Pregenerated sensors for SSTR4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037014Ensembl transcript IDs: ENSMUST00000109962.4
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR-3UTR TCA 90 bp | GAGGCTCCTGGGGACAGCACACAGGCTGCTGAAAGGGCCTGGCTTAGTGAAAACCGTTTGCAGGCGAGGTaGGGGAGGGTAAAATGGTTT | + |
Preference number: 2 (lower is better) Translates to: EAPGDSTQAAERAWLSENRLQAR*GRVKWF Trigger: AAACCATTTTACCCTCCCTCACCTCGCCTGCAAACG...GTTTTCACTAAGCCAGGCCCTTTCAGCAGCCTGTGTGCTGTCCCCAGGAGCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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3UTR CCA 72 bp | ACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTaGCGCAGACCCGTTTGCAGGCGAGGTGAGGGAGGG | + |
Preference number: 3 (lower is better) Translates to: TGVVLEVAGLRE*RRPVCRRGEGG Trigger: CCCTCCCTCACCTCGCCTGCAAACGGGTCTGCGCCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR CCA 90 bp | AGGCTCCTGGGGACAGCACACAGGCTGCTGAAAGGGCCTGGCTTAGTGAAAACATGGGCCGCCGGTAGGTaGCGGCGCGCAGAGGGTGCA | + |
Preference number: 4 (lower is better) Translates to: RLLGTAHRLLKGPGLVKTWAAGR*RRAEGA Trigger: TGCACCCTCTGCGCGCCGCCACCTACCGGCGGCCCA...TGTTTTCACTAAGCCAGGCCCTTTCAGCAGCCTGTGTGCTGTCCCCAGGAGCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR TCA 90 bp | GAGGCTCCTGGGGACAGCACACAGGCTGCTGAAAGGGCCTGGCTTAGTGAAAACCTGCGATGGGCAGGGTaGCCAGCAAGGATGCTAGCC | + |
Preference number: 4 (lower is better) Translates to: EAPGDSTQAAERAWLSENLRWAG*PARMLA Trigger: GGCTAGCATCCTTGCTGGTCACCCTGCCCATCGCAG...GTTTTCACTAAGCCAGGCCCTTTCAGCAGCCTGTGTGCTGTCCCCAGGAGCCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR TCA 90 bp | AAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGCGCAGACCCGTTGAGCCCAGCTGGCGTTaGTCCCAGGGGTCCAGGTGG | + |
Preference number: 4 (lower is better) Translates to: KTGVVLEVAGLREWRRPVEPSWR*SQGSRW Trigger: CCACCTGGACCCCTGGGATCAACGCCAGCTGGGCTC...AACGGGTCTGCGCCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR TCA 90 bp | GAGGCTCCTGGGGACAGCACACAGGCTGCTGAAAGGGCCTGGCTTAGTGAAAACGTAGGATCACGAAGATaGCCAGGGCGTTTCCCACCA | + |
Preference number: 4 (lower is better) Translates to: EAPGDSTQAAERAWLSENVGSRR*PGRFPP Trigger: TGGTGGGAAACGCCCTGGTCATCTTCGTGATCCTAC...GTTTTCACTAAGCCAGGCCCTTTCAGCAGCCTGTGTGCTGTCCCCAGGAGCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR TCA 90 bp | GAGGCTCCTGGGGACAGCACACAGGCTGCTGAAAGGGCCTGGCTTAGTGAAAACCACCCCCTCTGCTTTTaGGAGCAGTGGCATAGTAGT | + |
Preference number: 4 (lower is better) Translates to: EAPGDSTQAAERAWLSENHPLCF*EQWHSS Trigger: ACTACTATGCCACTGCTCTCAAAAGCAGAGGGGGTG...GTTTTCACTAAGCCAGGCCCTTTCAGCAGCCTGTGTGCTGTCCCCAGGAGCCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR GCA 90 bp | CCTGGCTTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGGCTTGCACGGGCTCCTaGTGGCAGGGCAGAGGAGGG | + |
Preference number: 4 (lower is better) Translates to: PGLVKTGVVLEVAGLREWACTGS*WQGRGG Trigger: CCCTCCTCTGCCCTGCCAGCAGGAGCCCGTGCAAGC...CCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAAGCCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR CCA 90 bp | CCTGGCTTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGTTAGCTTGGCCACGCTaGGCCGCCGGTAGGTGGCGG | + |
Preference number: 4 (lower is better) Translates to: PGLVKTGVVLEVAGLREWLAWPR*AAGRWR Trigger: CCGCCACCTACCGGCGGCCCAGCGTGGCCAAGCTAA...CCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAAGCCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR TCA 90 bp | CCTGGCTTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGGCAGACCAGGCCGGGTaGGGCCAGTGCAGGTTGCAA | + |
Preference number: 4 (lower is better) Translates to: PGLVKTGVVLEVAGLREWADQAG*GQCRLQ Trigger: TTGCAACCTGCACTGGCCTCACCCGGCCTGGTCTGC...CCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAAGCCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR GCA 90 bp | AGGCTCCTGGGGACAGCACACAGGCTGCTGAAAGGGCCTGGCTTAGTGAAAACAAGGGCATATGCATCCTaGACCCCCTCTGCTTTTGAG | + |
Preference number: 4 (lower is better) Translates to: RLLGTAHRLLKGPGLVKTRAYAS*TPSAFE Trigger: CTCAAAAGCAGAGGGGGTGCAGGATGCATATGCCCT...TGTTTTCACTAAGCCAGGCCCTTTCAGCAGCCTGTGTGCTGTCCCCAGGAGCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR TCA 90 bp | GGGCCTGGCTTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGGCCACACTCCCAGGTTaGTTAGCTTGGCCACGCTGG | + |
Preference number: 4 (lower is better) Translates to: GPGLVKTGVVLEVAGLREATLPG*LAWPRW Trigger: CCAGCGTGGCCAAGCTAATCAACCTGGGAGTGTGGC...CTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAAGCCAGGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR CCA 90 bp | CCTGGCTTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGCGCCGAGGCCACGAATaGCACGCTGAGCATGAAGAG | + |
Preference number: 4 (lower is better) Translates to: PGLVKTGVVLEVAGLREWRRGHE*HAEHEE Trigger: CTCTTCATGCTCAGCGTGCCATTCGTGGCCTCGGCG...CCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAAGCCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR TCA 90 bp | GGGCCTGGCTTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGCATCGAGGCTGGTaGCAAACAGGTTCAGAAGCT | + |
Preference number: 4 (lower is better) Translates to: GPGLVKTGVVLEVAGLREWHRGW*QTGSEA Trigger: AGCTTCTGAACCTGTTTGTCACCAGCCTCGATGCCA...CTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAAGCCAGGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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3UTR CAA 72 bp | TTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTaGAGAGAGTGGCGCAGACCCGTTTGCAGGCGAGGT | + |
Preference number: 4 (lower is better) Translates to: LVKTGVVLEVAG*REWRRPVCRRG Trigger: ACCTCGCCTGCAAACGGGTCTGCGCCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS GCA 90 bp | AGATCACAAAGACCGCAGACCAGGCCGGGTGAGGCCAGTGCAGGTTaGAAGCCACGGCCTCGCCCCCACGAGCTGGCCTGGTGTCAGCGA | + |
Preference number: 5 (lower is better) Translates to: RSQRPQTRPGEASAG*KPRPRPHELAWCQR Trigger: TCGCTGACACCAGGCCAGCTCGTGGGGGCGAGGCCGTGGCTTGCAACCTGCACTGGCCTCACCCGGCCTGGTCTGCGGTCTTTGTGATCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS CCA 90 bp | GTGAGGCCAGTGCAGGTTGCAAGCCACGGCCTCGCCCCCACGAGCTaGCCTGGTGTCAGCGAAGACTGCGATGGGCAGGGTGACCAGCAA | + |
Preference number: 5 (lower is better) Translates to: VRPVQVASHGLAPTS*PGVSEDCDGQGDQQ Trigger: TTGCTGGTCACCCTGCCCATCGCAGTCTTCGCTGACACCAGGCCAGCTCGTGGGGGCGAGGCCGTGGCTTGCAACCTGCACTGGCCTCAC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS GCA 90 bp | TTGCACGGGCTCCTGCTGGCAGGGCAGAGGAGGGCATATGCATCCTaGACCCCCTCTGCTTTTGAGAGCAGTGGCATAGTAGTCCAGGGG | + |
Preference number: 5 (lower is better) Translates to: LHGLLLAGQRRAYAS*TPSAFESSGIVVQG Trigger: CCCCTGGACTACTATGCCACTGCTCTCAAAAGCAGAGGGGGTGCAGGATGCATATGCCCTCCTCTGCCCTGCCAGCAGGAGCCCGTGCAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS CCA 90 bp | AAAGGGACTTGCTTGCAGCCAGGTTCTGCTTGCACGGGCTCCTGCTaGCAGGGCAGAGGAGGGCATATGCATCCTGCACCCCCTCTGCTT | + |
Preference number: 5 (lower is better) Translates to: KGTCLQPGSACTGSC*QGRGGHMHPAPPLL Trigger: AAGCAGAGGGGGTGCAGGATGCATATGCCCTCCTCTGCCCTGCCAGCAGGAGCCCGTGCAAGCAGAACCTGGCTGCAAGCAAGTCCCTTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR CAA 90 bp | AGGCTCCTGGGGACAGCACACAGGCTGCTGAAAGGGCCTGGCTTAGTGAAAACAGCAGCCAGGTTCTGCTaGCACGGGCTCCTGCTGGCA | + |
Preference number: 5 (lower is better) Translates to: RLLGTAHRLLKGPGLVKTAARFC*HGLLLA Trigger: TGCCAGCAGGAGCCCGTGCAAGCAGAACCTGGCTGC...TGTTTTCACTAAGCCAGGCCCTTTCAGCAGCCTGTGTGCTGTCCCCAGGAGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS GCA 90 bp | ATTAGCACGAGCCTAGTGATCTTCTTCTCTGAGCGCCTCCGTTGTTaGCAGCCAGCCCGCAGGGCCACAGCGCGCATCTTGCCCACAATA | + |
Preference number: 5 (lower is better) Translates to: ISTSLVIFFSERLRC*QPARRATARILPTI Trigger: TATTGTGGGCAAGATGCGCGCTGTGGCCCTGCGGGCTGGCTGGCAACAACGGAGGCGCTCAGAGAAGAAGATCACTAGGCTCGTGCTAAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS GCA 90 bp | GTAGTGGTCTTGGTGAAAGGGACTTGCTTGCAGCCAGGTTCTGCTTaGACGGGCTCCTGCTGGCAGGGCAGAGGAGGGCATATGCATCCT | + |
Preference number: 5 (lower is better) Translates to: VVVLVKGTCLQPGSA*TGSCWQGRGGHMHP Trigger: AGGATGCATATGCCCTCCTCTGCCCTGCCAGCAGGAGCCCGTGCAAGCAGAACCTGGCTGCAAGCAAGTCCCTTTCACCAAGACCACTAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS GCA 90 bp | GAAAGTAGTGGTCTTGGTGAAAGGGACTTGCTTGCAGCCAGGTTCTaGTTGCACGGGCTCCTGCTGGCAGGGCAGAGGAGGGCATATGCA | + |
Preference number: 5 (lower is better) Translates to: ESSGLGERDLLAARF*LHGLLLAGQRRAYA Trigger: TGCATATGCCCTCCTCTGCCCTGCCAGCAGGAGCCCGTGCAAGCAGAACCTGGCTGCAAGCAAGTCCCTTTCACCAAGACCACTACTTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR CAA 90 bp | AAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGCGCAGACCCGTTCCCAGGTTGATTAGCTaGGCCACGCTGGGCCGCCGG | + |
Preference number: 5 (lower is better) Translates to: KTGVVLEVAGLREWRRPVPRLIS*ATLGRR Trigger: CCGGCGGCCCAGCGTGGCCAAGCTAATCAACCTGGG...AACGGGTCTGCGCCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR CAA 90 bp | AGGCTCCTGGGGACAGCACACAGGCTGCTGAAAGGGCCTGGCTTAGTGAAAACAAGCCACACTCCCAGGTaGATTAGCTTGGCCACGCTG | + |
Preference number: 5 (lower is better) Translates to: RLLGTAHRLLKGPGLVKTSHTPR*ISLATL Trigger: CAGCGTGGCCAAGCTAATCAACCTGGGAGTGTGGCT...TGTTTTCACTAAGCCAGGCCCTTTCAGCAGCCTGTGTGCTGTCCCCAGGAGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR CAA 90 bp | AGGCTCCTGGGGACAGCACACAGGCTGCTGAAAGGGCCTGGCTTAGTGAAAACACCTCAGCACCTCCAGTaGTTTCCAGGAGACAGCAGC | + |
Preference number: 5 (lower is better) Translates to: RLLGTAHRLLKGPGLVKTPQHLQ*FPGDSS Trigger: GCTGCTGTCTCCTGGAAACAACTGGAGGTGCTGAGG...TGTTTTCACTAAGCCAGGCCCTTTCAGCAGCCTGTGTGCTGTCCCCAGGAGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR CAA 90 bp | CCTGGCTTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGATGAGGGACACATGGTaGACAGTGGCATCGAGGCTG | + |
Preference number: 5 (lower is better) Translates to: PGLVKTGVVLEVAGLREWMRDTW*TVASRL Trigger: CAGCCTCGATGCCACTGTCAACCATGTGTCCCTCAT...CCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAAGCCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR CAA 90 bp | CCTGGCTTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGGTGAAAGGGACTTGCTaGCAGCCAGGTTCTGCTTGC | + |
Preference number: 5 (lower is better) Translates to: PGLVKTGVVLEVAGLREWVKGTC*QPGSAC Trigger: GCAAGCAGAACCTGGCTGCAAGCAAGTCCCTTTCAC...CCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAAGCCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS-3UTR CAA 90 bp | CCTGGCTTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGCAGAAAGTAGTGGTCTaGGTGAAAGGGACTTGCTTG | + |
Preference number: 5 (lower is better) Translates to: PGLVKTGVVLEVAGLREWQKVVV*VKGTCL Trigger: CAAGCAAGTCCCTTTCACCAAGACCACTACTTTCTG...CCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAAGCCAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS CCA 72 bp | AGCACTGCGCGACACAGCACCGCCCCGAACGGCCAGTaGCGCAGGGCAGCCGCCGAGGCCACGAATGGCACG | + |
Preference number: 6 (lower is better) Translates to: STARHSTAPNGQ*RRAAAEATNGT Trigger: CGTGCCATTCGTGGCCTCGGCGGCTGCCCTGCGCCACTGGCCGTTCGGGGCGGTGCTGTGTCGCGCAGTGCT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS GCA 72 bp | AGACCGCAGACCAGGCCGGGTGAGGCCAGTGCAGGTTaGAAGCCACGGCCTCGCCCCCACGAGCTGGCCTGG | + |
Preference number: 6 (lower is better) Translates to: RPQTRPGEASAG*KPRPRPHELAW Trigger: CCAGGCCAGCTCGTGGGGGCGAGGCCGTGGCTTGCAACCTGCACTGGCCTCACCCGGCCTGGTCTGCGGTCT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS CAA 72 bp | GCATCCTCCTCCTCCTCGTCCGGAGCCCAGCTGGCGTaGATCCCAGGGGTCCAGGTGGTGTCCTCGACCCCC | + |
Preference number: 6 (lower is better) Translates to: ASSSSSSGAQLA*IPGVQVVSSTP Trigger: GGGGGTCGAGGACACCACCTGGACCCCTGGGATCAACGCCAGCTGGGCTCCGGACGAGGAGGAGGAGGATGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS CCA 72 bp | GTGCAGGTTGCAAGCCACGGCCTCGCCCCCACGAGCTaGCCTGGTGTCAGCGAAGACTGCGATGGGCAGGGT | + |
Preference number: 6 (lower is better) Translates to: VQVASHGLAPTS*PGVSEDCDGQG Trigger: ACCCTGCCCATCGCAGTCTTCGCTGACACCAGGCCAGCTCGTGGGGGCGAGGCCGTGGCTTGCAACCTGCAC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS GCA 72 bp | AGCCTAGTGATCTTCTTCTCTGAGCGCCTCCGTTGTTaGCAGCCAGCCCGCAGGGCCACAGCGCGCATCTTG | + |
Preference number: 6 (lower is better) Translates to: SLVIFFSERLRC*QPARRATARIL Trigger: CAAGATGCGCGCTGTGGCCCTGCGGGCTGGCTGGCAACAACGGAGGCGCTCAGAGAAGAAGATCACTAGGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS GCA 72 bp | GGTCTTGGTGAAAGGGACTTGCTTGCAGCCAGGTTCTaGTTGCACGGGCTCCTGCTGGCAGGGCAGAGGAGG | + |
Preference number: 6 (lower is better) Translates to: GLGERDLLAARF*LHGLLLAGQRR Trigger: CCTCCTCTGCCCTGCCAGCAGGAGCCCGTGCAAGCAGAACCTGGCTGCAAGCAAGTCCCTTTCACCAAGACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS CAA 90 bp | GAGCAGTGGCATAGTAGTCCAGGGGCTCTTCCTCAGCACCTCCAGTaGTTTCCAGGAGACAGCAGCGCAGGCACAGAACCCGCTGGAAAG | + |
Preference number: 6 (lower is better) Translates to: EQWHSSPGALPQHLQ*FPGDSSAGTEPAGK Trigger: CTTTCCAGCGGGTTCTGTGCCTGCGCTGCTGTCTCCTGGAAACAACTGGAGGTGCTGAGGAAGAGCCCCTGGACTACTATGCCACTGCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |
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CDS GCA 72 bp | CTCCTGCTGGCAGGGCAGAGGAGGGCATATGCATCCTaGACCCCCTCTGCTTTTGAGAGCAGTGGCATAGTA | + |
Preference number: 6 (lower is better) Translates to: LLLAGQRRAYAS*TPSAFESSGIV Trigger: TACTATGCCACTGCTCTCAAAAGCAGAGGGGGTGCAGGATGCATATGCCCTCCTCTGCCCTGCCAGCAGGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109962.4 |