RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SSTR4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037014

Ensembl transcript IDs: ENSMUST00000109962.4

Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp GAGGCTCCTGGGGACAGCACACAGGCTGCTGAAAGGGCCTGGCTTAGTGAAAACCGTTTGCAGGCGAGGTaGGGGAGGGTAAAATGGTTT +
Preference number: 2 (lower is better)
Translates to: EAPGDSTQAAERAWLSENRLQAR*GRVKWF
Trigger: AAACCATTTTACCCTCCCTCACCTCGCCTGCAAACG...GTTTTCACTAAGCCAGGCCCTTTCAGCAGCCTGTGTGCTGTCCCCAGGAGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
3UTR CCA 72 bp ACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTaGCGCAGACCCGTTTGCAGGCGAGGTGAGGGAGGG +
Preference number: 3 (lower is better)
Translates to: TGVVLEVAGLRE*RRPVCRRGEGG
Trigger: CCCTCCCTCACCTCGCCTGCAAACGGGTCTGCGCCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR CCA 90 bp AGGCTCCTGGGGACAGCACACAGGCTGCTGAAAGGGCCTGGCTTAGTGAAAACATGGGCCGCCGGTAGGTaGCGGCGCGCAGAGGGTGCA +
Preference number: 4 (lower is better)
Translates to: RLLGTAHRLLKGPGLVKTWAAGR*RRAEGA
Trigger: TGCACCCTCTGCGCGCCGCCACCTACCGGCGGCCCA...TGTTTTCACTAAGCCAGGCCCTTTCAGCAGCCTGTGTGCTGTCCCCAGGAGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR TCA 90 bp GAGGCTCCTGGGGACAGCACACAGGCTGCTGAAAGGGCCTGGCTTAGTGAAAACCTGCGATGGGCAGGGTaGCCAGCAAGGATGCTAGCC +
Preference number: 4 (lower is better)
Translates to: EAPGDSTQAAERAWLSENLRWAG*PARMLA
Trigger: GGCTAGCATCCTTGCTGGTCACCCTGCCCATCGCAG...GTTTTCACTAAGCCAGGCCCTTTCAGCAGCCTGTGTGCTGTCCCCAGGAGCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR TCA 90 bp AAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGCGCAGACCCGTTGAGCCCAGCTGGCGTTaGTCCCAGGGGTCCAGGTGG +
Preference number: 4 (lower is better)
Translates to: KTGVVLEVAGLREWRRPVEPSWR*SQGSRW
Trigger: CCACCTGGACCCCTGGGATCAACGCCAGCTGGGCTC...AACGGGTCTGCGCCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR TCA 90 bp GAGGCTCCTGGGGACAGCACACAGGCTGCTGAAAGGGCCTGGCTTAGTGAAAACGTAGGATCACGAAGATaGCCAGGGCGTTTCCCACCA +
Preference number: 4 (lower is better)
Translates to: EAPGDSTQAAERAWLSENVGSRR*PGRFPP
Trigger: TGGTGGGAAACGCCCTGGTCATCTTCGTGATCCTAC...GTTTTCACTAAGCCAGGCCCTTTCAGCAGCCTGTGTGCTGTCCCCAGGAGCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR TCA 90 bp GAGGCTCCTGGGGACAGCACACAGGCTGCTGAAAGGGCCTGGCTTAGTGAAAACCACCCCCTCTGCTTTTaGGAGCAGTGGCATAGTAGT +
Preference number: 4 (lower is better)
Translates to: EAPGDSTQAAERAWLSENHPLCF*EQWHSS
Trigger: ACTACTATGCCACTGCTCTCAAAAGCAGAGGGGGTG...GTTTTCACTAAGCCAGGCCCTTTCAGCAGCCTGTGTGCTGTCCCCAGGAGCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR GCA 90 bp CCTGGCTTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGGCTTGCACGGGCTCCTaGTGGCAGGGCAGAGGAGGG +
Preference number: 4 (lower is better)
Translates to: PGLVKTGVVLEVAGLREWACTGS*WQGRGG
Trigger: CCCTCCTCTGCCCTGCCAGCAGGAGCCCGTGCAAGC...CCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAAGCCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR CCA 90 bp CCTGGCTTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGTTAGCTTGGCCACGCTaGGCCGCCGGTAGGTGGCGG +
Preference number: 4 (lower is better)
Translates to: PGLVKTGVVLEVAGLREWLAWPR*AAGRWR
Trigger: CCGCCACCTACCGGCGGCCCAGCGTGGCCAAGCTAA...CCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAAGCCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR TCA 90 bp CCTGGCTTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGGCAGACCAGGCCGGGTaGGGCCAGTGCAGGTTGCAA +
Preference number: 4 (lower is better)
Translates to: PGLVKTGVVLEVAGLREWADQAG*GQCRLQ
Trigger: TTGCAACCTGCACTGGCCTCACCCGGCCTGGTCTGC...CCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAAGCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR GCA 90 bp AGGCTCCTGGGGACAGCACACAGGCTGCTGAAAGGGCCTGGCTTAGTGAAAACAAGGGCATATGCATCCTaGACCCCCTCTGCTTTTGAG +
Preference number: 4 (lower is better)
Translates to: RLLGTAHRLLKGPGLVKTRAYAS*TPSAFE
Trigger: CTCAAAAGCAGAGGGGGTGCAGGATGCATATGCCCT...TGTTTTCACTAAGCCAGGCCCTTTCAGCAGCCTGTGTGCTGTCCCCAGGAGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR TCA 90 bp GGGCCTGGCTTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGGCCACACTCCCAGGTTaGTTAGCTTGGCCACGCTGG +
Preference number: 4 (lower is better)
Translates to: GPGLVKTGVVLEVAGLREATLPG*LAWPRW
Trigger: CCAGCGTGGCCAAGCTAATCAACCTGGGAGTGTGGC...CTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAAGCCAGGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR CCA 90 bp CCTGGCTTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGCGCCGAGGCCACGAATaGCACGCTGAGCATGAAGAG +
Preference number: 4 (lower is better)
Translates to: PGLVKTGVVLEVAGLREWRRGHE*HAEHEE
Trigger: CTCTTCATGCTCAGCGTGCCATTCGTGGCCTCGGCG...CCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAAGCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR TCA 90 bp GGGCCTGGCTTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGCATCGAGGCTGGTaGCAAACAGGTTCAGAAGCT +
Preference number: 4 (lower is better)
Translates to: GPGLVKTGVVLEVAGLREWHRGW*QTGSEA
Trigger: AGCTTCTGAACCTGTTTGTCACCAGCCTCGATGCCA...CTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAAGCCAGGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
3UTR CAA 72 bp TTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTaGAGAGAGTGGCGCAGACCCGTTTGCAGGCGAGGT +
Preference number: 4 (lower is better)
Translates to: LVKTGVVLEVAG*REWRRPVCRRG
Trigger: ACCTCGCCTGCAAACGGGTCTGCGCCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS GCA 90 bp AGATCACAAAGACCGCAGACCAGGCCGGGTGAGGCCAGTGCAGGTTaGAAGCCACGGCCTCGCCCCCACGAGCTGGCCTGGTGTCAGCGA +
Preference number: 5 (lower is better)
Translates to: RSQRPQTRPGEASAG*KPRPRPHELAWCQR
Trigger: TCGCTGACACCAGGCCAGCTCGTGGGGGCGAGGCCGTGGCTTGCAACCTGCACTGGCCTCACCCGGCCTGGTCTGCGGTCTTTGTGATCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS CCA 90 bp GTGAGGCCAGTGCAGGTTGCAAGCCACGGCCTCGCCCCCACGAGCTaGCCTGGTGTCAGCGAAGACTGCGATGGGCAGGGTGACCAGCAA +
Preference number: 5 (lower is better)
Translates to: VRPVQVASHGLAPTS*PGVSEDCDGQGDQQ
Trigger: TTGCTGGTCACCCTGCCCATCGCAGTCTTCGCTGACACCAGGCCAGCTCGTGGGGGCGAGGCCGTGGCTTGCAACCTGCACTGGCCTCAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS GCA 90 bp TTGCACGGGCTCCTGCTGGCAGGGCAGAGGAGGGCATATGCATCCTaGACCCCCTCTGCTTTTGAGAGCAGTGGCATAGTAGTCCAGGGG +
Preference number: 5 (lower is better)
Translates to: LHGLLLAGQRRAYAS*TPSAFESSGIVVQG
Trigger: CCCCTGGACTACTATGCCACTGCTCTCAAAAGCAGAGGGGGTGCAGGATGCATATGCCCTCCTCTGCCCTGCCAGCAGGAGCCCGTGCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS CCA 90 bp AAAGGGACTTGCTTGCAGCCAGGTTCTGCTTGCACGGGCTCCTGCTaGCAGGGCAGAGGAGGGCATATGCATCCTGCACCCCCTCTGCTT +
Preference number: 5 (lower is better)
Translates to: KGTCLQPGSACTGSC*QGRGGHMHPAPPLL
Trigger: AAGCAGAGGGGGTGCAGGATGCATATGCCCTCCTCTGCCCTGCCAGCAGGAGCCCGTGCAAGCAGAACCTGGCTGCAAGCAAGTCCCTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR CAA 90 bp AGGCTCCTGGGGACAGCACACAGGCTGCTGAAAGGGCCTGGCTTAGTGAAAACAGCAGCCAGGTTCTGCTaGCACGGGCTCCTGCTGGCA +
Preference number: 5 (lower is better)
Translates to: RLLGTAHRLLKGPGLVKTAARFC*HGLLLA
Trigger: TGCCAGCAGGAGCCCGTGCAAGCAGAACCTGGCTGC...TGTTTTCACTAAGCCAGGCCCTTTCAGCAGCCTGTGTGCTGTCCCCAGGAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS GCA 90 bp ATTAGCACGAGCCTAGTGATCTTCTTCTCTGAGCGCCTCCGTTGTTaGCAGCCAGCCCGCAGGGCCACAGCGCGCATCTTGCCCACAATA +
Preference number: 5 (lower is better)
Translates to: ISTSLVIFFSERLRC*QPARRATARILPTI
Trigger: TATTGTGGGCAAGATGCGCGCTGTGGCCCTGCGGGCTGGCTGGCAACAACGGAGGCGCTCAGAGAAGAAGATCACTAGGCTCGTGCTAAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS GCA 90 bp GTAGTGGTCTTGGTGAAAGGGACTTGCTTGCAGCCAGGTTCTGCTTaGACGGGCTCCTGCTGGCAGGGCAGAGGAGGGCATATGCATCCT +
Preference number: 5 (lower is better)
Translates to: VVVLVKGTCLQPGSA*TGSCWQGRGGHMHP
Trigger: AGGATGCATATGCCCTCCTCTGCCCTGCCAGCAGGAGCCCGTGCAAGCAGAACCTGGCTGCAAGCAAGTCCCTTTCACCAAGACCACTAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS GCA 90 bp GAAAGTAGTGGTCTTGGTGAAAGGGACTTGCTTGCAGCCAGGTTCTaGTTGCACGGGCTCCTGCTGGCAGGGCAGAGGAGGGCATATGCA +
Preference number: 5 (lower is better)
Translates to: ESSGLGERDLLAARF*LHGLLLAGQRRAYA
Trigger: TGCATATGCCCTCCTCTGCCCTGCCAGCAGGAGCCCGTGCAAGCAGAACCTGGCTGCAAGCAAGTCCCTTTCACCAAGACCACTACTTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR CAA 90 bp AAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGCGCAGACCCGTTCCCAGGTTGATTAGCTaGGCCACGCTGGGCCGCCGG +
Preference number: 5 (lower is better)
Translates to: KTGVVLEVAGLREWRRPVPRLIS*ATLGRR
Trigger: CCGGCGGCCCAGCGTGGCCAAGCTAATCAACCTGGG...AACGGGTCTGCGCCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR CAA 90 bp AGGCTCCTGGGGACAGCACACAGGCTGCTGAAAGGGCCTGGCTTAGTGAAAACAAGCCACACTCCCAGGTaGATTAGCTTGGCCACGCTG +
Preference number: 5 (lower is better)
Translates to: RLLGTAHRLLKGPGLVKTSHTPR*ISLATL
Trigger: CAGCGTGGCCAAGCTAATCAACCTGGGAGTGTGGCT...TGTTTTCACTAAGCCAGGCCCTTTCAGCAGCCTGTGTGCTGTCCCCAGGAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR CAA 90 bp AGGCTCCTGGGGACAGCACACAGGCTGCTGAAAGGGCCTGGCTTAGTGAAAACACCTCAGCACCTCCAGTaGTTTCCAGGAGACAGCAGC +
Preference number: 5 (lower is better)
Translates to: RLLGTAHRLLKGPGLVKTPQHLQ*FPGDSS
Trigger: GCTGCTGTCTCCTGGAAACAACTGGAGGTGCTGAGG...TGTTTTCACTAAGCCAGGCCCTTTCAGCAGCCTGTGTGCTGTCCCCAGGAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR CAA 90 bp CCTGGCTTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGATGAGGGACACATGGTaGACAGTGGCATCGAGGCTG +
Preference number: 5 (lower is better)
Translates to: PGLVKTGVVLEVAGLREWMRDTW*TVASRL
Trigger: CAGCCTCGATGCCACTGTCAACCATGTGTCCCTCAT...CCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAAGCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR CAA 90 bp CCTGGCTTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGGTGAAAGGGACTTGCTaGCAGCCAGGTTCTGCTTGC +
Preference number: 5 (lower is better)
Translates to: PGLVKTGVVLEVAGLREWVKGTC*QPGSAC
Trigger: GCAAGCAGAACCTGGCTGCAAGCAAGTCCCTTTCAC...CCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAAGCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS-3UTR CAA 90 bp CCTGGCTTAGTGAAAACAGGAGTTGTTCTTGAAGTTGCTGGCTTGAGAGAGTGGCAGAAAGTAGTGGTCTaGGTGAAAGGGACTTGCTTG +
Preference number: 5 (lower is better)
Translates to: PGLVKTGVVLEVAGLREWQKVVV*VKGTCL
Trigger: CAAGCAAGTCCCTTTCACCAAGACCACTACTTTCTG...CCACTCTCTCAAGCCAGCAACTTCAAGAACAACTCCTGTTTTCACTAAGCCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS CCA 72 bp AGCACTGCGCGACACAGCACCGCCCCGAACGGCCAGTaGCGCAGGGCAGCCGCCGAGGCCACGAATGGCACG +
Preference number: 6 (lower is better)
Translates to: STARHSTAPNGQ*RRAAAEATNGT
Trigger: CGTGCCATTCGTGGCCTCGGCGGCTGCCCTGCGCCACTGGCCGTTCGGGGCGGTGCTGTGTCGCGCAGTGCT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS GCA 72 bp AGACCGCAGACCAGGCCGGGTGAGGCCAGTGCAGGTTaGAAGCCACGGCCTCGCCCCCACGAGCTGGCCTGG +
Preference number: 6 (lower is better)
Translates to: RPQTRPGEASAG*KPRPRPHELAW
Trigger: CCAGGCCAGCTCGTGGGGGCGAGGCCGTGGCTTGCAACCTGCACTGGCCTCACCCGGCCTGGTCTGCGGTCT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS CAA 72 bp GCATCCTCCTCCTCCTCGTCCGGAGCCCAGCTGGCGTaGATCCCAGGGGTCCAGGTGGTGTCCTCGACCCCC +
Preference number: 6 (lower is better)
Translates to: ASSSSSSGAQLA*IPGVQVVSSTP
Trigger: GGGGGTCGAGGACACCACCTGGACCCCTGGGATCAACGCCAGCTGGGCTCCGGACGAGGAGGAGGAGGATGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS CCA 72 bp GTGCAGGTTGCAAGCCACGGCCTCGCCCCCACGAGCTaGCCTGGTGTCAGCGAAGACTGCGATGGGCAGGGT +
Preference number: 6 (lower is better)
Translates to: VQVASHGLAPTS*PGVSEDCDGQG
Trigger: ACCCTGCCCATCGCAGTCTTCGCTGACACCAGGCCAGCTCGTGGGGGCGAGGCCGTGGCTTGCAACCTGCAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS GCA 72 bp AGCCTAGTGATCTTCTTCTCTGAGCGCCTCCGTTGTTaGCAGCCAGCCCGCAGGGCCACAGCGCGCATCTTG +
Preference number: 6 (lower is better)
Translates to: SLVIFFSERLRC*QPARRATARIL
Trigger: CAAGATGCGCGCTGTGGCCCTGCGGGCTGGCTGGCAACAACGGAGGCGCTCAGAGAAGAAGATCACTAGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS GCA 72 bp GGTCTTGGTGAAAGGGACTTGCTTGCAGCCAGGTTCTaGTTGCACGGGCTCCTGCTGGCAGGGCAGAGGAGG +
Preference number: 6 (lower is better)
Translates to: GLGERDLLAARF*LHGLLLAGQRR
Trigger: CCTCCTCTGCCCTGCCAGCAGGAGCCCGTGCAAGCAGAACCTGGCTGCAAGCAAGTCCCTTTCACCAAGACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS CAA 90 bp GAGCAGTGGCATAGTAGTCCAGGGGCTCTTCCTCAGCACCTCCAGTaGTTTCCAGGAGACAGCAGCGCAGGCACAGAACCCGCTGGAAAG +
Preference number: 6 (lower is better)
Translates to: EQWHSSPGALPQHLQ*FPGDSSAGTEPAGK
Trigger: CTTTCCAGCGGGTTCTGTGCCTGCGCTGCTGTCTCCTGGAAACAACTGGAGGTGCTGAGGAAGAGCCCCTGGACTACTATGCCACTGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4
CDS GCA 72 bp CTCCTGCTGGCAGGGCAGAGGAGGGCATATGCATCCTaGACCCCCTCTGCTTTTGAGAGCAGTGGCATAGTA +
Preference number: 6 (lower is better)
Translates to: LLLAGQRRAYAS*TPSAFESSGIV
Trigger: TACTATGCCACTGCTCTCAAAAGCAGAGGGGGTGCAGGATGCATATGCCCTCCTCTGCCCTGCCAGCAGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109962.4