Pregenerated sensors for SSNA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026966Ensembl transcript IDs: ENSMUST00000028342.7
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGAGAGGCCCCTCATGGAGCTGCTCAGGGTCCCCACAGCACATGTaGGTACGGAGCTGGGAACACCTCTTCCATTGGACTGTCCTAGGG | + |
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Preference number: 1 (lower is better) Translates to: ERGPSWSCSGSPQHM*VRSWEHLFHWTVLG Trigger: CCCTAGGACAGTCCAATGGAAGAGGTGTTCCCAGCTCCGTACTCACATGTGCTGTGGGGACCCTGAGCAGCTCCATGAGGGGCCTCTCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| 3UTR CCA 90 bp | CCTTTATTGAAACACCAGAGGCCATGGGGATGGGCCCTAAGGTTTTaGTTCTGGAGTCAAGATTCTTTCTTCAACATGTCTGGCCTGGGG | + |
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Preference number: 1 (lower is better) Translates to: PLLKHQRPWGWALRF*FWSQDSFFNMSGLG Trigger: CCCCAGGCCAGACATGTTGAAGAAAGAATCTTGACTCCAGAACCAAAACCTTAGGGCCCATCCCCATGGCCTCTGGTGTTTCAATAAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| 3UTR TCA 90 bp | GGAGGTCAGAAATTGCCCCTCTGGGCACCAGAGATAAAAGACATCTaGGGCCACGAAGAACAAAGATGCTTTAGGACAGACATGTTGAGG | + |
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Preference number: 1 (lower is better) Translates to: GGQKLPLWAPEIKDI*GHEEQRCFRTDMLR Trigger: CCTCAACATGTCTGTCCTAAAGCATCTTTGTTCTTCGTGGCCTCAGATGTCTTTTATCTCTGGTGCCCAGAGGGGCAATTTCTGACCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| 3UTR-3UTR GCA 90 bp | GGGCTCCCACAGTACTCAGACCAGGACCAGGACATTCCTGGTAGCCCAAAGGGAGTGGAGGTCAGAAATTaGCCCTCTGGGCACCAGAGA | + |
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Preference number: 2 (lower is better) Translates to: GLPQYSDQDQDIPGSPKGVEVRN*PSGHQR Trigger: TCTCTGGTGCCCAGAGGGGCAATTTCTGACCTCCAC...TCCCTTTGGGCTACCAGGAATGTCCTGGTCCTGGTCTGAGTACTGTGGGAGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| 3UTR CAA 90 bp | CGGAGCTGGGAACACCTCTTCCATTGGACTGTCCTAGGGCTTTTCTaGTCTAGGCAGGTGGAGGTCAGAAATTGCCCCTCTGGGCACCAG | + |
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Preference number: 2 (lower is better) Translates to: RSWEHLFHWTVLGLF*SRQVEVRNCPSGHQ Trigger: CTGGTGCCCAGAGGGGCAATTTCTGACCTCCACCTGCCTAGACAAGAAAAGCCCTAGGACAGTCCAATGGAAGAGGTGTTCCCAGCTCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| 3UTR-3UTR GCA 90 bp | ACAACCTTTATTGAAACACCAGAGGCCATGGGGATGGGCCCTAAGGTTTTGGTTGGCCCCTCATGGAGCTaGTCAGGGTCCCCACAGCAC | + |
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Preference number: 2 (lower is better) Translates to: TTFIETPEAMGMGPKVLVGPSWS*SGSPQH Trigger: GTGCTGTGGGGACCCTGAGCAGCTCCATGAGGGGCC...AACCAAAACCTTAGGGCCCATCCCCATGGCCTCTGGTGTTTCAATAAAGGTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| 3UTR-3UTR CCA 90 bp | CCCAAAGGGATTCAGGAGCTTCAGAGAGAGGCCCCTCATGGAGCTGCTCAGGGTTCTTGTCTAGGCAGGTaGAGGTCAGAAATTGCCCCT | + |
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Preference number: 2 (lower is better) Translates to: PKGIQELQREAPHGAAQGSCLGR*RSEIAP Trigger: AGGGGCAATTTCTGACCTCCACCTGCCTAGACAAGA...ACCCTGAGCAGCTCCATGAGGGGCCTCTCTCTGAAGCTCCTGAATCCCTTTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| 3UTR-3UTR CCA 90 bp | CAAAGGGATTCAGGAGCTTCAGAGAGAGGCCCCTCATGGAGCTGCTCAGGGTCCCAGAAATTGCCCCTCTaGGCACCAGAGATAAAAGAC | + |
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Preference number: 2 (lower is better) Translates to: QRDSGASERGPSWSCSGSQKLPL*APEIKD Trigger: GTCTTTTATCTCTGGTGCCCAGAGGGGCAATTTCTG...GGACCCTGAGCAGCTCCATGAGGGGCCTCTCTCTGAAGCTCCTGAATCCCTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| 3UTR-3UTR CCA 90 bp | GTCAAGATTCTTTCTTCAACATGTCTGGCCTGGGGCCCTAGTGGCTGGGGAGACGAACACCTCTTCCATTaGACTGTCCTAGGGCTTTTC | + |
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Preference number: 2 (lower is better) Translates to: VKILSSTCLAWGPSGWGDEHLFH*TVLGLF Trigger: GAAAAGCCCTAGGACAGTCCAATGGAAGAGGTGTTC...GTCTCCCCAGCCACTAGGGCCCCAGGCCAGACATGTTGAAGAAAGAATCTTGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| 3UTR-3UTR CCA 90 bp | AAACACCAGAGGCCATGGGGATGGGCCCTAAGGTTTTGGTTCTGGAGTCAAGATTTTCTTCAACATGTCTaGCCTGGGGCCCTAGTGGCT | + |
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Preference number: 2 (lower is better) Translates to: KHQRPWGWALRFWFWSQDFLQHV*PGALVA Trigger: AGCCACTAGGGCCCCAGGCCAGACATGTTGAAGAAA...ATCTTGACTCCAGAACCAAAACCTTAGGGCCCATCCCCATGGCCTCTGGTGTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| 3UTR-3UTR TCA 90 bp | GTCAAGATTCTTTCTTCAACATGTCTGGCCTGGGGCCCTAGTGGCTGGGGAGACGAGATAAAAGACATCTaGGGCCACGAAGAACAAAGA | + |
|
Preference number: 2 (lower is better) Translates to: VKILSSTCLAWGPSGWGDEIKDI*GHEEQR Trigger: TCTTTGTTCTTCGTGGCCTCAGATGTCTTTTATCTC...GTCTCCCCAGCCACTAGGGCCCCAGGCCAGACATGTTGAAGAAAGAATCTTGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| 3UTR-3UTR GCA 90 bp | GTCAAGATTCTTTCTTCAACATGTCTGGCCTGGGGCCCTAGTGGCTGGGGAGACCACGAAGAACAAAGATaGTTTAGGACAGACATGTTG | + |
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Preference number: 2 (lower is better) Translates to: VKILSSTCLAWGPSGWGDHEEQR*FRTDML Trigger: CAACATGTCTGTCCTAAAGCATCTTTGTTCTTCGTG...GTCTCCCCAGCCACTAGGGCCCCAGGCCAGACATGTTGAAGAAAGAATCTTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| 3UTR TCA 72 bp | CCCTCATGGAGCTGCTCAGGGTCCCCACAGCACATGTaGGTACGGAGCTGGGAACACCTCTTCCATTGGACT | + |
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Preference number: 3 (lower is better) Translates to: PSWSCSGSPQHM*VRSWEHLFHWT Trigger: AGTCCAATGGAAGAGGTGTTCCCAGCTCCGTACTCACATGTGCTGTGGGGACCCTGAGCAGCTCCATGAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| CDS-3UTR GCA 90 bp | CCTCATGGAGCTGCTCAGGGTCCCCACAGCACATGTGAGTACGGAGCTGGGAACGGCGGCCTCGGTTTCTaGGATGGTCCGGTCAAACTC | + |
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Preference number: 4 (lower is better) Translates to: PHGAAQGPHSTCEYGAGNGGLGF*DGPVKL Trigger: GAGTTTGACCGGACCATCGCAGAAACCGAGGCCGCC...GTTCCCAGCTCCGTACTCACATGTGCTGTGGGGACCCTGAGCAGCTCCATGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| CDS-3UTR CCA 90 bp | CCTCATGGAGCTGCTCAGGGTCCCCACAGCACATGTGAGTACGGAGCTGGGAACTCGTCCTCCTCTTGCTaGATCTGCCGGCACAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: PHGAAQGPHSTCEYGAGNSSSSC*ICRHSS Trigger: GGAGCTGTGCCGGCAGATCCAGCAAGAGGAGGACGA...GTTCCCAGCTCCGTACTCACATGTGCTGTGGGGACCCTGAGCAGCTCCATGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| CDS-3UTR GCA 90 bp | AGTGAGGGGCTCCCACAGTACTCAGACCAGGACCAGGACATTCCTGGTAGCCCATTTTCGTCCTCCTCTTaGTGGATCTGCCGGCACAGC | + |
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Preference number: 4 (lower is better) Translates to: SEGLPQYSDQDQDIPGSPFSSSS*WICRHS Trigger: GCTGTGCCGGCAGATCCAGCAAGAGGAGGACGAAAA...TGGGCTACCAGGAATGTCCTGGTCCTGGTCTGAGTACTGTGGGAGCCCCTCACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| CDS-3UTR GCA 90 bp | CTGGTAGCCCAAAGGGATTCAGGAGCTTCAGAGAGAGGCCCCTCATGGAGCTGCTCATTCTGTAGCCGCTaGTTTTCGTCCTCCTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: LVAQRDSGASERGPSWSCSFCSR*FSSSSC Trigger: GCAAGAGGAGGACGAAAAGCAGCGGCTACAGAATGA...GCAGCTCCATGAGGGGCCTCTCTCTGAAGCTCCTGAATCCCTTTGGGCTACCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| CDS-3UTR TCA 90 bp | TTCAGAGAGAGGCCCCTCATGGAGCTGCTCAGGGTCCCCACAGCACATGTGAGTACTACTCTTCTGGTCTaGAGCTGTGGCTTTAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: FRERPLMELLRVPTAHVSTTLLV*SCGFSQ Trigger: CTGACTAAAGCCACAGCTTCAGACCAGAAGAGTAGT...ACTCACATGTGCTGTGGGGACCCTGAGCAGCTCCATGAGGGGCCTCTCTCTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| 3UTR CAA 72 bp | GAACACCTCTTCCATTGGACTGTCCTAGGGCTTTTCTaGTCTAGGCAGGTGGAGGTCAGAAATTGCCCCTCT | + |
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Preference number: 4 (lower is better) Translates to: EHLFHWTVLGLF*SRQVEVRNCPS Trigger: AGAGGGGCAATTTCTGACCTCCACCTGCCTAGACAAGAAAAGCCCTAGGACAGTCCAATGGAAGAGGTGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| CDS-3UTR CCA 90 bp | ATTGAAACACCAGAGGCCATGGGGATGGGCCCTAAGGTTTTGGTTCTGGAGTCACCTCCACTACTCTTCTaGTCTGAAGCTGTGGCTTTA | + |
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Preference number: 4 (lower is better) Translates to: IETPEAMGMGPKVLVLESPPLLF*SEAVAL Trigger: TAAAGCCACAGCTTCAGACCAGAAGAGTAGTGGAGG...TGACTCCAGAACCAAAACCTTAGGGCCCATCCCCATGGCCTCTGGTGTTTCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| 3UTR CAA 72 bp | GAAACACCAGAGGCCATGGGGATGGGCCCTAAGGTTTaGGTTCTGGAGTCAAGATTCTTTCTTCAACATGTC | + |
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Preference number: 4 (lower is better) Translates to: ETPEAMGMGPKV*VLESRFFLQHV Trigger: GACATGTTGAAGAAAGAATCTTGACTCCAGAACCAAAACCTTAGGGCCCATCCCCATGGCCTCTGGTGTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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| CDS-3UTR CAA 90 bp | AGCTTCAGAGAGAGGCCCCTCATGGAGCTGCTCAGGGTCCCCACAGCACATGTGTTCCCAGCTTCTCTTTaGAGTACACTAAGCAGAGTC | + |
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Preference number: 5 (lower is better) Translates to: SFRERPLMELLRVPTAHVFPASL*STLSRV Trigger: GACTCTGCTTAGTGTACTCAAAAGAGAAGCTGGGAA...CACATGTGCTGTGGGGACCCTGAGCAGCTCCATGAGGGGCCTCTCTCTGAAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028342.7 |
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