTCTGGCTCTGGCCGACGCAGGTGCAGTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS GCA 90 bp | AGTGCTCCAGCTTCCTCTCCCCCTTGCAGGTGGCGCATGTCTTGTTaGCTCTCCCAGAGCACGTACTGCACCTGCGTCGGCCAGAGCCAG | + |
Preference number: 5 (lower is better) Translates to: SAPASSPPCRWRMSC*LSQSTYCTCVGQSQ Trigger: CTGGCTCTGGCCGACGCAGGTGCAGTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCTGGAGCACT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS GCA 90 bp | CAGAACACAGGTGGCATCTCCGGGGCTGCTTGGCTTTGCGCTTGGTaGCACTGCAGGATGAACACCTCACCATGCCAGCCCCATGGCAGC | + |
Preference number: 5 (lower is better) Translates to: QNTGGISGAAWLCAW*HCRMNTSPCQPHGS Trigger: GCTGCCATGGGGCTGGCATGGTGAGGTGTTCATCCTGCAGTGGCACCAAGCGCAAAGCCAAGCAGCCCCGGAGATGCCACCTGTGTTCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS CCA 90 bp | AGCCAGAACACAGGTGGCATCTCCGGGGCTGCTTGGCTTTGCGCTTaGTGCCACTGCAGGATGAACACCTCACCATGCCAGCCCCATGGC | + |
Preference number: 5 (lower is better) Translates to: SQNTGGISGAAWLCA*CHCRMNTSPCQPHG Trigger: GCCATGGGGCTGGCATGGTGAGGTGTTCATCCTGCAGTGGCACCAAGCGCAAAGCCAAGCAGCCCCGGAGATGCCACCTGTGTTCTGGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS CCA 90 bp | TGCGTCGGCCAGAGCCAGAACACAGGTGGCATCTCCGGGGCTGCTTaGCTTTGCGCTTGGTGCCACTGCAGGATGAACACCTCACCATGC | + |
Preference number: 5 (lower is better) Translates to: CVGQSQNTGGISGAA*LCAWCHCRMNTSPC Trigger: GCATGGTGAGGTGTTCATCCTGCAGTGGCACCAAGCGCAAAGCCAAGCAGCCCCGGAGATGCCACCTGTGTTCTGGCTCTGGCCGACGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS TCA 90 bp | TGCCAGCAGCTGCACTGCTGTAACAGCAATGGGAGTTCACGAAGCTaGGTAGGGCCTCACGGGCCACCTCCTCGGTCACCACAGGGACTC | + |
Preference number: 5 (lower is better) Translates to: CQQLHCCNSNGSSRS*VGPHGPPPRSPQGL Trigger: GAGTCCCTGTGGTGACCGAGGAGGTGGCCCGTGAGGCCCTACTCAGCTTCGTGAACTCCCATTGCTGTTACAGCAGTGCAGCTGCTGGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS-3UTR CAA 90 bp | AGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATCAGAAACCCTTCCATCTCCGGGGCTGCTaGGCTTTGCGCTTGGTGCCA | + |
Preference number: 5 (lower is better) Translates to: RAPGLPIYCVPTTHQKPFHLRGC*ALRLVP Trigger: TGGCACCAAGCGCAAAGCCAAGCAGCCCCGGAGATG...GAAGGGTTTCTGATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS GCA 90 bp | ACATCGGAGGCACCTGGACCTTCATATCCCAAAGCCTGGGGGAGGTaGCTCTCTGTGGTCCGTCCACCGAGTGGTTGGTTACAGGCTGAA | + |
Preference number: 5 (lower is better) Translates to: TSEAPGPSYPKAWGR*LSVVRPPSGWLQAE Trigger: TTCAGCCTGTAACCAACCACTCGGTGGACGGACCACAGAGAGGCACCTCCCCCAGGCTTTGGGATATGAAGGTCCAGGTGCCTCCGATGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS CCA 90 bp | CGATGGTCTGGCGCTGCTGAAGGATGCGAGCACGGGAAGCCAGCATaGTACTGTGTTCCTCAATGCCCCTCTGGGAGGCCAAAGAGATGT | + |
Preference number: 5 (lower is better) Translates to: RWSGAAEGCEHGKPA*YCVPQCPSGRPKRC Trigger: ACATCTCTTTGGCCTCCCAGAGGGGCATTGAGGAACACAGTACCATGCTGGCTTCCCGTGCTCGCATCCTTCAGCAGCGCCAGACCATCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238755.2 |
||
CDS CCA 90 bp | GGAAGAAGACCTGCCTTTCACGCCCTTGAAGAAGCCAGTCATAGCTaGGCAACCCCTCCAGGAGCTCATCAGGGGGCAACACAGGACTCT | + |
Preference number: 5 (lower is better) Translates to: GRRPAFHALEEASHS*ATPPGAHQGATQDS Trigger: AGAGTCCTGTGTTGCCCCCTGATGAGCTCCTGGAGGGGTTGCCCAGCTATGACTGGCTTCTTCAAGGGCGTGAAAGGCAGGTCTTCTTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS CCA 90 bp | CACCTGGACCTTCATATCCCAAAGCCTGGGGGAGGTGCCTCTCTGTaGTCCGTCCACCGAGTGGTTGGTTACAGGCTGAAATGTCCACTC | + |
Preference number: 5 (lower is better) Translates to: HLDLHIPKPGGGASL*SVHRVVGYRLKCPL Trigger: GAGTGGACATTTCAGCCTGTAACCAACCACTCGGTGGACGGACCACAGAGAGGCACCTCCCCCAGGCTTTGGGATATGAAGGTCCAGGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS CCA 90 bp | CTTCCTGAAACATCGGAGGCACCTGGACCTTCATATCCCAAAGCCTaGGGGAGGTGCCTCTCTGTGGTCCGTCCACCGAGTGGTTGGTTA | + |
Preference number: 5 (lower is better) Translates to: LPETSEAPGPSYPKA*GRCLSVVRPPSGWL Trigger: TAACCAACCACTCGGTGGACGGACCACAGAGAGGCACCTCCCCCAGGCTTTGGGATATGAAGGTCCAGGTGCCTCCGATGTTTCAGGAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS-3UTR CAA 90 bp | AGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATCAGAAACCCTTCTTTTCCCCTCTGGCTTaGGCAAGCAGCTCCTTGGGG | + |
Preference number: 5 (lower is better) Translates to: RAPGLPIYCVPTTHQKPFFSPLA*ASSSLG Trigger: CCCCAAGGAGCTGCTTGCCAAAGCCAGAGGGGAAAA...GAAGGGTTTCTGATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS TCA 90 bp | GAGGTGCCTCTCTGTGGTCCGTCCACCGAGTGGTTGGTTACAGGCTaGAATGTCCACTCGCTGACTCTGGATTCGCTGAAGGTCTCCAGA | + |
Preference number: 5 (lower is better) Translates to: EVPLCGPSTEWLVTG*NVHSLTLDSLKVSR Trigger: TCTGGAGACCTTCAGCGAATCCAGAGTCAGCGAGTGGACATTTCAGCCTGTAACCAACCACTCGGTGGACGGACCACAGAGAGGCACCTC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS TCA 90 bp | TTGACCAGGGAGGAGTGGGGCACTTGGAGCTTTCTGGTGTCTTCCTaGAACATCGGAGGCACCTGGACCTTCATATCCCAAAGCCTGGGG | + |
Preference number: 5 (lower is better) Translates to: LTREEWGTWSFLVSS*NIGGTWTFISQSLG Trigger: CCCCAGGCTTTGGGATATGAAGGTCCAGGTGCCTCCGATGTTTCAGGAAGACACCAGAAAGCTCCAAGTGCCCCACTCCTCCCTGGTCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS GCA 90 bp | GAAGGATGCGAGCACGGGAAGCCAGCATGGTACTGTGTTCCTCAATaGCCCTCTGGGAGGCCAAAGAGATGTCTTGCAGGGGGAAATCCA | + |
Preference number: 5 (lower is better) Translates to: EGCEHGKPAWYCVPQ*PSGRPKRCLAGGNP Trigger: TGGATTTCCCCCTGCAAGACATCTCTTTGGCCTCCCAGAGGGGCATTGAGGAACACAGTACCATGCTGGCTTCCCGTGCTCGCATCCTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS-3UTR CAA 90 bp | AGCTGGCTTCACAGGCATCCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCGGAGGAGTGGGGCACTaGGAGCTTTCTGGTGTCTTC | + |
Preference number: 5 (lower is better) Translates to: SWLHRHPSEEAVGQMSEFGGVGH*ELSGVF Trigger: GAAGACACCAGAAAGCTCCAAGTGCCCCACTCCTCC...GAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGGATGCCTGTGAAGCCAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR CAA 90 bp | CTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTGTGCCCACCACACATGGCCAAAGAGATGTCTaGCAGGGGGAAATCCACAAT | + |
Preference number: 5 (lower is better) Translates to: LHRLRAPGLPIYCVPTTHGQRDV*QGEIHN Trigger: ATTGTGGATTTCCCCCTGCAAGACATCTCTTTGGCC...ATGTGTGGTGGGCACACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR CAA 90 bp | TTTTGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTGTCAGGTGGCGCATGTCTaGTTGCCTCTCCCAGAGCAC | + |
Preference number: 5 (lower is better) Translates to: FCFNGLHRLRAPGLPIYCQVAHV*LPLPEH Trigger: GTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTG...ACAGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACAAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR CAA 90 bp | GATTTTGTTTTAATGGCCTGCACCGACTCAGGGCTCCAGGGCTTCCCATCTACTAGCTTCCTCTCCCCCTaGCAGGTGGCGCATGTCTTG | + |
Preference number: 5 (lower is better) Translates to: DFVLMACTDSGLQGFPSTSFLSP*QVAHVL Trigger: CAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCT...AGTAGATGGGAAGCCCTGGAGCCCTGAGTCGGTGCAGGCCATTAAAACAAAATC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS CCA 90 bp | AGTAGAAAAACATCTGCTGAAGGATGCGAGCACGGGAAGCCAGCATaGTACTGTGTTCCTCAATGCCCCTCTGGGAGGCCAAAGAGATGT | + |
Preference number: 5 (lower is better) Translates to: SRKTSAEGCEHGKPA*YCVPQCPSGRPKRC Trigger: ACATCTCTTTGGCCTCCCAGAGGGGCATTGAGGAACACAGTACCATGCTGGCTTCCCGTGCTCGCATCCTTCAGCAGATGTTTTTCTACT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS-3UTR CAA 90 bp | CCCTCAGAGGAAGCTGTGGGGCAGATGAGTGAATTCAAGATGTGGTGGCTTTACATACCTGCAGAGGGTTaGCTGCCTCAGCTCCTGAAT | + |
Preference number: 5 (lower is better) Translates to: PSEEAVGQMSEFKMWWLYIPAEG*LPQLLN Trigger: ATTCAGGAGCTGAGGCAGCAAACCCTCTGCAGGTAT...GTAAAGCCACCACATCTTGAATTCACTCATCTGCCCCACAGCTTCCTCTGAGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS TCA 90 bp | TGTAGTAGACAGAAGTCTTCCCTTGGTACCAGTAATGAACTTCTGTaGTGGGGATCAGCTCGATGGTCTGGCGCTGCTGAAGGATGCGAG | + |
Preference number: 5 (lower is better) Translates to: CSRQKSSLGTSNELL*WGSARWSGAAEGCE Trigger: CTCGCATCCTTCAGCAGCGCCAGACCATCGAGCTGATCCCCATCACAGAAGTTCATTACTGGTACCAAGGGAAGACTTCTGTCTACTACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238755.2 |
||
CDS-3UTR CAA 90 bp | TACCATCAAGCTGCCAAAATTCTTCAGCATTCCTTGGAACTCAAGTCCAAGGTCTTGGCAAGCAGCTCCTaGGGGCAGTGGAGGTGGTGT | + |
Preference number: 5 (lower is better) Translates to: YHQAAKILQHSLELKSKVLASSS*GQWRWC Trigger: ACACCACCTCCACTGCCCCAAGGAGCTGCTTGCCAA...GACCTTGGACTTGAGTTCCAAGGAATGCTGAAGAATTTTGGCAGCTTGATGGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS GCA 90 bp | AGCAGTATCGCTCAGGGTAGTCAGCCACGTACACCTGGTGGTCAGTaGCATAGATGTAGTAGACAGAAGTCTTCCCTTGGTACCAGTAAT | + |
Preference number: 5 (lower is better) Translates to: SSIAQGSQPRTPGGQ*HRCSRQKSSLGTSN Trigger: ATTACTGGTACCAAGGGAAGACTTCTGTCTACTACATCTATGGCACTGACCACCAGGTGTACGTGGCTGACTACCCTGAGCGATACTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238755.2 |
||
CDS-3UTR CAA 90 bp | ACCATCAAGCTGCCAAAATTCTTCAGCATTCCTTGGAACTCAAGTCCAAGGTCACTGCCTTTCACGCCCTaGAAGAAGCCAGTCATAGCT | + |
Preference number: 5 (lower is better) Translates to: TIKLPKFFSIPWNSSPRSLPFTP*KKPVIA Trigger: AGCTATGACTGGCTTCTTCAAGGGCGTGAAAGGCAG...TGACCTTGGACTTGAGTTCCAAGGAATGCTGAAGAATTTTGGCAGCTTGATGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS CCA 72 bp | CTGTGCTCCAGGACTGAAGACCAACACGCAGGCTCCTaGGACCTCCCCAGGGCCTCCAAGGGCGGGAAGAAG | + |
Preference number: 6 (lower is better) Translates to: LCSRTEDQHAGS*DLPRASKGGKK Trigger: CTTCTTCCCGCCCTTGGAGGCCCTGGGGAGGTCCCAGGAGCCTGCGTGTTGGTCTTCAGTCCTGGAGCACAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS TCA 72 bp | CTCGGTCACCACAGGGACTCTGCTGTGCTCCAGGACTaGAGACCAACACGCAGGCTCCTGGGACCTCCCCAG | + |
Preference number: 6 (lower is better) Translates to: LGHHRDSAVLQD*RPTRRLLGPPQ Trigger: CTGGGGAGGTCCCAGGAGCCTGCGTGTTGGTCTTCAGTCCTGGAGCACAGCAGAGTCCCTGTGGTGACCGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060847.6 |
||
CDS GCA 72 bp | GGTGGCATCTCCGGGGCTGCTTGGCTTTGCGCTTGGTaGCACTGCAGGATGAACACCTCACCATGCCAGCCC | + |
Preference number: 6 (lower is better) Translates to: GGISGAAWLCAW*HCRMNTSPCQP Trigger: GGGCTGGCATGGTGAGGTGTTCATCCTGCAGTGGCACCAAGCGCAAAGCCAAGCAGCCCCGGAGATGCCACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS GCA 72 bp | GCTTCCTCTCCCCCTTGCAGGTGGCGCATGTCTTGTTaGCTCTCCCAGAGCACGTACTGCACCTGCGTCGGC | + |
Preference number: 6 (lower is better) Translates to: ASSPPCRWRMSC*LSQSTYCTCVG Trigger: GCCGACGCAGGTGCAGTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS GCA 72 bp | TCACGGGCCACCTCCTCGGTCACCACAGGGACTCTGTaGTCCAGGACTGAAGACCAACACGCAGGCTCCTGG | + |
Preference number: 6 (lower is better) Translates to: SRATSSVTTGTL*SRTEDQHAGSW Trigger: CCAGGAGCCTGCGTGTTGGTCTTCAGTCCTGGAGCACAGAGTCCCTGTGGTGACCGAGGAGGTGGCCCGTGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238755.2 |
||
CDS CCA 72 bp | GTACTGCACCTGCGTCGGCCAGAGCCAGAACACAGGTaGCATCTCCGGGGCTGCTTGGCTTTGCGCTTGGTG | + |
Preference number: 6 (lower is better) Translates to: VLHLRRPEPEHR*HLRGCLALRLV Trigger: CACCAAGCGCAAAGCCAAGCAGCCCCGGAGATGCCACCTGTGTTCTGGCTCTGGCCGACGCAGGTGCAGTAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS CAA 90 bp | CCCCAGGGCCTCCAAGGGCGGGAAGAAGACCTGCCTTTCACGCCCTaGAAGAAGCCAGTCATAGCTGGGCAACCCCTCCAGGAGCTCATC | + |
Preference number: 6 (lower is better) Translates to: PQGLQGREEDLPFTP*KKPVIAGQPLQELI Trigger: GATGAGCTCCTGGAGGGGTTGCCCAGCTATGACTGGCTTCTTCAAGGGCGTGAAAGGCAGGTCTTCTTCCCGCCCTTGGAGGCCCTGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS CAA 90 bp | AAGTGCTCCAGCTTCCTCTCCCCCTTGCAGGTGGCGCATGTCTTGTaGCCTCTCCCAGAGCACGTACTGCACCTGCGTCGGCCAGAGCCA | + |
Preference number: 6 (lower is better) Translates to: KCSSFLSPLQVAHVL*PLPEHVLHLRRPEP Trigger: TGGCTCTGGCCGACGCAGGTGCAGTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCTGGAGCACTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS GCA 72 bp | ATCTCCGGGGCTGCTTGGCTTTGCGCTTGGTGCCACTaGAGGATGAACACCTCACCATGCCAGCCCCATGGC | + |
Preference number: 6 (lower is better) Translates to: ISGAAWLCAWCH*RMNTSPCQPHG Trigger: GCCATGGGGCTGGCATGGTGAGGTGTTCATCCTGCAGTGGCACCAAGCGCAAAGCCAAGCAGCCCCGGAGAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS GCA 72 bp | TGGCGCATGTCTTGTTGCCTCTCCCAGAGCACGTACTaGACCTGCGTCGGCCAGAGCCAGAACACAGGTGGC | + |
Preference number: 6 (lower is better) Translates to: WRMSCCLSQSTY*TCVGQSQNTGG Trigger: GCCACCTGTGTTCTGGCTCTGGCCGACGCAGGTGCAGTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS CAA 72 bp | AGCTTCCTCTCCCCCTTGCAGGTGGCGCATGTCTTGTaGCCTCTCCCAGAGCACGTACTGCACCTGCGTCGG | + |
Preference number: 6 (lower is better) Translates to: SFLSPLQVAHVL*PLPEHVLHLRR Trigger: CCGACGCAGGTGCAGTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS CAA 90 bp | ACAAAGTGCTCCAGCTTCCTCTCCCCCTTGCAGGTGGCGCATGTCTaGTTGCCTCTCCCAGAGCACGTACTGCACCTGCGTCGGCCAGAG | + |
Preference number: 6 (lower is better) Translates to: TKCSSFLSPLQVAHV*LPLPEHVLHLRRPE Trigger: CTCTGGCCGACGCAGGTGCAGTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCTGGAGCACTTTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS GCA 72 bp | CCAGCTGGACAAAGTGCTCCAGCTTCCTCTCCCCCTTaGAGGTGGCGCATGTCTTGTTGCCTCTCCCAGAGC | + |
Preference number: 6 (lower is better) Translates to: PAGQSAPASSPP*RWRMSCCLSQS Trigger: GCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCTGGAGCACTTTGTCCAGCTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS CAA 72 bp | TCCAGCTTCCTCTCCCCCTTGCAGGTGGCGCATGTCTaGTTGCCTCTCCCAGAGCACGTACTGCACCTGCGT | + |
Preference number: 6 (lower is better) Translates to: SSFLSPLQVAHV*LPLPEHVLHLR Trigger: ACGCAGGTGCAGTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCTGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS TCA 72 bp | CTGCACTGCTGTAACAGCAATGGGAGTTCACGAAGCTaGGTAGGGCCTCACGGGCCACCTCCTCGGTCACCA | + |
Preference number: 6 (lower is better) Translates to: LHCCNSNGSSRS*VGPHGPPPRSP Trigger: TGGTGACCGAGGAGGTGGCCCGTGAGGCCCTACTCAGCTTCGTGAACTCCCATTGCTGTTACAGCAGTGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS TCA 72 bp | TCTGTGATGGGGATCAGCTCGATGGTCTGGCGCTGCTaGAGGATGCGAGCACGGGAAGCCAGCATGGTACTG | + |
Preference number: 6 (lower is better) Translates to: SVMGISSMVWRC*RMRAREASMVL Trigger: CAGTACCATGCTGGCTTCCCGTGCTCGCATCCTTCAGCAGCGCCAGACCATCGAGCTGATCCCCATCACAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238755.2 |
||
CDS GCA 72 bp | GCACCTGGACCTTCATATCCCAAAGCCTGGGGGAGGTaGCTCTCTGTGGTCCGTCCACCGAGTGGTTGGTTA | + |
Preference number: 6 (lower is better) Translates to: APGPSYPKAWGR*LSVVRPPSGWL Trigger: TAACCAACCACTCGGTGGACGGACCACAGAGAGGCACCTCCCCCAGGCTTTGGGATATGAAGGTCCAGGTGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS GCA 72 bp | TGGGGATCAGCTCGATGGTCTGGCGCTGCTGAAGGATaGGAGCACGGGAAGCCAGCATGGTACTGTGTTCCT | + |
Preference number: 6 (lower is better) Translates to: WGSARWSGAAEG*EHGKPAWYCVP Trigger: AGGAACACAGTACCATGCTGGCTTCCCGTGCTCGCATCCTTCAGCAGCGCCAGACCATCGAGCTGATCCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238755.2 |
||
CDS CCA 72 bp | CCTGCCTTTCACGCCCTTGAAGAAGCCAGTCATAGCTaGGCAACCCCTCCAGGAGCTCATCAGGGGGCAACA | + |
Preference number: 6 (lower is better) Translates to: PAFHALEEASHS*ATPPGAHQGAT Trigger: TGTTGCCCCCTGATGAGCTCCTGGAGGGGTTGCCCAGCTATGACTGGCTTCTTCAAGGGCGTGAAAGGCAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS CCA 72 bp | GGACAAAGTGCTCCAGCTTCCTCTCCCCCTTGCAGGTaGCGCATGTCTTGTTGCCTCTCCCAGAGCACGTAC | + |
Preference number: 6 (lower is better) Translates to: GQSAPASSPPCR*RMSCCLSQSTY Trigger: GTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCTGGAGCACTTTGTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS CAA 72 bp | CTCCAAGGGCGGGAAGAAGACCTGCCTTTCACGCCCTaGAAGAAGCCAGTCATAGCTGGGCAACCCCTCCAG | + |
Preference number: 6 (lower is better) Translates to: LQGREEDLPFTP*KKPVIAGQPLQ Trigger: CTGGAGGGGTTGCCCAGCTATGACTGGCTTCTTCAAGGGCGTGAAAGGCAGGTCTTCTTCCCGCCCTTGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS CAA 72 bp | ACCAGCTGGACAAAGTGCTCCAGCTTCCTCTCCCCCTaGCAGGTGGCGCATGTCTTGTTGCCTCTCCCAGAG | + |
Preference number: 6 (lower is better) Translates to: TSWTKCSSFLSP*QVAHVLLPLPE Trigger: CTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCTGGAGCACTTTGTCCAGCTGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS CAA 90 bp | CACATGATGACCAGCTGGACAAAGTGCTCCAGCTTCCTCTCCCCCTaGCAGGTGGCGCATGTCTTGTTGCCTCTCCCAGAGCACGTACTG | + |
Preference number: 6 (lower is better) Translates to: HMMTSWTKCSSFLSP*QVAHVLLPLPEHVL Trigger: CAGTACGTGCTCTGGGAGAGGCAACAAGACATGCGCCACCTGCAAGGGGGAGAGGAAGCTGGAGCACTTTGTCCAGCTGGTCATCATGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS GCA 72 bp | GAGCACGGGAAGCCAGCATGGTACTGTGTTCCTCAATaGCCCTCTGGGAGGCCAAAGAGATGTCTTGCAGGG | + |
Preference number: 6 (lower is better) Translates to: EHGKPAWYCVPQ*PSGRPKRCLAG Trigger: CCCTGCAAGACATCTCTTTGGCCTCCCAGAGGGGCATTGAGGAACACAGTACCATGCTGGCTTCCCGTGCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS CAA 90 bp | CCCGTGGCATTTGTGACATTCCTTGACCAGGGAGGAGTGGGGCACTaGGAGCTTTCTGGTGTCTTCCTGAAACATCGGAGGCACCTGGAC | + |
Preference number: 6 (lower is better) Translates to: PVAFVTFLDQGGVGH*ELSGVFLKHRRHLD Trigger: GTCCAGGTGCCTCCGATGTTTCAGGAAGACACCAGAAAGCTCCAAGTGCCCCACTCCTCCCTGGTCAAGGAATGTCACAAATGCCACGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS CCA 72 bp | CTTCATATCCCAAAGCCTGGGGGAGGTGCCTCTCTGTaGTCCGTCCACCGAGTGGTTGGTTACAGGCTGAAA | + |
Preference number: 6 (lower is better) Translates to: LHIPKPGGGASL*SVHRVVGYRLK Trigger: TTTCAGCCTGTAACCAACCACTCGGTGGACGGACCACAGAGAGGCACCTCCCCCAGGCTTTGGGATATGAAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS TCA 72 bp | CTCTGTGGTCCGTCCACCGAGTGGTTGGTTACAGGCTaGAATGTCCACTCGCTGACTCTGGATTCGCTGAAG | + |
Preference number: 6 (lower is better) Translates to: LCGPSTEWLVTG*NVHSLTLDSLK Trigger: CTTCAGCGAATCCAGAGTCAGCGAGTGGACATTTCAGCCTGTAACCAACCACTCGGTGGACGGACCACAGAG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS CAA 72 bp | TTCGCTGAAGGTCTCCAGACGATACCTGCAGAGGGTTaGCTGCCTCAGCTCCTGAATGATGAGGTTGCCAGC | + |
Preference number: 6 (lower is better) Translates to: FAEGLQTIPAEG*LPQLLNDEVAS Trigger: GCTGGCAACCTCATCATTCAGGAGCTGAGGCAGCAAACCCTCTGCAGGTATCGTCTGGAGACCTTCAGCGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS GCA 72 bp | CTGCCTCAGCTCCTGAATGATGAGGTTGCCAGCAGCTaGACTGCTGTAACAGCAATGGGAGTTCACGAAGCT | + |
Preference number: 6 (lower is better) Translates to: LPQLLNDEVASS*TAVTAMGVHEA Trigger: AGCTTCGTGAACTCCCATTGCTGTTACAGCAGTGCAGCTGCTGGCAACCTCATCATTCAGGAGCTGAGGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS GCA 72 bp | GCTCAGGGTAGTCAGCCACGTACACCTGGTGGTCAGTaGCATAGATGTAGTAGACAGAAGTCTTCCCTTGGT | + |
Preference number: 6 (lower is better) Translates to: AQGSQPRTPGGQ*HRCSRQKSSLG Trigger: ACCAAGGGAAGACTTCTGTCTACTACATCTATGGCACTGACCACCAGGTGTACGTGGCTGACTACCCTGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238755.2 |
||
CDS CAA 72 bp | TTTGTGACATTCCTTGACCAGGGAGGAGTGGGGCACTaGGAGCTTTCTGGTGTCTTCCTGAAACATCGGAGG | + |
Preference number: 6 (lower is better) Translates to: FVTFLDQGGVGH*ELSGVFLKHRR Trigger: CCTCCGATGTTTCAGGAAGACACCAGAAAGCTCCAAGTGCCCCACTCCTCCCTGGTCAAGGAATGTCACAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060847.6 ENSMUST00000238755.2 |
||
CDS TCA 72 bp | CAGAAGTCTTCCCTTGGTACCAGTAATGAACTTCTGTaGTGGGGATCAGCTCGATGGTCTGGCGCTGCTGAA | + |
Preference number: 6 (lower is better) Translates to: QKSSLGTSNELL*WGSARWSGAAE Trigger: TTCAGCAGCGCCAGACCATCGAGCTGATCCCCATCACAGAAGTTCATTACTGGTACCAAGGGAAGACTTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238755.2 |
||
CDS CAA 90 bp | CACCTGGTGGTCAGTGCCATAGATGTAGTAGACAGAAGTCTTCCCTaGGTACCAGTAATGAACTTCTGTGATGGGGATCAGCTCGATGGT | + |
Preference number: 6 (lower is better) Translates to: HLVVSAIDVVDRSLP*VPVMNFCDGDQLDG Trigger: ACCATCGAGCTGATCCCCATCACAGAAGTTCATTACTGGTACCAAGGGAAGACTTCTGTCTACTACATCTATGGCACTGACCACCAGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238755.2 |