Pregenerated sensors for SSMEM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029784Ensembl transcript IDs: ENSMUST00000031797.11, ENSMUST00000031798.14, ENSMUST00000131485.2
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CAGGTCTTGTGTTCCCATGGTGGCATGAACAAATTCTCTGACCTTGTTTTAAACTTCGCCTTCTCTTTTTaGCTTCAAGGTAAGGATGCC | + |
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Preference number: 2 (lower is better) Translates to: QVLCSHGGMNKFSDLVLNFAFSF*LQGKDA Trigger: GGCATCCTTACCTTGAAGTCAAAAAGAGAAGGCGAA...GTTTAAAACAAGGTCAGAGAATTTGTTCATGCCACCATGGGAACACAAGACCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR TCA 90 bp | CAGGTCTTGTGTTCCCATGGTGGCATGAACAAATTCTCTGACCTTGTTTTAAACGCGCTTGGTGGGAAGTaGCGTGTCAGCCACTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: QVLCSHGGMNKFSDLVLNALGGK*RVSHSL Trigger: CAGGGAGTGGCTGACACGTCACTTCCCACCAAGCGC...GTTTAAAACAAGGTCAGAGAATTTGTTCATGCCACCATGGGAACACAAGACCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR TCA 90 bp | TTTATTGTGAACATCTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCGCGCTTGGTGGGAAGTaGCGTGTCAGCCACTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: FIVNISLTYNSGFHVLFAALGGK*RVSHSL Trigger: CAGGGAGTGGCTGACACGTCACTTCCCACCAAGCGC...GGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAGATGTTCACAATAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR TCA 90 bp | TCTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCTTCTCTTTTTGACACTGGGAATGGCGCCTaGCTCGTCTTTGTTCAAGGT | + |
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Preference number: 4 (lower is better) Translates to: SPSPTTLVSMFYSPSLFDTGNGA*LVFVQG Trigger: ACCTTGAACAAAGACGAGTCAGGCGCCATTCCCAGT...GTCAAAAAGAGAAGGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR TCA 90 bp | CTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCTTCTCTTTTTGACTACTGGGAATGGCGCCTaGCTCGTCTTTGTTCAAGGT | + |
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Preference number: 4 (lower is better) Translates to: LPHLQLWFPCFIRLLFLTTGNGA*LVFVQG Trigger: ACCTTGAACAAAGACGAGTCAGGCGCCATTCCCAGT...AGTCAAAAAGAGAAGGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CCA 90 bp | TTTATTGTGAACATCTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCCGGAGGAACTGGGAATaGCGCCTGACTCGTCTTTGT | + |
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Preference number: 4 (lower is better) Translates to: FIVNISLTYNSGFHVLFARRNWE*RLTRLC Trigger: ACAAAGACGAGTCAGGCGCCATTCCCAGTTCCTCCG...GGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAGATGTTCACAATAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CCA 90 bp | CAGGTCTTGTGTTCCCATGGTGGCATGAACAAATTCTCTGACCTTGTTTTAAACGTGTCAGCCACTCCCTaGTTCTCATGGCTTTGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: QVLCSHGGMNKFSDLVLNVSATP*FSWLCS Trigger: ACTGCAAAGCCATGAGAACCAGGGAGTGGCTGACAC...GTTTAAAACAAGGTCAGAGAATTTGTTCATGCCACCATGGGAACACAAGACCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CCA 90 bp | CTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCTTCTCTTTTTGACTGTGTCAGCCACTCCCTaGTTCTCATGGCTTTGCAGT | + |
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Preference number: 4 (lower is better) Translates to: LPHLQLWFPCFIRLLFLTVSATP*FSWLCS Trigger: ACTGCAAAGCCATGAGAACCAGGGAGTGGCTGACAC...AGTCAAAAAGAGAAGGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CCA 90 bp | CTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCTTCTCTTTTTGACTGAATCTCTCCCTTCATaGGGGTTGTTACTGAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: LPHLQLWFPCFIRLLFLTESLPS*GLLLRR Trigger: GCGCCTCAGTAACAACCCCCATGAAGGGAGAGATTC...AGTCAAAAAGAGAAGGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR TCA 90 bp | AAGATACAGGTCTTGTGTTCCCATGGTGGCATGAACAAATTCTCTGACCTTGTTTTTCTTCATCACCAGTaGAGAGTCCCAGGACCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: KIQVLCSHGGMNKFSDLVFLHHQ*RVPGPF Trigger: GAAGGGTCCTGGGACTCTTCACTGGTGATGAAGAAA...AACAAGGTCAGAGAATTTGTTCATGCCACCATGGGAACACAAGACCTGTATCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR GCA 90 bp | CAGGTCTTGTGTTCCCATGGTGGCATGAACAAATTCTCTGACCTTGTTTTAAACTGGTTCTCATGGCTTTaGAGTGGAGACAGGGCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: QVLCSHGGMNKFSDLVLNWFSWL*SGDRAF Trigger: AAAGGCCCTGTCTCCACTGCAAAGCCATGAGAACCA...GTTTAAAACAAGGTCAGAGAATTTGTTCATGCCACCATGGGAACACAAGACCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR GCA 90 bp | AAGATACAGGTCTTGTGTTCCCATGGTGGCATGAACAAATTCTCTGACCTTGTTTGTCTTCGTCCTGTTTaGTCTCAGACATCCAGACGG | + |
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Preference number: 4 (lower is better) Translates to: KIQVLCSHGGMNKFSDLVCLRPV*SQTSRR Trigger: CCGTCTGGATGTCTGAGAGCAAACAGGACGAAGACA...AACAAGGTCAGAGAATTTGTTCATGCCACCATGGGAACACAAGACCTGTATCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031798.14 |
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| CDS-3UTR TCA 90 bp | CTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCTTCTCTTTTTGACTGTCAAATTCTCCTCTTaGATCTCTCCCTTCATGGGG | + |
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Preference number: 4 (lower is better) Translates to: LPHLQLWFPCFIRLLFLTVKFSS*ISPFMG Trigger: CCCCATGAAGGGAGAGATTCAAGAGGAGAATTTGAC...AGTCAAAAAGAGAAGGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR TCA 90 bp | AAGATACAGGTCTTGTGTTCCCATGGTGGCATGAACAAATTCTCTGACCTTGTTGTCAAATTCTCCTCTTaGATCTCTCCCTTCATGGGG | + |
|
Preference number: 4 (lower is better) Translates to: KIQVLCSHGGMNKFSDLVVKFSS*ISPFMG Trigger: CCCCATGAAGGGAGAGATTCAAGAGGAGAATTTGAC...AACAAGGTCAGAGAATTTGTTCATGCCACCATGGGAACACAAGACCTGTATCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR GCA 90 bp | TTTATTGTGAACATCTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCTGTCTTCGTCCTGTTTaGTCTCAGACATCTCCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: FIVNISLTYNSGFHVLFACLRPV*SQTSPW Trigger: CCAGGGAGATGTCTGAGAGCAAACAGGACGAAGACA...GGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAGATGTTCACAATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031797.11 |
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| CDS-3UTR TCA 90 bp | CTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCTTCTCTTTTTGACTCTTAATATTGGCAGGTaGCAGATGATGGTCGCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: LPHLQLWFPCFIRLLFLTLNIGR*QMMVAF Trigger: GAAAGCGACCATCATCTGTCACCTGCCAATATTAAG...AGTCAAAAAGAGAAGGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR TCA 90 bp | AAGATACAGGTCTTGTGTTCCCATGGTGGCATGAACAAATTCTCTGACCTTGTTCCTTTGCCTGGACACTaGCTTCCTCCTCTTAATATT | + |
|
Preference number: 4 (lower is better) Translates to: KIQVLCSHGGMNKFSDLVPLPGH*LPPLNI Trigger: AATATTAAGAGGAGGAAGTCAGTGTCCAGGCAAAGG...AACAAGGTCAGAGAATTTGTTCATGCCACCATGGGAACACAAGACCTGTATCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CCA 90 bp | CATTGGTCTTGGGTTCCAATTATACTGTTGTTGTTAGTAAAGAGGCTTTATTGTCGGAGGAACTGGGAATaGCGCCTGACTCGTCTTTGT | + |
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Preference number: 4 (lower is better) Translates to: HWSWVPIILLLLVKRLYCRRNWE*RLTRLC Trigger: ACAAAGACGAGTCAGGCGCCATTCCCAGTTCCTCCG...ACAATAAAGCCTCTTTACTAACAACAACAGTATAATTGGAACCCAAGACCAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR TCA 90 bp | CTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCTTCTCTTTTTGACTGACAGGGCCTTTGTCTaGCTTCATAGTTTTCCATAT | + |
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Preference number: 4 (lower is better) Translates to: LPHLQLWFPCFIRLLFLTDRAFV*LHSFPY Trigger: ATATGGAAAACTATGAAGTCAGACAAAGGCCCTGTC...AGTCAAAAAGAGAAGGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR TCA 90 bp | AAGATACAGGTCTTGTGTTCCCATGGTGGCATGAACAAATTCTCTGACCTTGTTGACAGGGCCTTTGTCTaGCTTCATAGTTTTCCATAT | + |
|
Preference number: 4 (lower is better) Translates to: KIQVLCSHGGMNKFSDLVDRAFV*LHSFPY Trigger: ATATGGAAAACTATGAAGTCAGACAAAGGCCCTGTC...AACAAGGTCAGAGAATTTGTTCATGCCACCATGGGAACACAAGACCTGTATCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CCA 90 bp | AATTTGACATTGGTCTTGGGTTCCAATTATACTGTTGTTGTTAGTAAAGAGGCTGAATCTCTCCCTTCATaGGGGTTGTTACTGAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: NLTLVLGSNYTVVVSKEAESLPS*GLLLRR Trigger: GCGCCTCAGTAACAACCCCCATGAAGGGAGAGATTC...AGCCTCTTTACTAACAACAACAGTATAATTGGAACCCAAGACCAATGTCAAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR TCA 90 bp | AATTTGACATTGGTCTTGGGTTCCAATTATACTGTTGTTGTTAGTAAAGAGGCTTTTCTTCATCACCAGTaGAGAGTCCCAGGACCCTTC | + |
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Preference number: 4 (lower is better) Translates to: NLTLVLGSNYTVVVSKEAFLHHQ*RVPGPF Trigger: GAAGGGTCCTGGGACTCTTCACTGGTGATGAAGAAA...AGCCTCTTTACTAACAACAACAGTATAATTGGAACCCAAGACCAATGTCAAATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR GCA 90 bp | TTTATTGTGAACATCTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCGTGGAAACTTGGTTCTaGTTTGGTTTCTTCATCACC | + |
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Preference number: 4 (lower is better) Translates to: FIVNISLTYNSGFHVLFAVETWF*FGFFIT Trigger: GGTGATGAAGAAACCAAAGCAGAACCAAGTTTCCAC...GGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAGATGTTCACAATAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CCA 90 bp | CTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCTTCTCTTTTTGACTGTTACTGTGGAAACTTaGTTCTGCTTTGGTTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: LPHLQLWFPCFIRLLFLTVTVET*FCFGFF Trigger: GAAGAAACCAAAGCAGAACCAAGTTTCCACAGTAAC...AGTCAAAAAGAGAAGGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CCA 90 bp | TTTATTGTGAACATCTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCGTTACTGTGGAAACTTaGTTCTGCTTTGGTTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: FIVNISLTYNSGFHVLFAVTVET*FCFGFF Trigger: GAAGAAACCAAAGCAGAACCAAGTTTCCACAGTAAC...GGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAGATGTTCACAATAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR TCA 90 bp | CATTGGTCTTGGGTTCCAATTATACTGTTGTTGTTAGTAAAGAGGCTTTATTGTCCTTTGCCTGGACACTaGCTTCCTCCTCTTAATATT | + |
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Preference number: 4 (lower is better) Translates to: HWSWVPIILLLLVKRLYCPLPGH*LPPLNI Trigger: AATATTAAGAGGAGGAAGTCAGTGTCCAGGCAAAGG...ACAATAAAGCCTCTTTACTAACAACAACAGTATAATTGGAACCCAAGACCAATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CCA 90 bp | AATTTGACATTGGTCTTGGGTTCCAATTATACTGTTGTTGTTAGTAAAGAGGCTCGGAATCGGTTACTGTaGAAACTTGGTTCTGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: NLTLVLGSNYTVVVSKEARNRLL*KLGSAL Trigger: CAAAGCAGAACCAAGTTTCCACAGTAACCGATTCCG...AGCCTCTTTACTAACAACAACAGTATAATTGGAACCCAAGACCAATGTCAAATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR GCA 90 bp | CATTGGTCTTGGGTTCCAATTATACTGTTGTTGTTAGTAAAGAGGCTTTATTGTGTGGAAACTTGGTTCTaGTTTGGTTTCTTCATCACC | + |
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Preference number: 4 (lower is better) Translates to: HWSWVPIILLLLVKRLYCVETWF*FGFFIT Trigger: GGTGATGAAGAAACCAAAGCAGAACCAAGTTTCCAC...ACAATAAAGCCTCTTTACTAACAACAACAGTATAATTGGAACCCAAGACCAATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS TCA 90 bp | CTTCCTATTGTCCCGCAAGAGTCATCCTTCCGGCACTCGGCATCCTaGCTGGGCATGGTGAAACCGAGAGGTATGGGAGGGGGATCCACC | + |
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Preference number: 5 (lower is better) Translates to: LPIVPQESSFRHSAS*LGMVKPRGMGGGST Trigger: GGTGGATCCCCCTCCCATACCTCTCGGTTTCACCATGCCCAGTCAGGATGCCGAGTGCCGGAAGGATGACTCTTGCGGGACAATAGGAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031798.14 |
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| CDS TCA 90 bp | CGCAAGAGTCATCCTTCCGGCACTCGGCATCCTGACTGGGCATGGTaGAACCGAGAGGTATGGGAGGGGGATCCACCTCCCAAAATAAAG | + |
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Preference number: 5 (lower is better) Translates to: RKSHPSGTRHPDWAW*NREVWEGDPPPKIK Trigger: CTTTATTTTGGGAGGTGGATCCCCCTCCCATACCTCTCGGTTTCACCATGCCCAGTCAGGATGCCGAGTGCCGGAAGGATGACTCTTGCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031798.14 |
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| CDS TCA 90 bp | TGCCTGGACACTGACTTCCTCCTCTTAATATTGGCAGGTGACAGATaGTGGTCGCTTTCACTCTCCTTCCAGGAGGACGCTCCGGAGTTC | + |
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Preference number: 5 (lower is better) Translates to: CLDTDFLLLILAGDR*WSLSLSFQEDAPEF Trigger: GAACTCCGGAGCGTCCTCCTGGAAGGAGAGTGAAAGCGACCATCATCTGTCACCTGCCAATATTAAGAGGAGGAAGTCAGTGTCCAGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS CCA 90 bp | TGTTGGTCCCAGGTGTCAAATTCTCCTCTTGAATCTCTCCCTTCATaGGGGTTGTTACTGAGGCGCTTGGTGGGAAGTGACGTGTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: CWSQVSNSPLESLPS*GLLLRRLVGSDVSA Trigger: GGCTGACACGTCACTTCCCACCAAGCGCCTCAGTAACAACCCCCATGAAGGGAGAGATTCAAGAGGAGAATTTGACACCTGGGACCAACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS TCA 90 bp | GATTCCTCGCTGTCACATTCAGTGGTGTCACTATCTTGCTGGATCTaGTTCACCCGGAGGAACTGGGAATGGCGCCTGACTCGTCTTTGT | + |
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Preference number: 5 (lower is better) Translates to: DSSLSHSVVSLSCWI*FTRRNWEWRLTRLC Trigger: ACAAAGACGAGTCAGGCGCCATTCCCAGTTCCTCCGGGTGAATCAGATCCAGCAAGATAGTGACACCACTGAATGTGACAGCGAGGAATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS TCA 90 bp | TGTCAAATTCTCCTCTTGAATCTCTCCCTTCATGGGGGTTGTTACTaGGGCGCTTGGTGGGAAGTGACGTGTCAGCCACTCCCTGGTTCT | + |
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Preference number: 5 (lower is better) Translates to: CQILLLNLSLHGGCY*GAWWEVTCQPLPGS Trigger: AGAACCAGGGAGTGGCTGACACGTCACTTCCCACCAAGCGCCTCAGTAACAACCCCCATGAAGGGAGAGATTCAAGAGGAGAATTTGACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS GCA 90 bp | CTGACCAAAGCCACCTCGGAATCGGTTACTGTGGAAACTTGGTTCTaGTTTGGTTTCTTCATCACCAGTGAAGAGTCCCAGGACCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: LTKATSESVTVETWF*FGFFITSEESQDPS Trigger: AGAAGGGTCCTGGGACTCTTCACTGGTGATGAAGAAACCAAAGCAGAACCAAGTTTCCACAGTAACCGATTCCGAGGTGGCTTTGGTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 ENSMUST00000131485.2 |
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| CDS-3UTR CAA 90 bp | CTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCTTCTCTTTTTGACTCTCCCTTCATGGGGGTaGTTACTGAGGCGCTTGGTG | + |
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Preference number: 5 (lower is better) Translates to: LPHLQLWFPCFIRLLFLTLPSWG*LLRRLV Trigger: CACCAAGCGCCTCAGTAACAACCCCCATGAAGGGAG...AGTCAAAAAGAGAAGGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CAA 90 bp | CAGGTCTTGTGTTCCCATGGTGGCATGAACAAATTCTCTGACCTTGTTTTAAACCTCCCTTCATGGGGGTaGTTACTGAGGCGCTTGGTG | + |
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Preference number: 5 (lower is better) Translates to: QVLCSHGGMNKFSDLVLNLPSWG*LLRRLV Trigger: CACCAAGCGCCTCAGTAACAACCCCCATGAAGGGAG...GTTTAAAACAAGGTCAGAGAATTTGTTCATGCCACCATGGGAACACAAGACCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS TCA 90 bp | CTTCTCTATTTTGTCGCTTACAGGAAGTTTCTTTGCTTGCTTTACTaGGTGACGCACTGGTCCCGCTGTCTTCGTCCTGTTTGCTCTCAG | + |
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Preference number: 5 (lower is better) Translates to: LLYFVAYRKFLCLLY*VTHWSRCLRPVCSQ Trigger: CTGAGAGCAAACAGGACGAAGACAGCGGGACCAGTGCGTCACTCAGTAAAGCAAGCAAAGAAACTTCCTGTAAGCGACAAAATAGAGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 ENSMUST00000131485.2 |
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| CDS TCA 90 bp | AATTTGCTGAATTTTGTGTTGGTCCCAGGTGTCAAATTCTCCTCTTaGATCTCTCCCTTCATGGGGGTTGTTACTGAGGCGCTTGGTGGG | + |
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Preference number: 5 (lower is better) Translates to: NLLNFVLVPGVKFSS*ISPFMGVVTEALGG Trigger: CCCACCAAGCGCCTCAGTAACAACCCCCATGAAGGGAGAGATTCAAGAGGAGAATTTGACACCTGGGACCAACACAAAATTCAGCAAATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CAA 90 bp | AAGATACAGGTCTTGTGTTCCCATGGTGGCATGAACAAATTCTCTGACCTTGTTCTGGTTCTCATGGCTTaGCAGTGGAGACAGGGCCTT | + |
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Preference number: 5 (lower is better) Translates to: KIQVLCSHGGMNKFSDLVLVLMA*QWRQGL Trigger: AAGGCCCTGTCTCCACTGCAAAGCCATGAGAACCAG...AACAAGGTCAGAGAATTTGTTCATGCCACCATGGGAACACAAGACCTGTATCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CAA 90 bp | CAGGTCTTGTGTTCCCATGGTGGCATGAACAAATTCTCTGACCTTGTTTTAAACCTGGTTCTCATGGCTTaGCAGTGGAGACAGGGCCTT | + |
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Preference number: 5 (lower is better) Translates to: QVLCSHGGMNKFSDLVLNLVLMA*QWRQGL Trigger: AAGGCCCTGTCTCCACTGCAAAGCCATGAGAACCAG...GTTTAAAACAAGGTCAGAGAATTTGTTCATGCCACCATGGGAACACAAGACCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS TCA 90 bp | TCTATTTTGTCGCTTACAGGAAGTTTCTTTGCTTGCTTTACTGAGTaGCGCACTGGTCCCGCTGTCTTCGTCCTGTTTGCTCTCAGACAT | + |
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Preference number: 5 (lower is better) Translates to: SILSLTGSFFACFTE*RTGPAVFVLFALRH Trigger: ATGTCTGAGAGCAAACAGGACGAAGACAGCGGGACCAGTGCGTCACTCAGTAAAGCAAGCAAAGAAACTTCCTGTAAGCGACAAAATAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 ENSMUST00000131485.2 |
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| CDS-3UTR CAA 90 bp | TCTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCTTCTCTTTTTGACTTGTTACTGAGGCGCTaGGTGGGAAGTGACGTGTCA | + |
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Preference number: 5 (lower is better) Translates to: SPSPTTLVSMFYSPSLFDLLLRR*VGSDVS Trigger: TGACACGTCACTTCCCACCAAGCGCCTCAGTAACAA...GTCAAAAAGAGAAGGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CAA 90 bp | TCTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCTTCTCTTTTTGACGCAGGAAACTTCCTATaGTCCCGCAAGAGTCATCCT | + |
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Preference number: 5 (lower is better) Translates to: SPSPTTLVSMFYSPSLFDAGNFL*SRKSHP Trigger: AGGATGACTCTTGCGGGACAATAGGAAGTTTCCTGC...GTCAAAAAGAGAAGGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031798.14 |
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| CDS-3UTR CAA 90 bp | TCTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCTTCTCTTTTTGACTGTCAAATTCTCCTCTaGAATCTCTCCCTTCATGGG | + |
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Preference number: 5 (lower is better) Translates to: SPSPTTLVSMFYSPSLFDCQILL*NLSLHG Trigger: CCCATGAAGGGAGAGATTCAAGAGGAGAATTTGACA...GTCAAAAAGAGAAGGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CAA 90 bp | CATTGGTCTTGGGTTCCAATTATACTGTTGTTGTTAGTAAAGAGGCTTTATTGTCTGTCTTCGTCCTGTTaGCTCTCAGACATCTCCCTG | + |
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Preference number: 5 (lower is better) Translates to: HWSWVPIILLLLVKRLYCLSSSC*LSDISL Trigger: CAGGGAGATGTCTGAGAGCAAACAGGACGAAGACAG...ACAATAAAGCCTCTTTACTAACAACAACAGTATAATTGGAACCCAAGACCAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031797.11 |
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| CDS-3UTR CAA 90 bp | CTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCTTCTCTTTTTGACTAAACTTGGTTCTGCTTaGGTTTCTTCATCACCAGTG | + |
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Preference number: 5 (lower is better) Translates to: LPHLQLWFPCFIRLLFLTKLGSA*VSSSPV Trigger: CACTGGTGATGAAGAAACCAAAGCAGAACCAAGTTT...AGTCAAAAAGAGAAGGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CAA 90 bp | CATTGGTCTTGGGTTCCAATTATACTGTTGTTGTTAGTAAAGAGGCTTTATTGTTTGTTACTGAGGCGCTaGGTGGGAAGTGACGTGTCA | + |
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Preference number: 5 (lower is better) Translates to: HWSWVPIILLLLVKRLYCLLLRR*VGSDVS Trigger: TGACACGTCACTTCCCACCAAGCGCCTCAGTAACAA...ACAATAAAGCCTCTTTACTAACAACAACAGTATAATTGGAACCCAAGACCAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CAA 90 bp | AATTTGACATTGGTCTTGGGTTCCAATTATACTGTTGTTGTTAGTAAAGAGGCTCTGTCTTCGTCCTGTTaGCTCTCAGACATCCAGACG | + |
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Preference number: 5 (lower is better) Translates to: NLTLVLGSNYTVVVSKEALSSSC*LSDIQT Trigger: CGTCTGGATGTCTGAGAGCAAACAGGACGAAGACAG...AGCCTCTTTACTAACAACAACAGTATAATTGGAACCCAAGACCAATGTCAAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031798.14 |
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| CDS-3UTR CAA 90 bp | CTCCCTCACCTACAACTCTGGTTTCCATGTTTTATTCGCCTTCTCTTTTTGACTTTACAGGAAGTTTCTTaGCTTGCTTTACTGAGTGAC | + |
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Preference number: 5 (lower is better) Translates to: LPHLQLWFPCFIRLLFLTLQEVS*LALLSD Trigger: GTCACTCAGTAAAGCAAGCAAAGAAACTTCCTGTAA...AGTCAAAAAGAGAAGGCGAATAAAACATGGAAACCAGAGTTGTAGGTGAGGGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CAA 90 bp | AATTTGACATTGGTCTTGGGTTCCAATTATACTGTTGTTGTTAGTAAAGAGGCTGTGGAGACAGGGCCTTaGTCTGACTTCATAGTTTTC | + |
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Preference number: 5 (lower is better) Translates to: NLTLVLGSNYTVVVSKEAVETGP*SDFIVF Trigger: GAAAACTATGAAGTCAGACAAAGGCCCTGTCTCCAC...AGCCTCTTTACTAACAACAACAGTATAATTGGAACCCAAGACCAATGTCAAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CAA 90 bp | AATTTGACATTGGTCTTGGGTTCCAATTATACTGTTGTTGTTAGTAAAGAGGCTTGTCAAATTCTCCTCTaGAATCTCTCCCTTCATGGG | + |
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Preference number: 5 (lower is better) Translates to: NLTLVLGSNYTVVVSKEACQILL*NLSLHG Trigger: CCCATGAAGGGAGAGATTCAAGAGGAGAATTTGACA...AGCCTCTTTACTAACAACAACAGTATAATTGGAACCCAAGACCAATGTCAAATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS-3UTR CAA 90 bp | AATTTGACATTGGTCTTGGGTTCCAATTATACTGTTGTTGTTAGTAAAGAGGCTTTACAGGAAGTTTCTTaGCTTGCTTTACTGAGTGAC | + |
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Preference number: 5 (lower is better) Translates to: NLTLVLGSNYTVVVSKEALQEVS*LALLSD Trigger: GTCACTCAGTAAAGCAAGCAAAGAAACTTCCTGTAA...AGCCTCTTTACTAACAACAACAGTATAATTGGAACCCAAGACCAATGTCAAATT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS CAA 72 bp | CACCCGGAGGAACTGGGAATGGCGCCTGACTCGTCTTaGTTCAAGGTAGGCGCTGACCAAAGCCACCTCGGA | + |
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Preference number: 6 (lower is better) Translates to: HPEELGMAPDSS*FKVGADQSHLG Trigger: TCCGAGGTGGCTTTGGTCAGCGCCTACCTTGAACAAAGACGAGTCAGGCGCCATTCCCAGTTCCTCCGGGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS CAA 72 bp | GAATCTCTCCCTTCATGGGGGTTGTTACTGAGGCGCTaGGTGGGAAGTGACGTGTCAGCCACTCCCTGGTTC | + |
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Preference number: 6 (lower is better) Translates to: ESLPSWGLLLRR*VGSDVSATPWF Trigger: GAACCAGGGAGTGGCTGACACGTCACTTCCCACCAAGCGCCTCAGTAACAACCCCCATGAAGGGAGAGATTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS CAA 90 bp | GATCTGATTCACCCGGAGGAACTGGGAATGGCGCCTGACTCGTCTTaGTTCAAGGTAGGCGCTGACCAAAGCCACCTCGGAATCGGTTAC | + |
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Preference number: 6 (lower is better) Translates to: DLIHPEELGMAPDSS*FKVGADQSHLGIGY Trigger: GTAACCGATTCCGAGGTGGCTTTGGTCAGCGCCTACCTTGAACAAAGACGAGTCAGGCGCCATTCCCAGTTCCTCCGGGTGAATCAGATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS TCA 72 bp | CTCCTCTTGAATCTCTCCCTTCATGGGGGTTGTTACTaGGGCGCTTGGTGGGAAGTGACGTGTCAGCCACTC | + |
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Preference number: 6 (lower is better) Translates to: LLLNLSLHGGCY*GAWWEVTCQPL Trigger: GAGTGGCTGACACGTCACTTCCCACCAAGCGCCTCAGTAACAACCCCCATGAAGGGAGAGATTCAAGAGGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS CAA 90 bp | TCTCCTCTTGAATCTCTCCCTTCATGGGGGTTGTTACTGAGGCGCTaGGTGGGAAGTGACGTGTCAGCCACTCCCTGGTTCTCATGGCTT | + |
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Preference number: 6 (lower is better) Translates to: SPLESLPSWGLLLRR*VGSDVSATPWFSWL Trigger: AAGCCATGAGAACCAGGGAGTGGCTGACACGTCACTTCCCACCAAGCGCCTCAGTAACAACCCCCATGAAGGGAGAGATTCAAGAGGAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS CAA 90 bp | CTTGCTTTACTGAGTGACGCACTGGTCCCGCTGTCTTCGTCCTGTTaGCTCTCAGACATCCAGACGGAAGCGCGAGAGAAGAACATGAGG | + |
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Preference number: 6 (lower is better) Translates to: LALLSDALVPLSSSC*LSDIQTEAREKNMR Trigger: CCTCATGTTCTTCTCTCGCGCTTCCGTCTGGATGTCTGAGAGCAAACAGGACGAAGACAGCGGGACCAGTGCGTCACTCAGTAAAGCAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031798.14 |
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| CDS CAA 90 bp | GAGTCCCAGGACCCTTCTCTATTTTGTCGCTTACAGGAAGTTTCTTaGCTTGCTTTACTGAGTGACGCACTGGTCCCGCTGTCTTCGTCC | + |
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Preference number: 6 (lower is better) Translates to: ESQDPSLFCRLQEVS*LALLSDALVPLSSS Trigger: GGACGAAGACAGCGGGACCAGTGCGTCACTCAGTAAAGCAAGCAAAGAAACTTCCTGTAAGCGACAAAATAGAGAAGGGTCCTGGGACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 ENSMUST00000131485.2 |
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| CDS CCA 72 bp | CAGGTGTCAAATTCTCCTCTTGAATCTCTCCCTTCATaGGGGTTGTTACTGAGGCGCTTGGTGGGAAGTGAC | + |
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Preference number: 6 (lower is better) Translates to: QVSNSPLESLPS*GLLLRRLVGSD Trigger: GTCACTTCCCACCAAGCGCCTCAGTAACAACCCCCATGAAGGGAGAGATTCAAGAGGAGAATTTGACACCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS CAA 90 bp | CTTGCTTTACTGAGTGACGCACTGGTCCCGCTGTCTTCGTCCTGTTaGCTCTCAGACATCTCCCTGGTGACTCTTTTCTCAGTTCTTTCA | + |
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Preference number: 6 (lower is better) Translates to: LALLSDALVPLSSSC*LSDISLVTLFSVLS Trigger: TGAAAGAACTGAGAAAAGAGTCACCAGGGAGATGTCTGAGAGCAAACAGGACGAAGACAGCGGGACCAGTGCGTCACTCAGTAAAGCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031797.11 |
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| CDS TCA 72 bp | ACTGACTTCCTCCTCTTAATATTGGCAGGTGACAGATaGTGGTCGCTTTCACTCTCCTTCCAGGAGGACGCT | + |
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Preference number: 6 (lower is better) Translates to: TDFLLLILAGDR*WSLSLSFQEDA Trigger: AGCGTCCTCCTGGAAGGAGAGTGAAAGCGACCATCATCTGTCACCTGCCAATATTAAGAGGAGGAAGTCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS GCA 72 bp | GCCACCTCGGAATCGGTTACTGTGGAAACTTGGTTCTaGTTTGGTTTCTTCATCACCAGTGAAGAGTCCCAG | + |
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Preference number: 6 (lower is better) Translates to: ATSESVTVETWF*FGFFITSEESQ Trigger: CTGGGACTCTTCACTGGTGATGAAGAAACCAAAGCAGAACCAAGTTTCCACAGTAACCGATTCCGAGGTGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 ENSMUST00000131485.2 |
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| CDS CAA 72 bp | CCTCGGAATCGGTTACTGTGGAAACTTGGTTCTGCTTaGGTTTCTTCATCACCAGTGAAGAGTCCCAGGACC | + |
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Preference number: 6 (lower is better) Translates to: PRNRLLWKLGSA*VSSSPVKSPRT Trigger: GGTCCTGGGACTCTTCACTGGTGATGAAGAAACCAAAGCAGAACCAAGTTTCCACAGTAACCGATTCCGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 ENSMUST00000131485.2 |
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| CDS CAA 72 bp | TCAAATTCTCCTCTTGAATCTCTCCCTTCATGGGGGTaGTTACTGAGGCGCTTGGTGGGAAGTGACGTGTCA | + |
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Preference number: 6 (lower is better) Translates to: SNSPLESLPSWG*LLRRLVGSDVS Trigger: TGACACGTCACTTCCCACCAAGCGCCTCAGTAACAACCCCCATGAAGGGAGAGATTCAAGAGGAGAATTTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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| CDS CAA 90 bp | CCAAAGCCACCTCGGAATCGGTTACTGTGGAAACTTGGTTCTGCTTaGGTTTCTTCATCACCAGTGAAGAGTCCCAGGACCCTTCTCTAT | + |
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Preference number: 6 (lower is better) Translates to: PKPPRNRLLWKLGSA*VSSSPVKSPRTLLY Trigger: ATAGAGAAGGGTCCTGGGACTCTTCACTGGTGATGAAGAAACCAAAGCAGAACCAAGTTTCCACAGTAACCGATTCCGAGGTGGCTTTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 ENSMUST00000131485.2 |
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| CDS TCA 72 bp | TTTGTCGCTTACAGGAAGTTTCTTTGCTTGCTTTACTaGGTGACGCACTGGTCCCGCTGTCTTCGTCCTGTT | + |
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Preference number: 6 (lower is better) Translates to: FVAYRKFLCLLY*VTHWSRCLRPV Trigger: AACAGGACGAAGACAGCGGGACCAGTGCGTCACTCAGTAAAGCAAGCAAAGAAACTTCCTGTAAGCGACAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 ENSMUST00000131485.2 |
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| CDS TCA 72 bp | AATTTTGTGTTGGTCCCAGGTGTCAAATTCTCCTCTTaGATCTCTCCCTTCATGGGGGTTGTTACTGAGGCG | + |
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Preference number: 6 (lower is better) Translates to: NFVLVPGVKFSS*ISPFMGVVTEA Trigger: CGCCTCAGTAACAACCCCCATGAAGGGAGAGATTCAAGAGGAGAATTTGACACCTGGGACCAACACAAAATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031797.11 ENSMUST00000031798.14 |
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