Pregenerated sensors for SSR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041355Ensembl transcript IDs: ENSMUST00000035785.9, ENSMUST00000192495.6, ENSMUST00000192688.6, ENSMUST00000193069.2, ENSMUST00000193934.6, ENSMUST00000194604.2, ENSMUST00000195014.6
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCCCTGAAGCTGTGGCTAAGGGCTGTCCTGTCTATATGGCTTCAGTaGCAACGGGGAGGCCCTCTCCAACTTCCAGGCCTGCCCCTCGCA | + |
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Preference number: 1 (lower is better) Translates to: ALKLWLRAVLSIWLQ*QRGGPLQLPGLPLA Trigger: TGCGAGGGGCAGGCCTGGAAGTTGGAGAGGGCCTCCCCGTTGTCACTGAAGCCATATAGACAGGACAGCCCTTAGCCACAGCTTCAGGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| 3UTR CCA 90 bp | GGACCCCAAAGAGTTCACATTGCTAATAATATACCAACAGCACCTTaGTGGGACCCTCAAGCCCTGAAGCTGTGGCTAAGGGCTGTCCTG | + |
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Preference number: 1 (lower is better) Translates to: GPQRVHIANNIPTAP*WDPQALKLWLRAVL Trigger: CAGGACAGCCCTTAGCCACAGCTTCAGGGCTTGAGGGTCCCACCAAGGTGCTGTTGGTATATTATTAGCAATGTGAACTCTTTGGGGTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| 3UTR-3UTR CCA 90 bp | ACAGCACCTTGGTGGGACCCTCAAGCCCTGAAGCTGTGGCTAAGGGCTGTCCTGAAAAACCTGGTTTCTTaGGAGAGAAGGGCCGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: TAPWWDPQALKLWLRAVLKNLVS*ERRAEE Trigger: TTCCTCGGCCCTTCTCTCCCAAGAAACCAGGTTTTT...CAGGACAGCCCTTAGCCACAGCTTCAGGGCTTGAGGGTCCCACCAAGGTGCTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| 3UTR-3UTR CCA 90 bp | CATTTGGTAAGTGCCCCTAATCCAGGCAGGGCCTGTGTAGCCCCCATAATCCTCCCAAAGGGCCCCTCCTaGACCCCAAAGAGTTCACAT | + |
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Preference number: 2 (lower is better) Translates to: HLVSAPNPGRACVAPIILPKGPS*TPKSSH Trigger: ATGTGAACTCTTTGGGGTCCAGGAGGGGCCCTTTGG...GAGGATTATGGGGGCTACACAGGCCCTGCCTGGATTAGGGGCACTTACCAAATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| 3UTR-3UTR TCA 90 bp | CCAACTTCCAGGCCTGCCCCTCGCATTCTGGTTGAGTTCGGGGTAAGATTCAGGCCAAGAGAACACTTTTaGCACCCTCTGGAGTCTAGA | + |
|
Preference number: 2 (lower is better) Translates to: PTSRPAPRILVEFGVRFRPREHF*HPLESR Trigger: TCTAGACTCCAGAGGGTGTCAAAAGTGTTCTCTTGG...CCTGAATCTTACCCCGAACTCAACCAGAATGCGAGGGGCAGGCCTGGAAGTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| 3UTR CAA 90 bp | CAGACAGTATCCAAAGGGCCCCTCCTGGACCCCAAAGAGTTCACATaGCTAATAATATACCAACAGCACCTTGGTGGGACCCTCAAGCCC | + |
|
Preference number: 2 (lower is better) Translates to: QTVSKGPLLDPKEFT*LIIYQQHLGGTLKP Trigger: GGGCTTGAGGGTCCCACCAAGGTGCTGTTGGTATATTATTAGCAATGTGAACTCTTTGGGGTCCAGGAGGGGCCCTTTGGATACTGTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| 3UTR-3UTR CCA 90 bp | ACTTCCAGGCCTGCCCCTCGCATTCTGGTTGAGTTCGGGGTAAGATTCAGGACAAAAAACCTGGTTTCTTaGGAGAGAAGGGCCGAGGAA | + |
|
Preference number: 2 (lower is better) Translates to: TSRPAPRILVEFGVRFRTKNLVS*ERRAEE Trigger: TTCCTCGGCCCTTCTCTCCCAAGAAACCAGGTTTTT...TGTCCTGAATCTTACCCCGAACTCAACCAGAATGCGAGGGGCAGGCCTGGAAGT 52% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| 3UTR-3UTR CCA 90 bp | CCCCTCCTGGACCCCAAAGAGTTCACATTGCTAATAATATACCAACAGCACCTTCAAGCCCTGAAGCTGTaGCTAAGGGCTGTCCTGTCT | + |
|
Preference number: 2 (lower is better) Translates to: PLLDPKEFTLLIIYQQHLQALKL*LRAVLS Trigger: AGACAGGACAGCCCTTAGCCACAGCTTCAGGGCTTG...AAGGTGCTGTTGGTATATTATTAGCAATGTGAACTCTTTGGGGTCCAGGAGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| 3UTR-3UTR TCA 90 bp | GCCCCTCCTGGACCCCAAAGAGTTCACATTGCTAATAATATACCAACAGCACCTCCAAGAGAACACTTTTaGCACCCTCTGGAGTCTAGA | + |
|
Preference number: 2 (lower is better) Translates to: APPGPQRVHIANNIPTAPPREHF*HPLESR Trigger: TCTAGACTCCAGAGGGTGTCAAAAGTGTTCTCTTGG...AGGTGCTGTTGGTATATTATTAGCAATGTGAACTCTTTGGGGTCCAGGAGGGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| 3UTR TCA 72 bp | CTGTGGCTAAGGGCTGTCCTGTCTATATGGCTTCAGTaGCAACGGGGAGGCCCTCTCCAACTTCCAGGCCTG | + |
|
Preference number: 3 (lower is better) Translates to: LWLRAVLSIWLQ*QRGGPLQLPGL Trigger: CAGGCCTGGAAGTTGGAGAGGGCCTCCCCGTTGTCACTGAAGCCATATAGACAGGACAGCCCTTAGCCACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| 3UTR CCA 72 bp | GTTCACATTGCTAATAATATACCAACAGCACCTTGGTaGGACCCTCAAGCCCTGAAGCTGTGGCTAAGGGCT | + |
|
Preference number: 3 (lower is better) Translates to: VHIANNIPTAPW*DPQALKLWLRA Trigger: AGCCCTTAGCCACAGCTTCAGGGCTTGAGGGTCCCACCAAGGTGCTGTTGGTATATTATTAGCAATGTGAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| 3UTR CCA 72 bp | AGAGTTCACATTGCTAATAATATACCAACAGCACCTTaGTGGGACCCTCAAGCCCTGAAGCTGTGGCTAAGG | + |
|
Preference number: 3 (lower is better) Translates to: RVHIANNIPTAP*WDPQALKLWLR Trigger: CCTTAGCCACAGCTTCAGGGCTTGAGGGTCCCACCAAGGTGCTGTTGGTATATTATTAGCAATGTGAACTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR CCA 90 bp | GGCTTCAGTGACAACGGGGAGGCCCTCTCCAACTTCCAGGCCTGCCCCTCGCATGTCCAGGGGCGCTGGTaGAGCCAATCACAACAGGTC | + |
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Preference number: 4 (lower is better) Translates to: GFSDNGEALSNFQACPSHVQGRW*SQSQQV Trigger: GACCTGTTGTGATTGGCTCCACCAGCGCCCCTGGAC...ATGCGAGGGGCAGGCCTGGAAGTTGGAGAGGGCCTCCCCGTTGTCACTGAAGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR TCA 90 bp | GGCTTCAGTGACAACGGGGAGGCCCTCTCCAACTTCCAGGCCTGCCCCTCGCATCTGTCAAACTCCCGCTaGGCGAGGATTCCTCCCTGT | + |
|
Preference number: 4 (lower is better) Translates to: GFSDNGEALSNFQACPSHLSNSR*ARIPPC Trigger: ACAGGGAGGAATCCTCGCTCAGCGGGAGTTTGACAG...ATGCGAGGGGCAGGCCTGGAAGTTGGAGAGGGCCTCCCCGTTGTCACTGAAGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR GCA 90 bp | GGCTTCAGTGACAACGGGGAGGCCCTCTCCAACTTCCAGGCCTGCCCCTCGCATGCATACCGGAGACAATaGCGAAGTCTTCTGGAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: GFSDNGEALSNFQACPSHAYRRQ*RSLLEG Trigger: TCCCTCCAGAAGACTTCGGCATTGTCTCCGGTATGC...ATGCGAGGGGCAGGCCTGGAAGTTGGAGAGGGCCTCCCCGTTGTCACTGAAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR CCA 90 bp | ACAGCACCTTGGTGGGACCCTCAAGCCCTGAAGCTGTGGCTAAGGGCTGTCCTGCGCAGGACAACTGTGTaGGAGACATTGCTAGCGGGG | + |
|
Preference number: 4 (lower is better) Translates to: TAPWWDPQALKLWLRAVLRRTTV*ETLLAG Trigger: CCCCGCTAGCAATGTCTCCCACACAGTTGTCCTGCG...CAGGACAGCCCTTAGCCACAGCTTCAGGGCTTGAGGGTCCCACCAAGGTGCTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR TCA 90 bp | GGCTTCAGTGACAACGGGGAGGCCCTCTCCAACTTCCAGGCCTGCCCCTCGCATCCACAGCGTATCTGTTaGGCAATGATTTGGAGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: GFSDNGEALSNFQACPSHPQRIC*AMIWRP Trigger: TGGCCTCCAAATCATTGCTCAACAGATACGCTGTGG...ATGCGAGGGGCAGGCCTGGAAGTTGGAGAGGGCCTCCCCGTTGTCACTGAAGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR CCA 90 bp | ACAGCACCTTGGTGGGACCCTCAAGCCCTGAAGCTGTGGCTAAGGGCTGTCCTGTGGAGGCCAAAAGCCTaGCTCCTTCTTCTGCTTGAC | + |
|
Preference number: 4 (lower is better) Translates to: TAPWWDPQALKLWLRAVLWRPKA*LLLLLD Trigger: GTCAAGCAGAAGAAGGAGCCAGGCTTTTGGCCTCCA...CAGGACAGCCCTTAGCCACAGCTTCAGGGCTTGAGGGTCCCACCAAGGTGCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR CCA 90 bp | TCTCCAACTTCCAGGCCTGCCCCTCGCATTCTGGTTGAGTTCGGGGTAAGATTCCGTACTTCCTCTTGCTaGAATACCACAGGAGCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: SPTSRPAPRILVEFGVRFRTSSC*NTTGAG Trigger: CCCTGCTCCTGTGGTATTCCAGCAAGAGGAAGTACG...GAATCTTACCCCGAACTCAACCAGAATGCGAGGGGCAGGCCTGGAAGTTGGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR CCA 90 bp | ACTTCCAGGCCTGCCCCTCGCATTCTGGTTGAGTTCGGGGTAAGATTCAGGACACGTACTTCCTCTTGCTaGAATACCACAGGAGCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: TSRPAPRILVEFGVRFRTRTSSC*NTTGAG Trigger: CCCTGCTCCTGTGGTATTCCAGCAAGAGGAAGTACG...TGTCCTGAATCTTACCCCGAACTCAACCAGAATGCGAGGGGCAGGCCTGGAAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR TCA 90 bp | CATTTGGTAAGTGCCCCTAATCCAGGCAGGGCCTGTGTAGCCCCCATAATCCTCCTTCTTCTGCTTGACTaGCGGCTAACAGAGCCAACA | + |
|
Preference number: 4 (lower is better) Translates to: HLVSAPNPGRACVAPIILLLLLD*RLTEPT Trigger: TGTTGGCTCTGTTAGCCGTCAGTCAAGCAGAAGAAG...GAGGATTATGGGGGCTACACAGGCCCTGCCTGGATTAGGGGCACTTACCAAATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR CCA 90 bp | GAGTTCACATTGCTAATAATATACCAACAGCACCTTGGTGGGACCCTCAAGCCCGTCCAGGGGCGCTGGTaGAGCCAATCACAACAGGTC | + |
|
Preference number: 4 (lower is better) Translates to: EFTLLIIYQQHLGGTLKPVQGRW*SQSQQV Trigger: GACCTGTTGTGATTGGCTCCACCAGCGCCCCTGGAC...GGGCTTGAGGGTCCCACCAAGGTGCTGTTGGTATATTATTAGCAATGTGAACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR TCA 90 bp | CCAACTTCCAGGCCTGCCCCTCGCATTCTGGTTGAGTTCGGGGTAAGATTCAGGGTATCTGTTGAGCAATaGTTTGGAGGCCAAAAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: PTSRPAPRILVEFGVRFRVSVEQ*FGGQKP Trigger: AGGCTTTTGGCCTCCAAATCATTGCTCAACAGATAC...CCTGAATCTTACCCCGAACTCAACCAGAATGCGAGGGGCAGGCCTGGAAGTTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR TCA 90 bp | GAGTTCACATTGCTAATAATATACCAACAGCACCTTGGTGGGACCCTCAAGCCCCTGTCAAACTCCCGCTaGGCGAGGATTCCTCCCTGT | + |
|
Preference number: 4 (lower is better) Translates to: EFTLLIIYQQHLGGTLKPLSNSR*ARIPPC Trigger: ACAGGGAGGAATCCTCGCTCAGCGGGAGTTTGACAG...GGGCTTGAGGGTCCCACCAAGGTGCTGTTGGTATATTATTAGCAATGTGAACTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR CCA 90 bp | TCTCCAACTTCCAGGCCTGCCCCTCGCATTCTGGTTGAGTTCGGGGTAAGATTCAATGCCGAAGTCTTCTaGAGGGAAGGAATCGTCAGA | + |
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Preference number: 4 (lower is better) Translates to: SPTSRPAPRILVEFGVRFNAEVF*REGIVR Trigger: TCTGACGATTCCTTCCCTCCAGAAGACTTCGGCATT...GAATCTTACCCCGAACTCAACCAGAATGCGAGGGGCAGGCCTGGAAGTTGGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR GCA 90 bp | CCCCTCCTGGACCCCAAAGAGTTCACATTGCTAATAATATACCAACAGCACCTTCATGACCCCAAAGGCTaGCCAGTCCAGAAAATGGGG | + |
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Preference number: 4 (lower is better) Translates to: PLLDPKEFTLLIIYQQHLHDPKG*PVQKMG Trigger: CCCCATTTTCTGGACTGGGCAGCCTTTGGGGTCATG...AAGGTGCTGTTGGTATATTATTAGCAATGTGAACTCTTTGGGGTCCAGGAGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR GCA 90 bp | CCCCTCCTGGACCCCAAAGAGTTCACATTGCTAATAATATACCAACAGCACCTTGCATACCGGAGACAATaGCGAAGTCTTCTGGAGGGA | + |
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Preference number: 4 (lower is better) Translates to: PLLDPKEFTLLIIYQQHLAYRRQ*RSLLEG Trigger: TCCCTCCAGAAGACTTCGGCATTGTCTCCGGTATGC...AAGGTGCTGTTGGTATATTATTAGCAATGTGAACTCTTTGGGGTCCAGGAGGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR CCA 90 bp | CCCCTCCTGGACCCCAAAGAGTTCACATTGCTAATAATATACCAACAGCACCTTTGGAGGCCAAAAGCCTaGCTCCTTCTTCTGCTTGAC | + |
|
Preference number: 4 (lower is better) Translates to: PLLDPKEFTLLIIYQQHLWRPKA*LLLLLD Trigger: GTCAAGCAGAAGAAGGAGCCAGGCTTTTGGCCTCCA...AAGGTGCTGTTGGTATATTATTAGCAATGTGAACTCTTTGGGGTCCAGGAGGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR TCA 90 bp | CCCCTCCTGGACCCCAAAGAGTTCACATTGCTAATAATATACCAACAGCACCTTCTTCTTCTGCTTGACTaGCGGCTAACAGAGCCAACA | + |
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Preference number: 4 (lower is better) Translates to: PLLDPKEFTLLIIYQQHLLLLLD*RLTEPT Trigger: TGTTGGCTCTGTTAGCCGTCAGTCAAGCAGAAGAAG...AAGGTGCTGTTGGTATATTATTAGCAATGTGAACTCTTTGGGGTCCAGGAGGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR TCA 90 bp | GAGTTCACATTGCTAATAATATACCAACAGCACCTTGGTGGGACCCTCAAGCCCGTATCTGTTGAGCAATaGTTTGGAGGCCAAAAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: EFTLLIIYQQHLGGTLKPVSVEQ*FGGQKP Trigger: AGGCTTTTGGCCTCCAAATCATTGCTCAACAGATAC...GGGCTTGAGGGTCCCACCAAGGTGCTGTTGGTATATTATTAGCAATGTGAACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR CCA 90 bp | CCCCTCCTGGACCCCAAAGAGTTCACATTGCTAATAATATACCAACAGCACCTTAATGCCGAAGTCTTCTaGAGGGAAGGAATCGTCAGA | + |
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Preference number: 4 (lower is better) Translates to: PLLDPKEFTLLIIYQQHLNAEVF*REGIVR Trigger: TCTGACGATTCCTTCCCTCCAGAAGACTTCGGCATT...AAGGTGCTGTTGGTATATTATTAGCAATGTGAACTCTTTGGGGTCCAGGAGGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR CAA 90 bp | GGCTTCAGTGACAACGGGGAGGCCCTCTCCAACTTCCAGGCCTGCCCCTCGCATCAGTTCTTCTTGGGTTaGGGAGTATCGTACTTCCTC | + |
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Preference number: 5 (lower is better) Translates to: GFSDNGEALSNFQACPSHQFFLG*GVSYFL Trigger: GAGGAAGTACGATACTCCCAAACCCAAGAAGAACTG...ATGCGAGGGGCAGGCCTGGAAGTTGGAGAGGGCCTCCCCGTTGTCACTGAAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR CAA 90 bp | ACAGCACCTTGGTGGGACCCTCAAGCCCTGAAGCTGTGGCTAAGGGCTGTCCTGCGGTCCCATTTGACATaGAGCATACCGGAGACAATG | + |
|
Preference number: 5 (lower is better) Translates to: TAPWWDPQALKLWLRAVLRSHLT*SIPETM Trigger: CATTGTCTCCGGTATGCTCAATGTCAAATGGGACCG...CAGGACAGCCCTTAGCCACAGCTTCAGGGCTTGAGGGTCCCACCAAGGTGCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS TCA 90 bp | TTGAGCAATGATTTGGAGGCCAAAAGCCTGGCTCCTTCTTCTGCTTaGCTGACGGCTAACAGAGCCAACACCACAACCGCCAGCAGCCTC | + |
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Preference number: 5 (lower is better) Translates to: LSNDLEAKSLAPSSA*LTANRANTTTASSL Trigger: GAGGCTGCTGGCGGTTGTGGTGTTGGCTCTGTTAGCCGTCAGTCAAGCAGAAGAAGGAGCCAGGCTTTTGGCCTCCAAATCATTGCTCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000035785.9 ENSMUST00000192495.6 ENSMUST00000192688.6 ENSMUST00000193069.2 ENSMUST00000193934.6 ENSMUST00000194604.2 ENSMUST00000195014.6 |
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| CDS TCA 90 bp | CTGCAGGGTCAGGTCCCTCCCTTCCACAGCGTATCTGTTGAGCAATaGTTTGGAGGCCAAAAGCCTGGCTCCTTCTTCTGCTTGACTGAC | + |
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Preference number: 5 (lower is better) Translates to: LQGQVPPFHSVSVEQ*FGGQKPGSFFCLTD Trigger: GTCAGTCAAGCAGAAGAAGGAGCCAGGCTTTTGGCCTCCAAATCATTGCTCAACAGATACGCTGTGGAAGGGAGGGACCTGACCCTGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000035785.9 ENSMUST00000192495.6 ENSMUST00000192688.6 ENSMUST00000193934.6 ENSMUST00000195014.6 |
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| CDS-3UTR CAA 90 bp | ACTTCCAGGCCTGCCCCTCGCATTCTGGTTGAGTTCGGGGTAAGATTCAGGACAGCAATCCGGTCCCATTaGACATTGAGCATACCGGAG | + |
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Preference number: 5 (lower is better) Translates to: TSRPAPRILVEFGVRFRTAIRSH*TLSIPE Trigger: CTCCGGTATGCTCAATGTCAAATGGGACCGGATTGC...TGTCCTGAATCTTACCCCGAACTCAACCAGAATGCGAGGGGCAGGCCTGGAAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS-3UTR CAA 90 bp | CATTTGGTAAGTGCCCCTAATCCAGGCAGGGCCTGTGTAGCCCCCATAATCCTCCGGTCCCATTTGACATaGAGCATACCGGAGACAATG | + |
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Preference number: 5 (lower is better) Translates to: HLVSAPNPGRACVAPIILRSHLT*SIPETM Trigger: CATTGTCTCCGGTATGCTCAATGTCAAATGGGACCG...GAGGATTATGGGGGCTACACAGGCCCTGCCTGGATTAGGGGCACTTACCAAATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS TCA 90 bp | TGTTATACTGCAGGGTCAGGTCCCTCCCTTCCACAGCGTATCTGTTaGGCAATGATTTGGAGGCCAAAAGCCTGGCTCCTTCTTCTGCTT | + |
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Preference number: 5 (lower is better) Translates to: CYTAGSGPSLPQRIC*AMIWRPKAWLLLLL Trigger: AAGCAGAAGAAGGAGCCAGGCTTTTGGCCTCCAAATCATTGCTCAACAGATACGCTGTGGAAGGGAGGGACCTGACCCTGCAGTATAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000035785.9 ENSMUST00000192495.6 ENSMUST00000192688.6 ENSMUST00000193934.6 ENSMUST00000195014.6 |
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| CDS-3UTR CAA 90 bp | CCCCTCCTGGACCCCAAAGAGTTCACATTGCTAATAATATACCAACAGCACCTTGCAATCCGGTCCCATTaGACATTGAGCATACCGGAG | + |
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Preference number: 5 (lower is better) Translates to: PLLDPKEFTLLIIYQQHLAIRSH*TLSIPE Trigger: CTCCGGTATGCTCAATGTCAAATGGGACCGGATTGC...AAGGTGCTGTTGGTATATTATTAGCAATGTGAACTCTTTGGGGTCCAGGAGGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035785.9 ENSMUST00000195014.6 |
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| CDS CCA 72 bp | CCCGCTGAGCGAGGATTCCTCCCTGTCCAGGGGCGCTaGTGGAGCCAATCACAACAGGTCCATCCTCCTGGG | + |
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Preference number: 6 (lower is better) Translates to: PAERGFLPVQGR*WSQSQQVHPPG Trigger: CCCAGGAGGATGGACCTGTTGTGATTGGCTCCACCAGCGCCCCTGGACAGGGAGGAATCCTCGCTCAGCGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000035785.9 ENSMUST00000192495.6 ENSMUST00000193934.6 ENSMUST00000195014.6 |
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| CDS CCA 72 bp | GCTGAGCGAGGATTCCTCCCTGTCCAGGGGCGCTGGTaGAGCCAATCACAACAGGTCCATCCTCCTGGGCCA | + |
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Preference number: 6 (lower is better) Translates to: AERGFLPVQGRW*SQSQQVHPPGP Trigger: TGGCCCAGGAGGATGGACCTGTTGTGATTGGCTCCACCAGCGCCCCTGGACAGGGAGGAATCCTCGCTCAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000035785.9 ENSMUST00000192495.6 ENSMUST00000193934.6 ENSMUST00000195014.6 |
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| CDS TCA 72 bp | GCAGGGTCAGGTCCCTCCCTTCCACAGCGTATCTGTTaGGCAATGATTTGGAGGCCAAAAGCCTGGCTCCTT | + |
|
Preference number: 6 (lower is better) Translates to: AGSGPSLPQRIC*AMIWRPKAWLL Trigger: AAGGAGCCAGGCTTTTGGCCTCCAAATCATTGCTCAACAGATACGCTGTGGAAGGGAGGGACCTGACCCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000035785.9 ENSMUST00000192495.6 ENSMUST00000192688.6 ENSMUST00000193934.6 ENSMUST00000195014.6 |
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| CDS GCA 72 bp | CTAGCGCTGGCCCAAGGGTTAAGGATGAAGAAGAGATaGCGGAAGCCGGAGACAATGCCGAAGTCTTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: LALAQGLRMKKR*RKPETMPKSSG Trigger: TCCAGAAGACTTCGGCATTGTCTCCGGCTTCCGGCATCTCTTCTTCATCCTTAACCCTTGGGCCAGCGCTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192495.6 |
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| CDS CAA 72 bp | TGCAGGGTCAGGTCCCTCCCTTCCACAGCGTATCTGTaGAGCAATGATTTGGAGGCCAAAAGCCTGGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: CRVRSLPSTAYL*SNDLEAKSLAP Trigger: AGGAGCCAGGCTTTTGGCCTCCAAATCATTGCTCAACAGATACGCTGTGGAAGGGAGGGACCTGACCCTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000035785.9 ENSMUST00000192495.6 ENSMUST00000192688.6 ENSMUST00000193934.6 ENSMUST00000195014.6 |
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| CDS CAA 90 bp | GTGTGGGAGACATTGCTAGCGGGGGCAATCCGGTCCCATTTGACATaGAGCATACCGGAGACAATGCCGAAGTCTTCTGGAGGGAAGGAA | + |
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Preference number: 6 (lower is better) Translates to: VWETLLAGAIRSHLT*SIPETMPKSSGGKE Trigger: TTCCTTCCCTCCAGAAGACTTCGGCATTGTCTCCGGTATGCTCAATGTCAAATGGGACCGGATTGCCCCCGCTAGCAATGTCTCCCACAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035785.9 ENSMUST00000192688.6 ENSMUST00000195014.6 |
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| CDS CAA 90 bp | ACAACTGTGTGGGAGACATTGCTAGCGGGGGCAATCCGGTCCCATTaGACATTGAGCATACCGGAGACAATGCCGAAGTCTTCTGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: TTVWETLLAGAIRSH*TLSIPETMPKSSGG Trigger: CCCTCCAGAAGACTTCGGCATTGTCTCCGGTATGCTCAATGTCAAATGGGACCGGATTGCCCCCGCTAGCAATGTCTCCCACACAGTTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035785.9 ENSMUST00000192688.6 ENSMUST00000195014.6 |
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| CDS TCA 72 bp | CAGGTCCCTCCCTTCCACAGCGTATCTGTTGAGCAATaGTTTGGAGGCCAAAAGCCTGGCTCCTTCTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: QVPPFHSVSVEQ*FGGQKPGSFFC Trigger: GCAGAAGAAGGAGCCAGGCTTTTGGCCTCCAAATCATTGCTCAACAGATACGCTGTGGAAGGGAGGGACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000035785.9 ENSMUST00000192495.6 ENSMUST00000192688.6 ENSMUST00000193934.6 ENSMUST00000195014.6 |
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| CDS CAA 72 bp | TGGGAGACATTGCTAGCGGGGGCAATCCGGTCCCATTaGACATTGAGCATACCGGAGACAATGCCGAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: WETLLAGAIRSH*TLSIPETMPKS Trigger: AGACTTCGGCATTGTCTCCGGTATGCTCAATGTCAAATGGGACCGGATTGCCCCCGCTAGCAATGTCTCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035785.9 ENSMUST00000192688.6 ENSMUST00000195014.6 |
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| CDS CAA 72 bp | GCTTTGAGAGGACGCAGGACAACTGTGTGGGAGACATaGCTAGCGCTGGCCCAAGGGTTAAGGATGAAGAAG | + |
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Preference number: 6 (lower is better) Translates to: ALRGRRTTVWET*LALAQGLRMKK Trigger: CTTCTTCATCCTTAACCCTTGGGCCAGCGCTAGCAATGTCTCCCACACAGTTGTCCTGCGTCCTCTCAAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192495.6 |
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| CDS CCA 72 bp | TCTTCTTGGGTTTGGGAGTATCGTACTTCCTCTTGCTaGAATACCACAGGAGCAGGGGGATGCCTATGGAGG | + |
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Preference number: 6 (lower is better) Translates to: SSWVWEYRTSSC*NTTGAGGCLWR Trigger: CCTCCATAGGCATCCCCCTGCTCCTGTGGTATTCCAGCAAGAGGAAGTACGATACTCCCAAACCCAAGAAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000035785.9 ENSMUST00000192495.6 ENSMUST00000193934.6 ENSMUST00000195014.6 |
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| CDS CAA 72 bp | ACATTGCTAGCGGGGGCAATCCGGTCCCATTTGACATaGAGCATACCGGAGACAATGCCGAAGTCTTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: TLLAGAIRSHLT*SIPETMPKSSG Trigger: TCCAGAAGACTTCGGCATTGTCTCCGGTATGCTCAATGTCAAATGGGACCGGATTGCCCCCGCTAGCAATGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035785.9 ENSMUST00000192688.6 ENSMUST00000195014.6 |
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| CDS CAA 90 bp | ATGTTATACTGCAGGGTCAGGTCCCTCCCTTCCACAGCGTATCTGTaGAGCAATGATTTGGAGGCCAAAAGCCTGGCTCCTTCTTCTGCT | + |
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Preference number: 6 (lower is better) Translates to: MLYCRVRSLPSTAYL*SNDLEAKSLAPSSA Trigger: AGCAGAAGAAGGAGCCAGGCTTTTGGCCTCCAAATCATTGCTCAACAGATACGCTGTGGAAGGGAGGGACCTGACCCTGCAGTATAACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000035785.9 ENSMUST00000192495.6 ENSMUST00000192688.6 ENSMUST00000193934.6 ENSMUST00000195014.6 |
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| CDS CAA 72 bp | CAGTTCTTCTTGGGTTTGGGAGTATCGTACTTCCTCTaGCTGGAATACCACAGGAGCAGGGGGATGCCTATG | + |
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Preference number: 6 (lower is better) Translates to: QFFLGLGVSYFL*LEYHRSRGMPM Trigger: CATAGGCATCCCCCTGCTCCTGTGGTATTCCAGCAAGAGGAAGTACGATACTCCCAAACCCAAGAAGAACTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000035785.9 ENSMUST00000192495.6 ENSMUST00000193934.6 ENSMUST00000195014.6 |
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