Pregenerated sensors for SST (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004366Ensembl transcript IDs: ENSMUST00000004480.5
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TACAGTCTTCAATTTCTAATGCAGGGTCAAGTTGAGCATCGGGGGCCAGGAGTTAAGAGATATGGGGTTTaGGGGAGAGGGATCAGAGGT | + |
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Preference number: 2 (lower is better) Translates to: YSLQFLMQGQVEHRGPGVKRYGV*GRGIRG Trigger: ACCTCTGATCCCTCTCCCCCAAACCCCATATCTCTT...AACTCCTGGCCCCCGATGCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS-3UTR CCA 90 bp | CAGGGTCAAGTTGAGCATCGGGGGCCAGGAGTTAAGGAAGAGATATGGGGTTTGTCCTGCTCAGCTGCCTaGGGCAAATCCTCGGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: QGQVEHRGPGVKEEIWGLSCSAA*GKSSGS Trigger: GGAGCCCGAGGATTTGCCCCAGGCAGCTGAGCAGGA...CAAACCCCATATCTCTTCCTTAACTCCTGGCCCCCGATGCTCAACTTGACCCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS-3UTR CCA 90 bp | TTTCTAATGCAGGGTCAAGTTGAGCATCGGGGGCCAGGAGTTAAGGAAGAGATAGAAACTGACGGAGTCTaGGGTCCGAGGGCGCGCCGG | + |
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Preference number: 4 (lower is better) Translates to: FLMQGQVEHRGPGVKEEIETDGV*GPRARR Trigger: CCGGCGCGCCCTCGGACCCCAGACTCCGTCAGTTTC...TATCTCTTCCTTAACTCCTGGCCCCCGATGCTCAACTTGACCCTGCATTAGAAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS-3UTR GCA 90 bp | TTTCTAATGCAGGGTCAAGTTGAGCATCGGGGGCCAGGAGTTAAGGAAGAGATACCAAAGCCAGGACGATaGAGAGCGCAGCCAGGGCGC | + |
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Preference number: 4 (lower is better) Translates to: FLMQGQVEHRGPGVKEEIPKPGR*RAQPGR Trigger: GCGCCCTGGCTGCGCTCTGCATCGTCCTGGCTTTGG...TATCTCTTCCTTAACTCCTGGCCCCCGATGCTCAACTTGACCCTGCATTAGAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS-3UTR GCA 90 bp | GGTCAAGTTGAGCATCGGGGGCCAGGAGTTAAGGAAGAGATATGGGGTTTGGGGTCCAGAAGAAGTTCTTaGAGCCAGCTTTGCGTTCCC | + |
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Preference number: 4 (lower is better) Translates to: GQVEHRGPGVKEEIWGLGSRRSS*SQLCVP Trigger: GGGAACGCAAAGCTGGCTGCAAGAACTTCTTCTGGA...CCCCAAACCCCATATCTCTTCCTTAACTCCTGGCCCCCGATGCTCAACTTGACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS-3UTR CCA 90 bp | CTAATGCAGGGTCAAGTTGAGCATCGGGGGCCAGGAGTTAAGGAAGAGATATGGTTGCTGGGTTCGAGTTaGCAGACCTCTGCAGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LMQGQVEHRGPGVKEEIWLLGSS*QTSAAP Trigger: TGGAGCTGCAGAGGTCTGCCAACTCGAACCCAGCAA...CCATATCTCTTCCTTAACTCCTGGCCCCCGATGCTCAACTTGACCCTGCATTAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS-3UTR GCA 90 bp | AGTCTTCAATTTCTAATGCAGGGTCAAGTTGAGCATCGGGGGCCAGGAGTTAAGGAGTTGGCAGACCTCTaGAGCTCCAGCCTCATCTCG | + |
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Preference number: 4 (lower is better) Translates to: SLQFLMQGQVEHRGPGVKELADL*SSSLIS Trigger: CGAGATGAGGCTGGAGCTGCAGAGGTCTGCCAACTC...CTTAACTCCTGGCCCCCGATGCTCAACTTGACCCTGCATTAGAAATTGAAGACT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS-3UTR GCA 90 bp | CTTCAATTTCTAATGCAGGGTCAAGTTGAGCATCGGGGGCCAGGAGTTAAGGAATCTTGCAGCCAGCTTTaGGTTCCCGGGGTGCCATTG | + |
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Preference number: 4 (lower is better) Translates to: LQFLMQGQVEHRGPGVKESCSQL*VPGVPL Trigger: CAATGGCACCCCGGGAACGCAAAGCTGGCTGCAAGA...TTCCTTAACTCCTGGCCCCCGATGCTCAACTTGACCCTGCATTAGAAATTGAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS-3UTR GCA 90 bp | AGTCTTCAATTTCTAATGCAGGGTCAAGTTGAGCATCGGGGGCCAGGAGTTAAGCTCGGACAGCAGCTCTaGCAAGAAGTACTTGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: SLQFLMQGQVEHRGPGVKLGQQL*QEVLGQ Trigger: CTGGCCAAGTACTTCTTGGCAGAGCTGCTGTCCGAG...CTTAACTCCTGGCCCCCGATGCTCAACTTGACCCTGCATTAGAAATTGAAGACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS-3UTR GCA 90 bp | AGTCTTCAATTTCTAATGCAGGGTCAAGTTGAGCATCGGGGGCCAGGAGTTAAGTTTGCGTTCCCGGGGTaGCATTGCTGGGTTCGAGTT | + |
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Preference number: 4 (lower is better) Translates to: SLQFLMQGQVEHRGPGVKFAFPG*HCWVRV Trigger: AACTCGAACCCAGCAATGGCACCCCGGGAACGCAAA...CTTAACTCCTGGCCCCCGATGCTCAACTTGACCCTGCATTAGAAATTGAAGACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS-3UTR CCA 90 bp | TTTCTAATGCAGGGTCAAGTTGAGCATCGGGGGCCAGGAGTTAAGGAAGAGATACATTCTCTGTCTGGTTaGGCTCGGACAGCAGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: FLMQGQVEHRGPGVKEEIHSLSG*ARTAAL Trigger: CAGAGCTGCTGTCCGAGCCCAACCAGACAGAGAATG...TATCTCTTCCTTAACTCCTGGCCCCCGATGCTCAACTTGACCCTGCATTAGAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS-3UTR CCA 90 bp | CTTCAATTTCTAATGCAGGGTCAAGTTGAGCATCGGGGGCCAGGAGTTAAGGAAGCATCATTCTCTGTCTaGTTGGGCTCGGACAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LQFLMQGQVEHRGPGVKEASFSV*LGSDSS Trigger: GCTGCTGTCCGAGCCCAACCAGACAGAGAATGATGC...TTCCTTAACTCCTGGCCCCCGATGCTCAACTTGACCCTGCATTAGAAATTGAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS-3UTR CCA 90 bp | TGTATTTACAGTCTTCAATTTCTAATGCAGGGTCAAGTTGAGCATCGGGGGCCACCGGGGTGCCATTGCTaGGTTCGAGTTGGCAGACCT | + |
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Preference number: 4 (lower is better) Translates to: CIYSLQFLMQGQVEHRGPPGCHC*VRVGRP Trigger: AGGTCTGCCAACTCGAACCCAGCAATGGCACCCCGG...TGGCCCCCGATGCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS-3UTR TCA 90 bp | TGTATTTACAGTCTTCAATTTCTAATGCAGGGTCAAGTTGAGCATCGGGGGCCAGACTTCTGCAGAAACTaGCGGAGTCTGGGGTCCGAG | + |
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Preference number: 4 (lower is better) Translates to: CIYSLQFLMQGQVEHRGPDFCRN*RSLGSE Trigger: CTCGGACCCCAGACTCCGTCAGTTTCTGCAGAAGTC...TGGCCCCCGATGCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS TCA 90 bp | AGTTCCTGTTTCCCGGTGGCAGCCGCCAGAGACTTCTGCAGAAACTaGCGGAGTCTGGGGTCCGAGGGCGCGCCGGTGACACCGCCCAAA | + |
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Preference number: 5 (lower is better) Translates to: SSCFPVAAARDFCRN*RSLGSEGAPVTPPK Trigger: TTTGGGCGGTGTCACCGGCGCGCCCTCGGACCCCAGACTCCGTCAGTTTCTGCAGAAGTCTCTGGCGGCTGCCACCGGGAAACAGGAACT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS GCA 90 bp | GGGTTCGAGTTGGCAGACCTCTGCAGCTCCAGCCTCATCTCGTCCTaGTCAGCTGCCTGGGGCAAATCCTCGGGCTCCAGGGCATCATTC | + |
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Preference number: 5 (lower is better) Translates to: GFELADLCSSSLISS*SAAWGKSSGSRASF Trigger: GAATGATGCCCTGGAGCCCGAGGATTTGCCCCAGGCAGCTGAGCAGGACGAGATGAGGCTGGAGCTGCAGAGGTCTGCCAACTCGAACCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS GCA 90 bp | GTTGGCAGACCTCTGCAGCTCCAGCCTCATCTCGTCCTGCTCAGCTaGCTGGGGCAAATCCTCGGGCTCCAGGGCATCATTCTCTGTCTG | + |
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Preference number: 5 (lower is better) Translates to: VGRPLQLQPHLVLLS*LGQILGLQGIILCL Trigger: CAGACAGAGAATGATGCCCTGGAGCCCGAGGATTTGCCCCAGGCAGCTGAGCAGGACGAGATGAGGCTGGAGCTGCAGAGGTCTGCCAAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS GCA 90 bp | CTCCAGGGCATCATTCTCTGTCTGGTTGGGCTCGGACAGCAGCTCTaGCAAGAAGTACTTGGCCAGTTCCTGTTTCCCGGTGGCAGCCGC | + |
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Preference number: 5 (lower is better) Translates to: LQGIILCLVGLGQQL*QEVLGQFLFPGGSR Trigger: GCGGCTGCCACCGGGAAACAGGAACTGGCCAAGTACTTCTTGGCAGAGCTGCTGTCCGAGCCCAACCAGACAGAGAATGATGCCCTGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS CCA 90 bp | GCTGCCTGGGGCAAATCCTCGGGCTCCAGGGCATCATTCTCTGTCTaGTTGGGCTCGGACAGCAGCTCTGCCAAGAAGTACTTGGCCAGT | + |
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Preference number: 5 (lower is better) Translates to: AAWGKSSGSRASFSV*LGSDSSSAKKYLAS Trigger: ACTGGCCAAGTACTTCTTGGCAGAGCTGCTGTCCGAGCCCAACCAGACAGAGAATGATGCCCTGGAGCCCGAGGATTTGCCCCAGGCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS GCA 90 bp | CCAGAAGAAGTTCTTGCAGCCAGCTTTGCGTTCCCGGGGTGCCATTaGTGGGTTCGAGTTGGCAGACCTCTGCAGCTCCAGCCTCATCTC | + |
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Preference number: 5 (lower is better) Translates to: PEEVLAASFAFPGCH*WVRVGRPLQLQPHL Trigger: GAGATGAGGCTGGAGCTGCAGAGGTCTGCCAACTCGAACCCAGCAATGGCACCCCGGGAACGCAAAGCTGGCTGCAAGAACTTCTTCTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS CCA 90 bp | TCTCTGTCTGGTTGGGCTCGGACAGCAGCTCTGCCAAGAAGTACTTaGCCAGTTCCTGTTTCCCGGTGGCAGCCGCCAGAGACTTCTGCA | + |
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Preference number: 5 (lower is better) Translates to: SLSGWARTAALPRST*PVPVSRWQPPETSA Trigger: TGCAGAAGTCTCTGGCGGCTGCCACCGGGAAACAGGAACTGGCCAAGTACTTCTTGGCAGAGCTGCTGTCCGAGCCCAACCAGACAGAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS CCA 90 bp | CCTGGGGCAAATCCTCGGGCTCCAGGGCATCATTCTCTGTCTGGTTaGGCTCGGACAGCAGCTCTGCCAAGAAGTACTTGGCCAGTTCCT | + |
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Preference number: 5 (lower is better) Translates to: PGANPRAPGHHSLSG*ARTAALPRSTWPVP Trigger: AGGAACTGGCCAAGTACTTCTTGGCAGAGCTGCTGTCCGAGCCCAACCAGACAGAGAATGATGCCCTGGAGCCCGAGGATTTGCCCCAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS CCA 90 bp | GAAGAAGTTCTTGCAGCCAGCTTTGCGTTCCCGGGGTGCCATTGCTaGGTTCGAGTTGGCAGACCTCTGCAGCTCCAGCCTCATCTCGTC | + |
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Preference number: 5 (lower is better) Translates to: EEVLAASFAFPGCHC*VRVGRPLQLQPHLV Trigger: GACGAGATGAGGCTGGAGCTGCAGAGGTCTGCCAACTCGAACCCAGCAATGGCACCCCGGGAACGCAAAGCTGGCTGCAAGAACTTCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS-3UTR CAA 90 bp | CAGGGTCAAGTTGAGCATCGGGGGCCAGGAGTTAAGGAAGAGATATGGGGTTTGGTTCCCGGGGTGCCATaGCTGGGTTCGAGTTGGCAG | + |
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Preference number: 5 (lower is better) Translates to: QGQVEHRGPGVKEEIWGLVPGVP*LGSSWQ Trigger: CTGCCAACTCGAACCCAGCAATGGCACCCCGGGAAC...CAAACCCCATATCTCTTCCTTAACTCCTGGCCCCCGATGCTCAACTTGACCCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS-3UTR CAA 90 bp | CAGGGTCAAGTTGAGCATCGGGGGCCAGGAGTTAAGGAAGAGATATGGGGTTTGTTCTTGCAGCCAGCTTaGCGTTCCCGGGGTGCCATT | + |
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Preference number: 5 (lower is better) Translates to: QGQVEHRGPGVKEEIWGLFLQPA*RSRGAI Trigger: AATGGCACCCCGGGAACGCAAAGCTGGCTGCAAGAA...CAAACCCCATATCTCTTCCTTAACTCCTGGCCCCCGATGCTCAACTTGACCCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS-3UTR CAA 90 bp | GTCAAGTTGAGCATCGGGGGCCAGGAGTTAAGGAAGAGATATGGGGTTTGGGGGTCTGCCAAGAAGTACTaGGCCAGTTCCTGTTTCCCG | + |
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Preference number: 5 (lower is better) Translates to: VKLSIGGQELRKRYGVWGSAKKY*ASSCFP Trigger: CGGGAAACAGGAACTGGCCAAGTACTTCTTGGCAGA...CCCCCAAACCCCATATCTCTTCCTTAACTCCTGGCCCCCGATGCTCAACTTGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS-3UTR CAA 90 bp | TACAGTCTTCAATTTCTAATGCAGGGTCAAGTTGAGCATCGGGGGCCAGGAGTTATTGCTGGGTTCGAGTaGGCAGACCTCTGCAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: YSLQFLMQGQVEHRGPGVIAGFE*ADLCSS Trigger: GGAGCTGCAGAGGTCTGCCAACTCGAACCCAGCAAT...AACTCCTGGCCCCCGATGCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS-3UTR CAA 90 bp | TACAGTCTTCAATTTCTAATGCAGGGTCAAGTTGAGCATCGGGGGCCAGGAGTTTCATTCTCTGTCTGGTaGGGCTCGGACAGCAGCTCT | + |
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Preference number: 5 (lower is better) Translates to: YSLQFLMQGQVEHRGPGVSFSVW*GSDSSS Trigger: AGAGCTGCTGTCCGAGCCCAACCAGACAGAGAATGA...AACTCCTGGCCCCCGATGCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS TCA 72 bp | TTCCCGGTGGCAGCCGCCAGAGACTTCTGCAGAAACTaGCGGAGTCTGGGGTCCGAGGGCGCGCCGGTGACA | + |
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Preference number: 6 (lower is better) Translates to: FPVAAARDFCRN*RSLGSEGAPVT Trigger: TGTCACCGGCGCGCCCTCGGACCCCAGACTCCGTCAGTTTCTGCAGAAGTCTCTGGCGGCTGCCACCGGGAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS CCA 72 bp | GGTTGGGCTCGGACAGCAGCTCTGCCAAGAAGTACTTaGCCAGTTCCTGTTTCCCGGTGGCAGCCGCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: GWARTAALPRST*PVPVSRWQPPE Trigger: CTCTGGCGGCTGCCACCGGGAAACAGGAACTGGCCAAGTACTTCTTGGCAGAGCTGCTGTCCGAGCCCAACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS CCA 72 bp | CTTGCAGCCAGCTTTGCGTTCCCGGGGTGCCATTGCTaGGTTCGAGTTGGCAGACCTCTGCAGCTCCAGCCT | + |
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Preference number: 6 (lower is better) Translates to: LAASFAFPGCHC*VRVGRPLQLQP Trigger: AGGCTGGAGCTGCAGAGGTCTGCCAACTCGAACCCAGCAATGGCACCCCGGGAACGCAAAGCTGGCTGCAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS GCA 72 bp | GTTCTTGCAGCCAGCTTTGCGTTCCCGGGGTGCCATTaGTGGGTTCGAGTTGGCAGACCTCTGCAGCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: VLAASFAFPGCH*WVRVGRPLQLQ Trigger: CTGGAGCTGCAGAGGTCTGCCAACTCGAACCCAGCAATGGCACCCCGGGAACGCAAAGCTGGCTGCAAGAAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS CCA 72 bp | CTTTGCGTTCCCGGGGTGCCATTGCTGGGTTCGAGTTaGCAGACCTCTGCAGCTCCAGCCTCATCTCGTCCT | + |
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Preference number: 6 (lower is better) Translates to: LCVPGVPLLGSS*QTSAAPASSRP Trigger: AGGACGAGATGAGGCTGGAGCTGCAGAGGTCTGCCAACTCGAACCCAGCAATGGCACCCCGGGAACGCAAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS CAA 72 bp | TGGTTGGGCTCGGACAGCAGCTCTGCCAAGAAGTACTaGGCCAGTTCCTGTTTCCCGGTGGCAGCCGCCAGA | + |
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Preference number: 6 (lower is better) Translates to: WLGSDSSSAKKY*ASSCFPVAAAR Trigger: TCTGGCGGCTGCCACCGGGAAACAGGAACTGGCCAAGTACTTCTTGGCAGAGCTGCTGTCCGAGCCCAACCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS CAA 90 bp | GCCTGGGGCAAATCCTCGGGCTCCAGGGCATCATTCTCTGTCTGGTaGGGCTCGGACAGCAGCTCTGCCAAGAAGTACTTGGCCAGTTCC | + |
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Preference number: 6 (lower is better) Translates to: AWGKSSGSRASFSVW*GSDSSSAKKYLASS Trigger: GGAACTGGCCAAGTACTTCTTGGCAGAGCTGCTGTCCGAGCCCAACCAGACAGAGAATGATGCCCTGGAGCCCGAGGATTTGCCCCAGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS CAA 72 bp | AGTTCTTGCAGCCAGCTTTGCGTTCCCGGGGTGCCATaGCTGGGTTCGAGTTGGCAGACCTCTGCAGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: SSCSQLCVPGVP*LGSSWQTSAAP Trigger: TGGAGCTGCAGAGGTCTGCCAACTCGAACCCAGCAATGGCACCCCGGGAACGCAAAGCTGGCTGCAAGAACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS CAA 90 bp | TTCTCTGTCTGGTTGGGCTCGGACAGCAGCTCTGCCAAGAAGTACTaGGCCAGTTCCTGTTTCCCGGTGGCAGCCGCCAGAGACTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: FSVWLGSDSSSAKKY*ASSCFPVAAARDFC Trigger: GCAGAAGTCTCTGGCGGCTGCCACCGGGAAACAGGAACTGGCCAAGTACTTCTTGGCAGAGCTGCTGTCCGAGCCCAACCAGACAGAGAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS CAA 90 bp | TCCAGAAGAAGTTCTTGCAGCCAGCTTTGCGTTCCCGGGGTGCCATaGCTGGGTTCGAGTTGGCAGACCTCTGCAGCTCCAGCCTCATCT | + |
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Preference number: 6 (lower is better) Translates to: SRRSSCSQLCVPGVP*LGSSWQTSAAPASS Trigger: AGATGAGGCTGGAGCTGCAGAGGTCTGCCAACTCGAACCCAGCAATGGCACCCCGGGAACGCAAAGCTGGCTGCAAGAACTTCTTCTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS GCA 72 bp | GAAGAAGTTCTTGCAGCCAGCTTTGCGTTCCCGGGGTaGCATTGCTGGGTTCGAGTTGGCAGACCTCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: EEVLAASFAFPG*HCWVRVGRPLQ Trigger: CTGCAGAGGTCTGCCAACTCGAACCCAGCAATGGCACCCCGGGAACGCAAAGCTGGCTGCAAGAACTTCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS CCA 72 bp | GGCAAATCCTCGGGCTCCAGGGCATCATTCTCTGTCTaGTTGGGCTCGGACAGCAGCTCTGCCAAGAAGTAC | + |
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Preference number: 6 (lower is better) Translates to: GKSSGSRASFSV*LGSDSSSAKKY Trigger: GTACTTCTTGGCAGAGCTGCTGTCCGAGCCCAACCAGACAGAGAATGATGCCCTGGAGCCCGAGGATTTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS CAA 72 bp | AAATCCTCGGGCTCCAGGGCATCATTCTCTGTCTGGTaGGGCTCGGACAGCAGCTCTGCCAAGAAGTACTTG | + |
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Preference number: 6 (lower is better) Translates to: KSSGSRASFSVW*GSDSSSAKKYL Trigger: CAAGTACTTCTTGGCAGAGCTGCTGTCCGAGCCCAACCAGACAGAGAATGATGCCCTGGAGCCCGAGGATTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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| CDS GCA 72 bp | ATCATTCTCTGTCTGGTTGGGCTCGGACAGCAGCTCTaGCAAGAAGTACTTGGCCAGTTCCTGTTTCCCGGT | + |
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Preference number: 6 (lower is better) Translates to: IILCLVGLGQQL*QEVLGQFLFPG Trigger: ACCGGGAAACAGGAACTGGCCAAGTACTTCTTGGCAGAGCTGCTGTCCGAGCCCAACCAGACAGAGAATGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004480.5 |
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