Pregenerated sensors for SSR4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002014

Ensembl transcript IDs: ENSMUST00000002090.3, ENSMUST00000166518.8

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TCTGAGCCTTCCTTAGGAGGCTATAGGACTCTTCATCAAAGAATCTaGCCTCATAGGTGCCCGCATGAGCGCTCTTGTGCTCCAGGCTCC	+
Preference number: 5 (lower is better) Translates to: SEPSLGGYRTLHQRI*PHRCPHERSCAPGS Trigger: GGAGCCTGGAGCACAAGAGCGCTCATGCGGGCACCTATGAGGTCAGATTCTTTGATGAAGAGTCCTATAGCCTCCTAAGGAAGGCTCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002090.3 ENSMUST00000166518.8
CDS TCA 90 bp	GTCGGCATAAAGAGCCATGTTCTGGACCCTGTTCTTGCAGGTCAGTaGAATCTCCACGATGAATACAGTCTCTGTAGAAATGACGGCATC	+
Preference number: 5 (lower is better) Translates to: VGIKSHVLDPVLAGQ*NLHDEYSLCRNDGI Trigger: GATGCCGTCATTTCTACAGAGACTGTATTCATCGTGGAGATTTCACTGACCTGCAAGAACAGGGTCCAGAACATGGCTCTTTATGCCGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002090.3 ENSMUST00000166518.8
CDS CAA 90 bp	GGACACCTGATATCGACCCACATCCTGGCCGCGGGTTACAGGAAATaGTTTTCCACTAACGTCGGCATAAAGAGCCATGTTCTGGACCCT	+
Preference number: 6 (lower is better) Translates to: GHLISTHILAAGYRK*FSTNVGIKSHVLDP Trigger: AGGGTCCAGAACATGGCTCTTTATGCCGACGTTAGTGGAAAACAATTTCCTGTAACCCGCGGCCAGGATGTGGGTCGATATCAGGTGTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002090.3 ENSMUST00000166518.8
CDS CCA 72 bp	GGTACCCCGATGGTCCACACTGACTGTGAACAGGGGTaGAATGATAGAAACGTCCTCATTATTTCTCTGAGC	+
Preference number: 6 (lower is better) Translates to: GTPMVHTDCEQG*NDRNVLIISLS Trigger: GCTCAGAGAAATAATGAGGACGTTTCTATCATTCCACCCCTGTTCACAGTCAGTGTGGACCATCGGGGTACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002090.3 ENSMUST00000166518.8
CDS CAA 72 bp	ATATCGACCCACATCCTGGCCGCGGGTTACAGGAAATaGTTTTCCACTAACGTCGGCATAAAGAGCCATGTT	+
Preference number: 6 (lower is better) Translates to: ISTHILAAGYRK*FSTNVGIKSHV Trigger: AACATGGCTCTTTATGCCGACGTTAGTGGAAAACAATTTCCTGTAACCCGCGGCCAGGATGTGGGTCGATAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002090.3 ENSMUST00000166518.8

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