Pregenerated sensors for SSR3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027828Ensembl transcript IDs: ENSMUST00000029414.12, ENSMUST00000119896.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTTCCTGGCTACTTAGAGACTGAGCAAACCATGTTGGGGGCACTCTaGCAAGGTCCACCAGTATTCCCAAAAGATGAGTTGGAAAGTGTC | + |
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Preference number: 1 (lower is better) Translates to: VPGYLETEQTMLGAL*QGPPVFPKDELESV Trigger: GACACTTTCCAACTCATCTTTTGGGAATACTGGTGGACCTTGCCAGAGTGCCCCCAACATGGTTTGCTCAGTCTCTAAGTAGCCAGGAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119896.2 |
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| 3UTR TCA 90 bp | TTGAATCCCTTCTCATTTCCCCATTCATTCCACATTACCTGGAAATaGCACTCAGGTAACAATGTATCACTGAAAAGAACTGAACACTTG | + |
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Preference number: 1 (lower is better) Translates to: LNPFSFPHSFHITWK*HSGNNVSLKRTEHL Trigger: CAAGTGTTCAGTTCTTTTCAGTGATACATTGTTACCTGAGTGTCATTTCCAGGTAATGTGGAATGAATGGGGAAATGAGAAGGGATTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR TCA 90 bp | GGTAACAATGTATCACTGAAAAGAACTGAACACTTGGAGATAAAATaGTTCTCCAGGCAGACAGTAAGGAGTAACATGACTATACAAGTG | + |
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Preference number: 1 (lower is better) Translates to: GNNVSLKRTEHLEIK*FSRQTVRSNMTIQV Trigger: CACTTGTATAGTCATGTTACTCCTTACTGTCTGCCTGGAGAATCATTTTATCTCCAAGTGTTCAGTTCTTTTCAGTGATACATTGTTACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR CAA 90 bp | GAGGTTCTGAAGGTTCCTGGCTACTTAGAGACTGAGCAAACCATGTaGGGGGCACTCTGGCAAGGTCCACCAGTATTCCCAAAAGATGAG | + |
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Preference number: 2 (lower is better) Translates to: EVLKVPGYLETEQTM*GALWQGPPVFPKDE Trigger: CTCATCTTTTGGGAATACTGGTGGACCTTGCCAGAGTGCCCCCAACATGGTTTGCTCAGTCTCTAAGTAGCCAGGAACCTTCAGAACCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119896.2 |
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| 3UTR-3UTR TCA 90 bp | GGTGTGATGTATGGGGTCTTTTTATGGTACAAACTCTGCCTGCCACAGATTTCACCAACCTGGCCACCCTaGTGCTTTCCCATATACCAC | + |
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Preference number: 2 (lower is better) Translates to: GVMYGVFLWYKLCLPQISPTWPP*CFPIYH Trigger: GTGGTATATGGGAAAGCATCAGGGTGGCCAGGTTGG...TGAAATCTGTGGCAGGCAGAGTTTGTACCATAAAAAGACCCCATACATCACACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR-3UTR TCA 90 bp | AAAGAATTCCAGGGTTACGTTCACAAAAATTCTTTTGGTCTCTCATGTGTCAATATGGCAGGGTCAAGCTaGCCTCCCGGCCACCCAGGG | + |
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Preference number: 2 (lower is better) Translates to: KEFQGYVHKNSFGLSCVNMAGSS*PPGHPG Trigger: CCCTGGGTGGCCGGGAGGTCAGCTTGACCCTGCCAT...ATTGACACATGAGAGACCAAAAGAATTTTTGTGAACGTAACCCTGGAATTCTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR-3UTR GCA 90 bp | CACAGTAGAAATACTCTCTCACTTAATATTCTGCCTGTGGTGCGAAAGCCTGGTCAGCTGAACAGTGTGTaGTTTGGCCTCACAGGCCAA | + |
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Preference number: 2 (lower is better) Translates to: HSRNTLSLNILPVVRKPGQLNSV*FGLTGQ Trigger: TTGGCCTGTGAGGCCAAAGCACACACTGTTCAGCTG...ACCAGGCTTTCGCACCACAGGCAGAATATTAAGTGAGAGAGTATTTCTACTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR-3UTR GCA 90 bp | GGTGTGATGTATGGGGTCTTTTTATGGTACAAACTCTGCCTGCCACAGATTTCAATATTCTGCCTGTGGTaGGAAAGCCTGGTCATAGAC | + |
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Preference number: 2 (lower is better) Translates to: GVMYGVFLWYKLCLPQISIFCLW*ESLVID Trigger: GTCTATGACCAGGCTTTCGCACCACAGGCAGAATAT...TGAAATCTGTGGCAGGCAGAGTTTGTACCATAAAAAGACCCCATACATCACACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR-3UTR CCA 90 bp | AGCAAACCATGTTGGGGGCACTCTGGCAAGGTCCACCAGTATTCCCAAAAGATGCTGGCTGTGCTTTTCTaGATAATACCTTTGATAAAA | + |
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Preference number: 2 (lower is better) Translates to: SKPCWGHSGKVHQYSQKMLAVLF*IIPLIK Trigger: TTTTATCAAAGGTATTATCCAGAAAAGCACAGCCAG...CATCTTTTGGGAATACTGGTGGACCTTGCCAGAGTGCCCCCAACATGGTTTGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000119896.2 |
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| 3UTR-3UTR TCA 90 bp | GGTGTGATGTATGGGGTCTTTTTATGGTACAAACTCTGCCTGCCACAGATTTCAAATGCCCTGGTACTCTaGGTTTCCCTTTCAATTCAT | + |
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Preference number: 2 (lower is better) Translates to: GVMYGVFLWYKLCLPQISNALVL*VSLSIH Trigger: ATGAATTGAAAGGGAAACTCAGAGTACCAGGGCATT...TGAAATCTGTGGCAGGCAGAGTTTGTACCATAAAAAGACCCCATACATCACACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR-3UTR TCA 90 bp | TGGCAAGTTCACAGCAGTCACTTAGAAGGAGTTTGGTTTAGCTTTGGTAACATGGTTATTTTCTCCTCGTaGTTACAGCACATTGCAAGA | + |
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Preference number: 2 (lower is better) Translates to: WQVHSSHLEGVWFSFGNMVIFSS*LQHIAR Trigger: TCTTGCAATGTGCTGTAATCACGAGGAGAAAATAAC...CATGTTACCAAAGCTAAACCAAACTCCTTCTAAGTGACTGCTGTGAACTTGCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR-3UTR TCA 90 bp | GGTGTGATGTATGGGGTCTTTTTATGGTACAAACTCTGCCTGCCACAGATTTCAGTAACAATGTATCACTaGAAAGAACTGAACACTTGG | + |
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Preference number: 2 (lower is better) Translates to: GVMYGVFLWYKLCLPQISVTMYH*KELNTW Trigger: CCAAGTGTTCAGTTCTTTTCAGTGATACATTGTTAC...TGAAATCTGTGGCAGGCAGAGTTTGTACCATAAAAAGACCCCATACATCACACC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR-3UTR GCA 90 bp | AAGCCTGGTCATAGACACAATGATCCCAGTGACTTCGCACATCAAACCAACATGAAAGTTGTAATATTGTaGTTGGAACACAGAGAACCA | + |
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Preference number: 2 (lower is better) Translates to: KPGHRHNDPSDFAHQTNMKVVIL*LEHREP Trigger: TGGTTCTCTGTGTTCCAAGCACAATATTACAACTTT...CATGTTGGTTTGATGTGCGAAGTCACTGGGATCATTGTGTCTATGACCAGGCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR-3UTR CCA 90 bp | ACCCTCATGGAAGAACTGGTCAAAGAGCATGCAGACAAGCAAAATAGTAAAGGGTCCCAAAAGATGAGTTaGAAAGTGTCTGATATTTCA | + |
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Preference number: 2 (lower is better) Translates to: TLMEELVKEHADKQNSKGSQKMS*KVSDIS Trigger: TGAAATATCAGACACTTTCCAACTCATCTTTTGGGA...CCCTTTACTATTTTGCTTGTCTGCATGCTCTTTGACCAGTTCTTCCATGAGGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119896.2 |
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| 3UTR CAA 90 bp | TTGGAGAGCCCAAAGAATTCCAGGGTTACGTTCACAAAAATTCTTTaGGTCTCTCATGTGTCAATAATCACAGTAGAAATACTCTCTCAC | + |
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Preference number: 2 (lower is better) Translates to: LESPKNSRVTFTKIL*VSHVSIITVEILSH Trigger: GTGAGAGAGTATTTCTACTGTGATTATTGACACATGAGAGACCAAAAGAATTTTTGTGAACGTAACCCTGGAATTCTTTGGGCTCTCCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR-3UTR CCA 90 bp | TGGCAAGTTCACAGCAGTCACTTAGAAGGAGTTTGGTTTAGCTTTGGTAACATGTTTAATAAAATGCCCTaGTACTCTGAGTTTCCCTTT | + |
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Preference number: 2 (lower is better) Translates to: WQVHSSHLEGVWFSFGNMFNKMP*YSEFPF Trigger: AAAGGGAAACTCAGAGTACCAGGGCATTTTATTAAA...CATGTTACCAAAGCTAAACCAAACTCCTTCTAAGTGACTGCTGTGAACTTGCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR-3UTR GCA 90 bp | CAGAAATGTGGTAGCACAGAGTTAGAGAACATGTTCAGAGTTAAAAACAAAGACGTGATTACAGCACATTaGAAGACTCCTTGCCTTTTA | + |
|
Preference number: 2 (lower is better) Translates to: QKCGSTELENMFRVKNKDVITAH*KTPCLL Trigger: TAAAAGGCAAGGAGTCTTGCAATGTGCTGTAATCAC...GTCTTTGTTTTTAACTCTGAACATGTTCTCTAACTCTGTGCTACCACATTTCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR CAA 90 bp | GGAAGAGGATTCACTCTAAGATTTACAGTTCGAAAAGTTGTAATATaGTGCTTGGAACACAGAGAACCAGTTATTAACTTCTTCCTCCTA | + |
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Preference number: 2 (lower is better) Translates to: GRGFTLRFTVRKVVI*CLEHREPVINFFLL Trigger: TAGGAGGAAGAAGTTAATAACTGGTTCTCTGTGTTCCAAGCACAATATTACAACTTTTCGAACTGTAAATCTTAGAGTGAATCCTCTTCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR TCA 72 bp | GACTTCGCACATCAAACCAACATGGCAGGGTCAAGCTaGCCTCCCGGCCACCCAGGGCCAAAGCCATACAGC | + |
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Preference number: 3 (lower is better) Translates to: DFAHQTNMAGSS*PPGHPGPKPYS Trigger: GCTGTATGGCTTTGGCCCTGGGTGGCCGGGAGGTCAGCTTGACCCTGCCATGTTGGTTTGATGTGCGAAGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR TCA 72 bp | CAAGGAGGTTCTGAAGGTTCCTGGCTACTTAGAGACTaGGCAAACCATGTTGGGGGCACTCTGGCAAGGTCC | + |
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Preference number: 3 (lower is better) Translates to: QGGSEGSWLLRD*ANHVGGTLARS Trigger: GGACCTTGCCAGAGTGCCCCCAACATGGTTTGCTCAGTCTCTAAGTAGCCAGGAACCTTCAGAACCTCCTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119896.2 |
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| 3UTR CCA 72 bp | AGGGGCCACACTTCTAAGTACAAAGGGCTGATACACTaGCTGCATGACTTCACACACAGAAATGTGGTAGCA | + |
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Preference number: 3 (lower is better) Translates to: RGHTSKYKGLIH*LHDFTHRNVVA Trigger: TGCTACCACATTTCTGTGTGTGAAGTCATGCAGCCAGTGTATCAGCCCTTTGTACTTAGAAGTGTGGCCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR CCA 72 bp | TACTTAGAGACTGAGCAAACCATGTTGGGGGCACTCTaGCAAGGTCCACCAGTATTCCCAAAAGATGAGTTG | + |
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Preference number: 3 (lower is better) Translates to: YLETEQTMLGAL*QGPPVFPKDEL Trigger: CAACTCATCTTTTGGGAATACTGGTGGACCTTGCCAGAGTGCCCCCAACATGGTTTGCTCAGTCTCTAAGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119896.2 |
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| 3UTR GCA 72 bp | CAAAATAGTAAAGGGGAAACCTCTAGTCAATCAGCGTaGTGCTACCAGTCAGCCTATAAGGCAAGGAGGTTC | + |
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Preference number: 3 (lower is better) Translates to: QNSKGETSSQSA*CYQSAYKARRF Trigger: GAACCTCCTTGCCTTATAGGCTGACTGGTAGCAGCACGCTGATTGACTAGAGGTTTCCCCTTTACTATTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119896.2 |
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| 3UTR-3UTR CAA 90 bp | AAGCCTGGTCATAGACACAATGATCCCAGTGACTTCGCACATCAAACCAACATGCGTGATTACAGCACATaGCAAGACTCCTTGCCTTTT | + |
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Preference number: 3 (lower is better) Translates to: KPGHRHNDPSDFAHQTNMRDYST*QDSLPF Trigger: AAAAGGCAAGGAGTCTTGCAATGTGCTGTAATCACG...CATGTTGGTTTGATGTGCGAAGTCACTGGGATCATTGTGTCTATGACCAGGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR-3UTR CAA 90 bp | TGGCAAGTTCACAGCAGTCACTTAGAAGGAGTTTGGTTTAGCTTTGGTAACATGTTTCCCTCCCTCAAATaGGAGAGGCCCTGTAATTTA | + |
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Preference number: 3 (lower is better) Translates to: WQVHSSHLEGVWFSFGNMFPSLK*ERPCNL Trigger: TAAATTACAGGGCCTCTCCAATTTGAGGGAGGGAAA...CATGTTACCAAAGCTAAACCAAACTCCTTCTAAGTGACTGCTGTGAACTTGCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR TCA 72 bp | GGCACTCTGGCAAGGTCCACCAGTATTCCCAAAAGATaGGTTGGAAAGTGTCTGATATTTCATTACACCATA | + |
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Preference number: 3 (lower is better) Translates to: GTLARSTSIPKR*VGKCLIFHYTI Trigger: TATGGTGTAATGAAATATCAGACACTTTCCAACTCATCTTTTGGGAATACTGGTGGACCTTGCCAGAGTGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119896.2 |
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| 3UTR CCA 72 bp | AGCACTCTGAATGTCCTATTTTACTGGTGTGATGTATaGGGTCTTTTTATGGTACAAACTCTGCCTGCCACA | + |
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Preference number: 3 (lower is better) Translates to: STLNVLFYWCDV*GLFMVQTLPAT Trigger: TGTGGCAGGCAGAGTTTGTACCATAAAAAGACCCCATACATCACACCAGTAAAATAGGACATTCAGAGTGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR-3UTR CAA 90 bp | TGGCAAGTTCACAGCAGTCACTTAGAAGGAGTTTGGTTTAGCTTTGGTAACATGACCACTGTAAATTCTTaGGAGAGCCCAAAGAATTCC | + |
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Preference number: 3 (lower is better) Translates to: WQVHSSHLEGVWFSFGNMTTVNS*ESPKNS Trigger: GGAATTCTTTGGGCTCTCCAAAGAATTTACAGTGGT...CATGTTACCAAAGCTAAACCAAACTCCTTCTAAGTGACTGCTGTGAACTTGCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR TCA 72 bp | TACAAACTCTGCCTGCCACAGATTTCACTGTCTTACTaGACACTTCGTAATCCTATGTGCAATGTTCAATGG | + |
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Preference number: 3 (lower is better) Translates to: YKLCLPQISLSY*TLRNPMCNVQW Trigger: CCATTGAACATTGCACATAGGATTACGAAGTGTTCAGTAAGACAGTGAAATCTGTGGCAGGCAGAGTTTGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR CCA 72 bp | TCTGGCAAGGTCCACCAGTATTCCCAAAAGATGAGTTaGAAAGTGTCTGATATTTCATTACACCATAAGCTC | + |
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Preference number: 3 (lower is better) Translates to: SGKVHQYSQKMS*KVSDISLHHKL Trigger: GAGCTTATGGTGTAATGAAATATCAGACACTTTCCAACTCATCTTTTGGGAATACTGGTGGACCTTGCCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119896.2 |
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| 3UTR-3UTR CAA 90 bp | TGCAAGTTTCCCTCCCTCAAATTGGAGAGGCCCTGTAATTTACAATTAACTTTGACATTGCAAGACTCCTaGCCTTTTAATAAAATGCCC | + |
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Preference number: 3 (lower is better) Translates to: CKFPSLKLERPCNLQLTLTLQDS*PFNKMP Trigger: GGGCATTTTATTAAAAGGCAAGGAGTCTTGCAATGT...CAAAGTTAATTGTAAATTACAGGGCCTCTCCAATTTGAGGGAGGGAAACTTGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR-3UTR CAA 90 bp | ACGGCAAATAGGAATATGAAATCAGTGATCATAGTGCTGCACTTTGCAAACTGTGTTGTAATATTGTGCTaGGAACACAGAGAACCAGTT | + |
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Preference number: 3 (lower is better) Translates to: TANRNMKSVIIVLHFANCVVILC*EHREPV Trigger: AACTGGTTCTCTGTGTTCCAAGCACAATATTACAAC...ACAGTTTGCAAAGTGCAGCACTATGATCACTGATTTCATATTCCTATTTGCCGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR-3UTR CAA 90 bp | TGCAAGTTTCCCTCCCTCAAATTGGAGAGGCCCTGTAATTTACAATTAACTTTGCGAAAAGTTGTAATATaGTGCTTGGAACACAGAGAA | + |
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Preference number: 3 (lower is better) Translates to: CKFPSLKLERPCNLQLTLRKVVI*CLEHRE Trigger: TTCTCTGTGTTCCAAGCACAATATTACAACTTTTCG...CAAAGTTAATTGTAAATTACAGGGCCTCTCCAATTTGAGGGAGGGAAACTTGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR TCA 72 bp | GTATCACTGAAAAGAACTGAACACTTGGAGATAAAATaGTTCTCCAGGCAGACAGTAAGGAGTAACATGACT | + |
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Preference number: 3 (lower is better) Translates to: VSLKRTEHLEIK*FSRQTVRSNMT Trigger: AGTCATGTTACTCCTTACTGTCTGCCTGGAGAATCATTTTATCTCCAAGTGTTCAGTTCTTTTCAGTGATAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR CCA 72 bp | GACTTTTCCTTATTGACACAAATATGTAGATGTAGTTaGACTGTCAGTAAACACAATCTACAGCATGGGAGG | + |
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Preference number: 3 (lower is better) Translates to: DFSLLTQICRCS*TVSKHNLQHGR Trigger: CCTCCCATGCTGTAGATTGTGTTTACTGACAGTCCAACTACATCTACATATTTGTGTCAATAAGGAAAAGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119896.2 |
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| 3UTR TCA 72 bp | TTCTCATTTCCCCATTCATTCCACATTACCTGGAAATaGCACTCAGGTAACAATGTATCACTGAAAAGAACT | + |
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Preference number: 3 (lower is better) Translates to: FSFPHSFHITWK*HSGNNVSLKRT Trigger: AGTTCTTTTCAGTGATACATTGTTACCTGAGTGTCATTTCCAGGTAATGTGGAATGAATGGGGAAATGAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR TCA 72 bp | CCTACCTCATATGTGTTACTGAAATGTACTTTGCTTTaGATCCCTTCTCATTTCCCCATTCATTCCACATTA | + |
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Preference number: 3 (lower is better) Translates to: PTSYVLLKCTLL*IPSHFPIHSTL Trigger: TAATGTGGAATGAATGGGGAAATGAGAAGGGATTCAAAGCAAAGTACATTTCAGTAACACATATGAGGTAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR TCA 72 bp | GAAATCAGTGATCATAGTGCTGCACTTTGCAAACTGTaGAGTCATTGCATACAAAATCAGAATCTGTACATA | + |
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Preference number: 3 (lower is better) Translates to: EISDHSAALCKL*SHCIQNQNLYI Trigger: TATGTACAGATTCTGATTTTGTATGCAATGACTTCACAGTTTGCAAAGTGCAGCACTATGATCACTGATTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR TCA 72 bp | ATAAAACAACAAAACAGCCTACCTCATATGTGTTACTaGAATGTACTTTGCTTTGAATCCCTTCTCATTTCC | + |
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Preference number: 3 (lower is better) Translates to: IKQQNSLPHMCY*NVLCFESLLIS Trigger: GGAAATGAGAAGGGATTCAAAGCAAAGTACATTTCAGTAACACATATGAGGTAGGCTGTTTTGTTGTTTTAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR TCA 72 bp | TGGAAAGTGTCTGATATTTCATTACACCATAAGCTCTaGTTATTAAAAAGTCTGGCTGTGCTTTTCTGGATA | + |
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Preference number: 3 (lower is better) Translates to: WKVSDISLHHKL*LLKSLAVLFWI Trigger: TATCCAGAAAAGCACAGCCAGACTTTTTAATAATCAGAGCTTATGGTGTAATGAAATATCAGACACTTTCCA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119896.2 |
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| 3UTR GCA 72 bp | GAGGCTATAAACATGACAAAATACCTACAAGCAATATaGTTCAATACTGAAAAGACACTTGGGACAAACTTA | + |
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Preference number: 3 (lower is better) Translates to: EAINMTKYLQAI*FNTEKTLGTNL Trigger: TAAGTTTGTCCCAAGTGTCTTTTCAGTATTGAAGCATATTGCTTGTAGGTATTTTGTCATGTTTATAGCCTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119896.2 |
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| CDS-3UTR TCA 90 bp | GAGGTTCTGAAGGTTCCTGGCTACTTAGAGACTGAGCAAACCATGTTGGGGGCACCGACAGGTTGCGGCTaGAATCCTGAAGGAGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: EVLKVPGYLETEQTMLGAPTGCG*NPEGAG Trigger: ACCTGCTCCTTCAGGATTTCAGCCGCAACCTGTCGG...TGCCCCCAACATGGTTTGCTCAGTCTCTAAGTAGCCAGGAACCTTCAGAACCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119896.2 |
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| CDS-3UTR CCA 90 bp | CACTCTGGCAAGGTCCACCAGTATTCCCAAAAGATGAGTTGGAAAGTGTCTGATCCTCGGACTGCTGCTTaGAGCCGCCTTTGGGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: HSGKVHQYSQKMSWKVSDPRTAA*SRLWEP Trigger: TGGCTCCCAAAGGCGGCTCCAAGCAGCAGTCCGAGG...ATCAGACACTTTCCAACTCATCTTTTGGGAATACTGGTGGACCTTGCCAGAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119896.2 |
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| CDS-3UTR CCA 90 bp | CACAGTAGAAATACTCTCTCACTTAATATTCTGCCTGTGGTGCGAAAGCCTGGTCCTCGGACTGCTGCTTaGAGCCGCCTTTGGGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: HSRNTLSLNILPVVRKPGPRTAA*SRLWEP Trigger: TGGCTCCCAAAGGCGGCTCCAAGCAGCAGTCCGAGG...ACCAGGCTTTCGCACCACAGGCAGAATATTAAGTGAGAGAGTATTTCTACTGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| CDS-3UTR GCA 90 bp | GCACATTGCAAGACTCCTTGCCTTTTAATAAAATGCCCTGGTACTCTGAGTTTCTCCTCCTCGGACTGCTaGTTGGAGCCGCCTTTGGGA | + |
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Preference number: 4 (lower is better) Translates to: AHCKTPCLLIKCPGTLSFSSSDC*LEPPLG Trigger: TCCCAAAGGCGGCTCCAAGCAGCAGTCCGAGGAGGA...GAAACTCAGAGTACCAGGGCATTTTATTAAAAGGCAAGGAGTCTTGCAATGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| CDS-3UTR GCA 90 bp | AGAACCAGTGAAGACAGCACATTTACTCTGACTTTGACTCCTTGTAGACAGGAATCCTCCTCGGACTGCTaGTTGGAGCCGCCTTTGGGA | + |
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Preference number: 4 (lower is better) Translates to: RTSEDSTFTLTLTPCRQESSSDC*LEPPLG Trigger: TCCCAAAGGCGGCTCCAAGCAGCAGTCCGAGGAGGA...TTCCTGTCTACAAGGAGTCAAAGTCAGAGTAAATGTGCTGTCTTCACTGGTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119896.2 |
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| CDS-3UTR TCA 90 bp | TGCAAGTTTCCCTCCCTCAAATTGGAGAGGCCCTGTAATTTACAATTAACTTTGCCGACAGGTTGCGGCTaGAATCCTGAAGGAGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: CKFPSLKLERPCNLQLTLPTGCG*NPEGAG Trigger: ACCTGCTCCTTCAGGATTTCAGCCGCAACCTGTCGG...CAAAGTTAATTGTAAATTACAGGGCCTCTCCAATTTGAGGGAGGGAAACTTGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| CDS-3UTR GCA 90 bp | GAGGTTCTGAAGGTTCCTGGCTACTTAGAGACTGAGCAAACCATGTTGGGGGCAAGGCTACTAAGTAAGTaGTTACTAAGGTCATCACAC | + |
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Preference number: 4 (lower is better) Translates to: EVLKVPGYLETEQTMLGARLLSK*LLRSSH Trigger: GTGTGATGACCTTAGTAAGCACTTACTTAGTAGCCT...TGCCCCCAACATGGTTTGCTCAGTCTCTAAGTAGCCAGGAACCTTCAGAACCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119896.2 |
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| CDS-3UTR GCA 90 bp | CACAGTAGAAATACTCTCTCACTTAATATTCTGCCTGTGGTGCGAAAGCCTGGTATCCTCCCTCTTCTGTaGCACTTTGTGCTTCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: HSRNTLSLNILPVVRKPGILPLL*HFVLQN Trigger: GTTCTGAAGCACAAAGTGGCACAGAAGAGGGAGGAT...ACCAGGCTTTCGCACCACAGGCAGAATATTAAGTGAGAGAGTATTTCTACTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| 3UTR CAA 72 bp | GACAGAACCAGTGAAGACAGCACATTTACTCTGACTTaGACTCCTTGTAGACAGGAAGGTAGACGAAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: DRTSEDSTFTLT*TPCRQEGRRSQ Trigger: CTGACTTCGTCTACCTTCCTGTCTACAAGGAGTCAAAGTCAGAGTAAATGTGCTGTCTTCACTGGTTCTGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119896.2 |
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| CDS-3UTR GCA 90 bp | CAGAAATGTGGTAGCACAGAGTTAGAGAACATGTTCAGAGTTAAAAACAAAGACAGGCTACTAAGTAAGTaGTTACTAAGGTCATCACAC | + |
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Preference number: 4 (lower is better) Translates to: QKCGSTELENMFRVKNKDRLLSK*LLRSSH Trigger: GTGTGATGACCTTAGTAAGCACTTACTTAGTAGCCT...GTCTTTGTTTTTAACTCTGAACATGTTCTCTAACTCTGTGCTACCACATTTCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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| CDS-3UTR CAA 90 bp | CACTCTGGCAAGGTCCACCAGTATTCCCAAAAGATGAGTTGGAAAGTGTCTGATTCCTCGGACTGCTGCTaGGAGCCGCCTTTGGGAGCC | + |
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Preference number: 5 (lower is better) Translates to: HSGKVHQYSQKMSWKVSDSSDCC*EPPLGA Trigger: GGCTCCCAAAGGCGGCTCCAAGCAGCAGTCCGAGGA...ATCAGACACTTTCCAACTCATCTTTTGGGAATACTGGTGGACCTTGCCAGAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119896.2 |
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| CDS-3UTR CAA 90 bp | GACTCCTTGCCTTTTAATAAAATGCCCTGGTACTCTGAGTTTCCCTTTCAATTCTCCTCGGACTGCTGCTaGGAGCCGCCTTTGGGAGCC | + |
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Preference number: 5 (lower is better) Translates to: DSLPFNKMPWYSEFPFQFSSDCC*EPPLGA Trigger: GGCTCCCAAAGGCGGCTCCAAGCAGCAGTCCGAGGA...GAATTGAAAGGGAAACTCAGAGTACCAGGGCATTTTATTAAAAGGCAAGGAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029414.12 |
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