Pregenerated sensors for SSBP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061887Ensembl transcript IDs: ENSMUST00000030367.15
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TATGGCCCAGATTGTAGTCATCCCGTTGGCGGGGCCTCTCCTCCTTaGCCTGGGCCACTACCCAGCCAGCAGGACTCTTGCCAGGAAACG | + |
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Preference number: 1 (lower is better) Translates to: YGPDCSHPVGGASPP*PGPLPSQQDSCQET Trigger: CGTTTCCTGGCAAGAGTCCTGCTGGCTGGGTAGTGGCCCAGGCCAAGGAGGAGAGGCCCCGCCAACGGGATGACTACAATCTGGGCCATA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR CCA 90 bp | TGCCAGGAAACGGTGGGGATCGAAAGACTGGAGGCCCCAGTGGCTTaGCACGAGAGGTCTGGAGAAGAGGCAGCCATCCTGGAACAGTGT | + |
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Preference number: 1 (lower is better) Translates to: CQETVGIERLEAPVA*HERSGEEAAILEQC Trigger: ACACTGTTCCAGGATGGCTGCCTCTTCTCCAGACCTCTCGTGCCAAGCCACTGGGGCCTCCAGTCTTTCGATCCCCACCGTTTCCTGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR CCA 90 bp | ACTCTTGCCAGGAAACGGTGGGGATCGAAAGACTGGAGGCCCCAGTaGCTTGGCACGAGAGGTCTGGAGAAGAGGCAGCCATCCTGGAAC | + |
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Preference number: 1 (lower is better) Translates to: TLARKRWGSKDWRPQ*LGTRGLEKRQPSWN Trigger: GTTCCAGGATGGCTGCCTCTTCTCCAGACCTCTCGTGCCAAGCCACTGGGGCCTCCAGTCTTTCGATCCCCACCGTTTCCTGGCAAGAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR CCA 90 bp | AAGAGGCAGCCATCCTGGAACAGTGTGTACGCTGGATCACAGCGATaGTCTCTGTTGGGTGACAGCAGGCTCTGGGTCCTCTGGCCCAGT | + |
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Preference number: 1 (lower is better) Translates to: KRQPSWNSVYAGSQR*SLLGDSRLWVLWPS Trigger: ACTGGGCCAGAGGACCCAGAGCCTGCTGTCACCCAACAGAGACCATCGCTGTGATCCAGCGTACACACTGTTCCAGGATGGCTGCCTCTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR CCA 90 bp | CCCCAGTGGCTTGGCACGAGAGGTCTGGAGAAGAGGCAGCCATCCTaGAACAGTGTGTACGCTGGATCACAGCGATGGTCTCTGTTGGGT | + |
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Preference number: 1 (lower is better) Translates to: PQWLGTRGLEKRQPS*NSVYAGSQRWSLLG Trigger: ACCCAACAGAGACCATCGCTGTGATCCAGCGTACACACTGTTCCAGGATGGCTGCCTCTTCTCCAGACCTCTCGTGCCAAGCCACTGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR TCA 90 bp | ACCAGCTACAAGGGTGGGCAGGGCGCAGAGGGTGTACATGTACAATaGACTCAGTGTCTTCCGGGGCAAGACACAAAGGTTGCCACGGGG | + |
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Preference number: 1 (lower is better) Translates to: TSYKGGQGAEGVHVQ*TQCLPGQDTKVATG Trigger: CCCCGTGGCAACCTTTGTGTCTTGCCCCGGAAGACACTGAGTTCATTGTACATGTACACCCTCTGCGCCCTGCCCACCCTTGTAGCTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR TCA 90 bp | AAAAGAAAACCACAACCTCAGCCTGCCCTGCCAGTGCGCACTATGTaGGGAGCTCGGGACCAGAATATGGAGGTCAGGGCTATGGCCCAG | + |
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Preference number: 1 (lower is better) Translates to: KRKPQPQPALPVRTM*GARDQNMEVRAMAQ Trigger: CTGGGCCATAGCCCTGACCTCCATATTCTGGTCCCGAGCTCCTCACATAGTGCGCACTGGCAGGGCAGGCTGAGGTTGTGGTTTTCTTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR CCA 90 bp | CATCCTGGAACAGTGTGTACGCTGGATCACAGCGATGGTCTCTGTTaGGTGACAGCAGGCTCTGGGTCCTCTGGCCCAGTGTGTTGTGAT | + |
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Preference number: 1 (lower is better) Translates to: HPGTVCTLDHSDGLC*VTAGSGSSGPVCCD Trigger: ATCACAACACACTGGGCCAGAGGACCCAGAGCCTGCTGTCACCCAACAGAGACCATCGCTGTGATCCAGCGTACACACTGTTCCAGGATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR-3UTR CCA 90 bp | ATGGCCCAGATTGTAGTCATCCCGTTGGCGGGGCCTCTCCTCCTTGGCCTGGGCAGCGATGGTCTCTGTTaGGTGACAGCAGGCTCTGGG | + |
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Preference number: 2 (lower is better) Translates to: MAQIVVIPLAGPLLLGLGSDGLC*VTAGSG Trigger: CCCAGAGCCTGCTGTCACCCAACAGAGACCATCGCT...GCCCAGGCCAAGGAGGAGAGGCCCCGCCAACGGGATGACTACAATCTGGGCCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR-3UTR CCA 90 bp | GGCCCAGATTGTAGTCATCCCGTTGGCGGGGCCTCTCCTCCTTGGCCTGGGCCATTGGCACGAGAGGTCTaGAGAAGAGGCAGCCATCCT | + |
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Preference number: 2 (lower is better) Translates to: GPDCSHPVGGASPPWPGPLAREV*RRGSHP Trigger: AGGATGGCTGCCTCTTCTCCAGACCTCTCGTGCCAA...TGGCCCAGGCCAAGGAGGAGAGGCCCCGCCAACGGGATGACTACAATCTGGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR-3UTR TCA 90 bp | AGACTGGAGGCCCCAGTGGCTTGGCACGAGAGGTCTGGAGAAGAGGCAGCCATCAAGCCAGAGCAAAGCTaGCACCTGCATCTCCTCGCC | + |
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Preference number: 2 (lower is better) Translates to: RLEAPVAWHERSGEEAAIKPEQS*HLHLLA Trigger: GGCGAGGAGATGCAGGTGTCAGCTTTGCTCTGGCTT...GATGGCTGCCTCTTCTCCAGACCTCTCGTGCCAAGCCACTGGGGCCTCCAGTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR CAA 90 bp | TTGCCAGGAAACGGTGGGGATCGAAAGACTGGAGGCCCCAGTGGCTaGGCACGAGAGGTCTGGAGAAGAGGCAGCCATCCTGGAACAGTG | + |
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Preference number: 2 (lower is better) Translates to: LPGNGGDRKTGGPSG*AREVWRRGSHPGTV Trigger: CACTGTTCCAGGATGGCTGCCTCTTCTCCAGACCTCTCGTGCCAAGCCACTGGGGCCTCCAGTCTTTCGATCCCCACCGTTTCCTGGCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR-3UTR CCA 90 bp | ATGGCCCAGATTGTAGTCATCCCGTTGGCGGGGCCTCTCCTCCTTGGCCTGGGCACCCCAAGGCCCATGTaGAAAGGGTTGGTTTCTGTT | + |
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Preference number: 2 (lower is better) Translates to: MAQIVVIPLAGPLLLGLGTPRPM*KGLVSV Trigger: AACAGAAACCAACCCTTTCCACATGGGCCTTGGGGT...GCCCAGGCCAAGGAGGAGAGGCCCCGCCAACGGGATGACTACAATCTGGGCCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR-3UTR TCA 90 bp | ACGAGAGGTCTGGAGAAGAGGCAGCCATCCTGGAACAGTGTGTACGCTGGATCAATGGTCTCTGTTGGGTaGCAGCAGGCTCTGGGTCCT | + |
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Preference number: 2 (lower is better) Translates to: TRGLEKRQPSWNSVYAGSMVSVG*QQALGP Trigger: AGGACCCAGAGCCTGCTGTCACCCAACAGAGACCAT...TGATCCAGCGTACACACTGTTCCAGGATGGCTGCCTCTTCTCCAGACCTCTCGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR-3UTR GCA 90 bp | CTGCCCTGCCAGTGCGCACTATGTGAGGAGCTCGGGACCAGAATATGGAGGTCAATTCTTGGCATCTTCTaGCTGCAATGCTGGCTCCCA | + |
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Preference number: 2 (lower is better) Translates to: LPCQCALCEELGTRIWRSILGIF*LQCWLP Trigger: TGGGAGCCAGCATTGCAGGCAGAAGATGCCAAGAAT...TGACCTCCATATTCTGGTCCCGAGCTCCTCACATAGTGCGCACTGGCAGGGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR CAA 90 bp | AGTCAAGCCAGAGCAAAGCTGACACCTGCATCTCCTCGCCCAGCTTaGCAAACCCCAAGGCCCATGTGGAAAGGGTTGGTTTCTGTTCCT | + |
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Preference number: 2 (lower is better) Translates to: SQARAKLTPASPRPA*QTPRPMWKGLVSVP Trigger: AGGAACAGAAACCAACCCTTTCCACATGGGCCTTGGGGTTTGCAAAGCTGGGCGAGGAGATGCAGGTGTCAGCTTTGCTCTGGCTTGACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR-3UTR TCA 90 bp | TCTTCCGGGGCAAGACACAAAGGTTGCCACGGGGAGAGGCCAGGGCAGCCAAGTTCCCCAAACAGCTTTTaGAATAAACCAGCAATTGCA | + |
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Preference number: 2 (lower is better) Translates to: SSGARHKGCHGERPGQPSSPNSF*NKPAIA Trigger: TGCAATTGCTGGTTTATTTCAAAAGCTGTTTGGGGA...ACTTGGCTGCCCTGGCCTCTCCCCGTGGCAACCTTTGTGTCTTGCCCCGGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR-3UTR CCA 90 bp | AATACAGAGCAATTCCAACCAACACCCATCTCTGAAAAAGGACAAACAGGAGGAGGTGACAGCAGGCTCTaGGTCCTCTGGCCCAGTGTG | + |
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Preference number: 2 (lower is better) Translates to: NTEQFQPTPISEKGQTGGGDSRL*VLWPSV Trigger: CACACTGGGCCAGAGGACCCAGAGCCTGCTGTCACC...TCCTCCTGTTTGTCCTTTTTCAGAGATGGGTGTTGGTTGGAATTGCTCTGTATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR-3UTR GCA 90 bp | AATACAGAGCAATTCCAACCAACACCCATCTCTGAAAAAGGACAAACAGGAGGAATCTTCTGCCTGCAATaGTGGCTCCCAGCGTCTCGG | + |
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Preference number: 2 (lower is better) Translates to: NTEQFQPTPISEKGQTGGIFCLQ*WLPASR Trigger: CCGAGACGCTGGGAGCCAGCATTGCAGGCAGAAGAT...TCCTCCTGTTTGTCCTTTTTCAGAGATGGGTGTTGGTTGGAATTGCTCTGTATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR-3UTR CCA 90 bp | GCAATGCCGAAGTCTGTCCATCCAGTCCCAAGCAAATACAGAGCAATTCCAACCCCATGTGGAAAGGGTTaGTTTCTGTTCCTTTTCCCC | + |
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Preference number: 2 (lower is better) Translates to: AMPKSVHPVPSKYRAIPTPCGKG*FLFLFP Trigger: GGGGAAAAGGAACAGAAACCAACCCTTTCCACATGG...GGTTGGAATTGCTCTGTATTTGCTTGGGACTGGATGGACAGACTTCGGCATTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR GCA 72 bp | CCTTGGCCTGGGCCACTACCCAGCCAGCAGGACTCTTaGCAGGAAACGGTGGGGATCGAAAGACTGGAGGCC | + |
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Preference number: 3 (lower is better) Translates to: PWPGPLPSQQDS*QETVGIERLEA Trigger: GGCCTCCAGTCTTTCGATCCCCACCGTTTCCTGGCAAGAGTCCTGCTGGCTGGGTAGTGGCCCAGGCCAAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR CCA 72 bp | GATTGTAGTCATCCCGTTGGCGGGGCCTCTCCTCCTTaGCCTGGGCCACTACCCAGCCAGCAGGACTCTTGC | + |
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Preference number: 3 (lower is better) Translates to: DCSHPVGGASPP*PGPLPSQQDSC Trigger: GCAAGAGTCCTGCTGGCTGGGTAGTGGCCCAGGCCAAGGAGGAGAGGCCCCGCCAACGGGATGACTACAATC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR-3UTR CAA 90 bp | CGAAAGACTGGAGGCCCCAGTGGCTTGGCACGAGAGGTCTGGAGAAGAGGCAGCTCTCCTCGCCCAGCTTaGCAAACCCCAAGGCCCATG | + |
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Preference number: 3 (lower is better) Translates to: RKTGGPSGLAREVWRRGSSPRPA*QTPRPM Trigger: CATGGGCCTTGGGGTTTGCAAAGCTGGGCGAGGAGA...GCTGCCTCTTCTCCAGACCTCTCGTGCCAAGCCACTGGGGCCTCCAGTCTTTCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR CCA 72 bp | ACGGTGGGGATCGAAAGACTGGAGGCCCCAGTGGCTTaGCACGAGAGGTCTGGAGAAGAGGCAGCCATCCTG | + |
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Preference number: 3 (lower is better) Translates to: TVGIERLEAPVA*HERSGEEAAIL Trigger: CAGGATGGCTGCCTCTTCTCCAGACCTCTCGTGCCAAGCCACTGGGGCCTCCAGTCTTTCGATCCCCACCGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR CCA 72 bp | CACTACCCAGCCAGCAGGACTCTTGCCAGGAAACGGTaGGGATCGAAAGACTGGAGGCCCCAGTGGCTTGGC | + |
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Preference number: 3 (lower is better) Translates to: HYPASRTLARKR*GSKDWRPQWLG Trigger: GCCAAGCCACTGGGGCCTCCAGTCTTTCGATCCCCACCGTTTCCTGGCAAGAGTCCTGCTGGCTGGGTAGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR GCA 72 bp | ATGAACTCAGTGTCTTCCGGGGCAAGACACAAAGGTTaGCACGGGGAGAGGCCAGGGCAGCCAAGTCACCCC | + |
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Preference number: 3 (lower is better) Translates to: MNSVSSGARHKG*HGERPGQPSHP Trigger: GGGGTGACTTGGCTGCCCTGGCCTCTCCCCGTGGCAACCTTTGTGTCTTGCCCCGGAAGACACTGAGTTCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR CCA 72 bp | AGGAAACGGTGGGGATCGAAAGACTGGAGGCCCCAGTaGCTTGGCACGAGAGGTCTGGAGAAGAGGCAGCCA | + |
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Preference number: 3 (lower is better) Translates to: RKRWGSKDWRPQ*LGTRGLEKRQP Trigger: TGGCTGCCTCTTCTCCAGACCTCTCGTGCCAAGCCACTGGGGCCTCCAGTCTTTCGATCCCCACCGTTTCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR CCA 72 bp | ACAGTGTGTACGCTGGATCACAGCGATGGTCTCTGTTaGGTGACAGCAGGCTCTGGGTCCTCTGGCCCAGTG | + |
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Preference number: 3 (lower is better) Translates to: TVCTLDHSDGLC*VTAGSGSSGPV Trigger: CACTGGGCCAGAGGACCCAGAGCCTGCTGTCACCCAACAGAGACCATCGCTGTGATCCAGCGTACACACTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR CCA 72 bp | AAGACTGGAGGCCCCAGTGGCTTGGCACGAGAGGTCTaGAGAAGAGGCAGCCATCCTGGAACAGTGTGTACG | + |
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Preference number: 3 (lower is better) Translates to: KTGGPSGLAREV*RRGSHPGTVCT Trigger: CGTACACACTGTTCCAGGATGGCTGCCTCTTCTCCAGACCTCTCGTGCCAAGCCACTGGGGCCTCCAGTCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR-3UTR CAA 90 bp | GTGTCTTCCGGGGCAAGACACAAAGGTTGCCACGGGGAGAGGCCAGGGCAGCCATACAGAAAGGTCCTTTaGGGCGGGAAGAAGGTGAGA | + |
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Preference number: 3 (lower is better) Translates to: VSSGARHKGCHGERPGQPYRKVL*GGKKVR Trigger: TCTCACCTTCTTCCCGCCCAAAAGGACCTTTCTGTA...TGGCTGCCCTGGCCTCTCCCCGTGGCAACCTTTGTGTCTTGCCCCGGAAGACAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR-3UTR CAA 90 bp | ATGGCCCAGATTGTAGTCATCCCGTTGGCGGGGCCTCTCCTCCTTGGCCTGGGCAAGAAAGCAAAGAGGTaGATTGGGGTGGGGCATAGG | + |
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Preference number: 3 (lower is better) Translates to: MAQIVVIPLAGPLLLGLGKKAKR*IGVGHR Trigger: CCTATGCCCCACCCCAATCAACCTCTTTGCTTTCTT...GCCCAGGCCAAGGAGGAGAGGCCCCGCCAACGGGATGACTACAATCTGGGCCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR-3UTR CAA 90 bp | TCTTCCGGGGCAAGACACAAAGGTTGCCACGGGGAGAGGCCAGGGCAGCCAAGTGACAGACAGCAGGGCTaGTGGGGTTTTCTTCCTTTT | + |
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Preference number: 3 (lower is better) Translates to: SSGARHKGCHGERPGQPSDRQQG*WGFLPF Trigger: AAAAGGAAGAAAACCCCACAAGCCCTGCTGTCTGTC...ACTTGGCTGCCCTGGCCTCTCCCCGTGGCAACCTTTGTGTCTTGCCCCGGAAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR-3UTR CAA 90 bp | ACGAGAGGTCTGGAGAAGAGGCAGCCATCCTGGAACAGTGTGTACGCTGGATCACAGCGATGGTCTCTGTaGGGTGACAGCAGGCTCTGG | + |
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Preference number: 3 (lower is better) Translates to: TRGLEKRQPSWNSVYAGSQRWSL*GDSRLW Trigger: CCAGAGCCTGCTGTCACCCAACAGAGACCATCGCTG...TGATCCAGCGTACACACTGTTCCAGGATGGCTGCCTCTTCTCCAGACCTCTCGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR TCA 72 bp | TGTGTACGCTGGATCACAGCGATGGTCTCTGTTGGGTaGCAGCAGGCTCTGGGTCCTCTGGCCCAGTGTGTT | + |
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Preference number: 3 (lower is better) Translates to: CVRWITAMVSVG*QQALGPLAQCV Trigger: AACACACTGGGCCAGAGGACCCAGAGCCTGCTGTCACCCAACAGAGACCATCGCTGTGATCCAGCGTACACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR GCA 72 bp | AAACAGGACCAGAAACAGTGTCTGTTTGGTTGCTGGTaGTCCCCCACCCCCACAGCAATGCCGAAGTCTGTC | + |
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Preference number: 3 (lower is better) Translates to: KQDQKQCLFGCW*SPTPTAMPKSV Trigger: GACAGACTTCGGCATTGCTGTGGGGGTGGGGGAGCACCAGCAACCAAACAGACACTGTTTCTGGTCCTGTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR TCA 72 bp | AAGGGTGGGCAGGGCGCAGAGGGTGTACATGTACAATaGACTCAGTGTCTTCCGGGGCAAGACACAAAGGTT | + |
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Preference number: 3 (lower is better) Translates to: KGGQGAEGVHVQ*TQCLPGQDTKV Trigger: AACCTTTGTGTCTTGCCCCGGAAGACACTGAGTTCATTGTACATGTACACCCTCTGCGCCCTGCCCACCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR-3UTR CAA 90 bp | AATACAGAGCAATTCCAACCAACACCCATCTCTGAAAAAGGACAAACAGGAGGACCCATGTGGAAAGGGTaGGTTTCTGTTCCTTTTCCC | + |
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Preference number: 3 (lower is better) Translates to: NTEQFQPTPISEKGQTGGPMWKG*VSVPFP Trigger: GGGAAAAGGAACAGAAACCAACCCTTTCCACATGGG...TCCTCCTGTTTGTCCTTTTTCAGAGATGGGTGTTGGTTGGAATTGCTCTGTATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR CAA 72 bp | GAGGTCAGGGCTATGGCCCAGATTGTAGTCATCCCGTaGGCGGGGCCTCTCCTCCTTGGCCTGGGCCACTAC | + |
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Preference number: 4 (lower is better) Translates to: EVRAMAQIVVIP*AGPLLLGLGHY Trigger: GTAGTGGCCCAGGCCAAGGAGGAGAGGCCCCGCCAACGGGATGACTACAATCTGGGCCATAGCCCTGACCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| CDS-3UTR TCA 90 bp | TCTTCCGGGGCAAGACACAAAGGTTGCCACGGGGAGAGGCCAGGGCAGCCAAGTTCCCATTGGGCCGTCTaGGCCAGGACCCATTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: SSGARHKGCHGERPGQPSSHWAV*ARTHWK Trigger: TTTCCAATGGGTCCTGGCTCAGACGGCCCAATGGGA...ACTTGGCTGCCCTGGCCTCTCCCCGTGGCAACCTTTGTGTCTTGCCCCGGAAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR CAA 72 bp | AACGGTGGGGATCGAAAGACTGGAGGCCCCAGTGGCTaGGCACGAGAGGTCTGGAGAAGAGGCAGCCATCCT | + |
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Preference number: 4 (lower is better) Translates to: NGGDRKTGGPSG*AREVWRRGSHP Trigger: AGGATGGCTGCCTCTTCTCCAGACCTCTCGTGCCAAGCCACTGGGGCCTCCAGTCTTTCGATCCCCACCGTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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| 3UTR CAA 72 bp | AACAGTGTGTACGCTGGATCACAGCGATGGTCTCTGTaGGGTGACAGCAGGCTCTGGGTCCTCTGGCCCAGT | + |
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Preference number: 4 (lower is better) Translates to: NSVYAGSQRWSL*GDSRLWVLWPS Trigger: ACTGGGCCAGAGGACCCAGAGCCTGCTGTCACCCAACAGAGACCATCGCTGTGATCCAGCGTACACACTGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030367.15 |
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