Pregenerated sensors for SSBP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003992Ensembl transcript IDs: ENSMUST00000004094.15, ENSMUST00000042122.15, ENSMUST00000138488.2, ENSMUST00000231481.2
Found 108 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCTCCCAGTGCAAGCCCTCTGACCCAGGACAGAGCAGACAGGGCATaGAACTGCCACCTGAGAGCAGGGACAACAGAACAGACAGGTACC | + |
|
Preference number: 1 (lower is better) Translates to: PPSASPLTQDRADRA*NCHLRAGTTEQTGT Trigger: GGTACCTGTCTGTTCTGTTGTCCCTGCTCTCAGGTGGCAGTTCCATGCCCTGTCTGCTCTGTCCTGGGTCAGAGGGCTTGCACTGGGAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR CCA 90 bp | GACGAAGGCCAGGCGAGATGGAGAGCAGATGAGGAAAGGAAGCGCTaGGAGACCGAGCCCACTGAACACAGTTCAACTCTGTACAGTCAG | + |
|
Preference number: 1 (lower is better) Translates to: DEGQARWRADEERKR*ETEPTEHSSTLYSQ Trigger: CTGACTGTACAGAGTTGAACTGTGTTCAGTGGGCTCGGTCTCCCAGCGCTTCCTTTCCTCATCTGCTCTCCATCTCGCCTGGCCTTCGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR CCA 90 bp | TTCCCTTCTCAGAAGATGAATGACAGAGACGAAGGCCAGGCGAGATaGAGAGCAGATGAGGAAAGGAAGCGCTGGGAGACCGAGCCCACT | + |
|
Preference number: 1 (lower is better) Translates to: FPSQKMNDRDEGQAR*RADEERKRWETEPT Trigger: AGTGGGCTCGGTCTCCCAGCGCTTCCTTTCCTCATCTGCTCTCCATCTCGCCTGGCCTTCGTCTCTGTCATTCATCTTCTGAGAAGGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR GCA 90 bp | CACCTGAGAGCAGGGACAACAGAACAGACAGGTACCCATCAGTTCTaGTCCAGCAAGCAAGCTACTGGGTGGGTGAAACCAGAAACGCTG | + |
|
Preference number: 1 (lower is better) Translates to: HLRAGTTEQTGTHQF*SSKQATGWVKPETL Trigger: CAGCGTTTCTGGTTTCACCCACCCAGTAGCTTGCTTGCTGGAGCAGAACTGATGGGTACCTGTCTGTTCTGTTGTCCCTGCTCTCAGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR CCA 90 bp | TCTTTAGAAAGTCATTTGGTGGCACACGCCTTTAATCCCATCGCTTaGGAGGCAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTC | + |
|
Preference number: 1 (lower is better) Translates to: SLESHLVAHAFNPIA*EAGRRISEFEDSLV Trigger: GACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTGCCTCCCAAGCGATGGGATTAAAGGCGTGTGCCACCAAATGACTTTCTAAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138488.2 |
||
| 3UTR GCA 90 bp | TACACACAGATAATCATCGCAGTTCAGTTGGGGGCAATGCTAATGTaGCGCTCCGTACAGTTGCTTGAATCACATTTGGACCCGCTTTCT | + |
|
Preference number: 1 (lower is better) Translates to: YTQIIIAVQLGAMLM*RSVQLLESHLDPLS Trigger: AGAAAGCGGGTCCAAATGTGATTCAAGCAACTGTACGGAGCGGCACATTAGCATTGCCCCCAACTGAACTGCGATGATTATCTGTGTGTA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR GCA 90 bp | CTTATATACAAAGCACCACACTACTTTGCACAGAAGGTAACTGGGTaGCTGGTTGGACATGAGGATGAAGTCACTGTCTCTACTTGGTAC | + |
|
Preference number: 1 (lower is better) Translates to: LIYKAPHYFAQKVTG*LVGHEDEVTVSTWY Trigger: GTACCAAGTAGAGACAGTGACTTCATCCTCATGTCCAACCAGGCACCCAGTTACCTTCTGTGCAAAGTAGTGTGGTGCTTTGTATATAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR GCA 90 bp | ACTATCTTACAATGTCCTGTGGGTCAATGCACGTATGCGTATATGTaGATACAGATCTGCATATACGATGCATTCTCTTCCCACACATAC | + |
|
Preference number: 1 (lower is better) Translates to: TILQCPVGQCTYAYM*IQICIYDAFSSHTY Trigger: GTATGTGTGGGAAGAGAATGCATCGTATATGCAGATCTGTATGCACATATACGCATACGTGCATTGACCCACAGGACATTGTAAGATAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR TCA 90 bp | GCATCCCTGGAATGCCCAGCTAACATTTTCCATTTTCAGAAAGGATaGATCAATGTGGATCTGAGAGAAATCAATTGTCCAGAACCAACA | + |
|
Preference number: 1 (lower is better) Translates to: ASLECPANIFHFQKG*INVDLREINCPEPT Trigger: TGTTGGTTCTGGACAATTGATTTCTCTCAGATCCACATTGATTCATCCTTTCTGAAAATGGAAAATGTTAGCTGGGCATTCCAGGGATGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR CCA 90 bp | AGGATTTGGTGTTTGGATATAGGATTAAACGGAATCCCAAAGATCTaGGAAGTGTCATGCAAGCAGGGTGCTTTCATAAGGGAGATAATT | + |
|
Preference number: 1 (lower is better) Translates to: RIWCLDIGLNGIPKI*EVSCKQGAFIREII Trigger: AATTATCTCCCTTATGAAAGCACCCTGCTTGCATGACACTTCCCAGATCTTTGGGATTCCGTTTAATCCTATATCCAAACACCAAATCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR-3UTR GCA 90 bp | ACCCAGGACAGAGCAGACAGGGCATGGAACTGCCACCTGAGAGCAGGGACAACAAGCACCACACTACTTTaGACAGAAGGTAACTGGGTG | + |
|
Preference number: 2 (lower is better) Translates to: TQDRADRAWNCHLRAGTTSTTLL*TEGNWV Trigger: CACCCAGTTACCTTCTGTGCAAAGTAGTGTGGTGCT...TGTTGTCCCTGCTCTCAGGTGGCAGTTCCATGCCCTGTCTGCTCTGTCCTGGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR-3UTR CCA 90 bp | GCCTCCCAGTGCAAGCCCTCTGACCCAGGACAGAGCAGACAGGGCATGGAACTGTCATTCTCTGCTCTCTaGGCTGAAAACCTGAATCAT | + |
|
Preference number: 2 (lower is better) Translates to: ASQCKPSDPGQSRQGMELSFSAL*AENLNH Trigger: ATGATTCAGGTTTTCAGCCCAGAGAGCAGAGAATGA...CAGTTCCATGCCCTGTCTGCTCTGTCCTGGGTCAGAGGGCTTGCACTGGGAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR-3UTR CCA 90 bp | CCACCTGAGAGCAGGGACAACAGAACAGACAGGTACCCATCAGTTCTGCTCCAGTCTTACAATGTCCTGTaGGTCAATGCACGTATGCGT | + |
|
Preference number: 2 (lower is better) Translates to: PPESRDNRTDRYPSVLLQSYNVL*VNARMR Trigger: ACGCATACGTGCATTGACCCACAGGACATTGTAAGA...CTGGAGCAGAACTGATGGGTACCTGTCTGTTCTGTTGTCCCTGCTCTCAGGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR CAA 90 bp | GCATTCTCTTCCCACACATACACACAGATAATCATCGCAGTTCAGTaGGGGGCAATGCTAATGTGCCGCTCCGTACAGTTGCTTGAATCA | + |
|
Preference number: 2 (lower is better) Translates to: AFSSHTYTQIIIAVQ*GAMLMCRSVQLLES Trigger: TGATTCAAGCAACTGTACGGAGCGGCACATTAGCATTGCCCCCAACTGAACTGCGATGATTATCTGTGTGTATGTGTGGGAAGAGAATGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR-3UTR TCA 90 bp | CAGTTGCTTGAATCACATTTGGACCCGCTTTCTTCTCAAAATAGGGGAGAGAGCTCTGTAGTAGTTCTGTaGTGGGCTGACTCACGATGG | + |
|
Preference number: 2 (lower is better) Translates to: QLLESHLDPLSSQNRGESSVVVL*WADSRW Trigger: CCATCGTGAGTCAGCCCATCACAGAACTACTACAGA...GCTCTCTCCCCTATTTTGAGAAGAAAGCGGGTCCAAATGTGATTCAAGCAACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR-3UTR TCA 90 bp | TTCTCTTCCCACACATACACACAGATAATCATCGCAGTTCAGTTGGGGGCAATGCTCCGTACAGTTGCTTaGATCACATTTGGACCCGCT | + |
|
Preference number: 2 (lower is better) Translates to: FSSHTYTQIIIAVQLGAMLRTVA*ITFGPA Trigger: AGCGGGTCCAAATGTGATTCAAGCAACTGTACGGAG...CATTGCCCCCAACTGAACTGCGATGATTATCTGTGTGTATGTGTGGGAAGAGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR-3UTR TCA 90 bp | TTGAATCACATTTGGACCCGCTTTCTTCTCAAAATAGGGGAGAGAGCAGGAACTTCTGTAGTAGTTCTGTaGTGGGCTGACTCACGATGG | + |
|
Preference number: 2 (lower is better) Translates to: LNHIWTRFLLKIGERAGTSVVVL*WADSRW Trigger: CCATCGTGAGTCAGCCCATCACAGAACTACTACAGA...AGTTCCTGCTCTCTCCCCTATTTTGAGAAGAAAGCGGGTCCAAATGTGATTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR-3UTR TCA 90 bp | AGTCAGGTGGTTAAGAACCATTCAGGACTTAAGACTGACACGAACTTTCAAACGAATGGACTTCCTGTGTaGACTGCCTGTGACAGGTTC | + |
|
Preference number: 2 (lower is better) Translates to: SQVVKNHSGLKTDTNFQTNGLPV*TACDRF Trigger: GAACCTGTCACAGGCAGTTCACACAGGAAGTCCATT...CGTTTGAAAGTTCGTGTCAGTCTTAAGTCCTGAATGGTTCTTAACCACCTGACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR-3UTR GCA 90 bp | AGAAAGCTAACCTCTGGCAAGCAGCATATACATCAAGAGGACATGAATGGGCCAGGGTCAATGCACGTATaGGTATATGTGCATACAGAT | + |
|
Preference number: 2 (lower is better) Translates to: RKLTSGKQHIHQEDMNGPGSMHV*VYVHTD Trigger: ATCTGTATGCACATATACGCATACGTGCATTGACCC...TGGCCCATTCATGTCCTCTTGATGTATATGCTGCTTGCCAGAGGTTAGCTTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR-3UTR TCA 90 bp | TGTACACAGCACAAAATAGTTGGGGAAGGGCAGGAGCAACCTTTAATAATTAAACTCCGTACAGTTGCTTaGATCACATTTGGACCCGCT | + |
|
Preference number: 2 (lower is better) Translates to: CTQHKIVGEGQEQPLIIKLRTVA*ITFGPA Trigger: AGCGGGTCCAAATGTGATTCAAGCAACTGTACGGAG...TTTAATTATTAAAGGTTGCTCCTGCCCTTCCCCAACTATTTTGTGCTGTGTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR-3UTR CCA 90 bp | CACACATACACACAGATAATCATCGCAGTTCAGTTGGGGGCAATGCTAATGTGCTGCTTGAATCACATTTaGACCCGCTTTCTTCTCAAA | + |
|
Preference number: 2 (lower is better) Translates to: HTYTQIIIAVQLGAMLMCCLNHI*TRFLLK Trigger: TTTGAGAAGAAAGCGGGTCCAAATGTGATTCAAGCA...GCACATTAGCATTGCCCCCAACTGAACTGCGATGATTATCTGTGTGTATGTGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR-3UTR GCA 90 bp | AATAACTTATATAAAGCAGTGATGTACACAGCACAAAATAGTTGGGGAAGGGCAGCCGCTCCGTACAGTTaGTTGAATCACATTTGGACC | + |
|
Preference number: 2 (lower is better) Translates to: NNLYKAVMYTAQNSWGRAAAPYS*LNHIWT Trigger: GGTCCAAATGTGATTCAAGCAACTGTACGGAGCGGC...TGCCCTTCCCCAACTATTTTGTGCTGTGTACATCACTGCTTTATATAAGTTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR-3UTR GCA 90 bp | AGAAAGCTAACCTCTGGCAAGCAGCATATACATCAAGAGGACATGAATGGGCCAACGTATGCGTATATGTaGATACAGATCTGCATATAC | + |
|
Preference number: 2 (lower is better) Translates to: RKLTSGKQHIHQEDMNGPTYAYM*IQICIY Trigger: GTATATGCAGATCTGTATGCACATATACGCATACGT...TGGCCCATTCATGTCCTCTTGATGTATATGCTGCTTGCCAGAGGTTAGCTTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR CAA 90 bp | GGTAGAGATCAGTGGTTGTTTGTATCTCAGTTAGAACAGCAAGGGTaGCAGAGCTGTCTTTTCAATTATAAAATAAACTCTCTATGCTTT | + |
|
Preference number: 2 (lower is better) Translates to: GRDQWLFVSQLEQQG*QSCLFNYKINSLCF Trigger: AAAGCATAGAGAGTTTATTTTATAATTGAAAAGACAGCTCTGCAACCCTTGCTGTTCTAACTGAGATACAAACAACCACTGATCTCTACC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR TCA 72 bp | TTCAAACGTCGGTGCGTTAGGGAGGGCAGGGAGGGGTaGCCGGATGCATGCTCACACCTGCTGCCCATTGTC | + |
|
Preference number: 3 (lower is better) Translates to: FKRRCVREGREG*PDACSHLLPIV Trigger: GACAATGGGCAGCAGGTGTGAGCATGCATCCGGTCACCCCTCCCTGCCCTCCCTAACGCACCGACGTTTGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR CCA 72 bp | GCAAGCCCTCTGACCCAGGACAGAGCAGACAGGGCATaGAACTGCCACCTGAGAGCAGGGACAACAGAACAG | + |
|
Preference number: 3 (lower is better) Translates to: ASPLTQDRADRA*NCHLRAGTTEQ Trigger: CTGTTCTGTTGTCCCTGCTCTCAGGTGGCAGTTCCATGCCCTGTCTGCTCTGTCCTGGGTCAGAGGGCTTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR TCA 72 bp | CCCAGGACAGAGCAGACAGGGCATGGAACTGCCACCTaGGAGCAGGGACAACAGAACAGACAGGTACCCATC | + |
|
Preference number: 3 (lower is better) Translates to: PRTEQTGHGTAT*EQGQQNRQVPI Trigger: GATGGGTACCTGTCTGTTCTGTTGTCCCTGCTCTCAGGTGGCAGTTCCATGCCCTGTCTGCTCTGTCCTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR GCA 72 bp | CCTCTGACCCAGGACAGAGCAGACAGGGCATGGAACTaGCACCTGAGAGCAGGGACAACAGAACAGACAGGT | + |
|
Preference number: 3 (lower is better) Translates to: PLTQDRADRAWN*HLRAGTTEQTG Trigger: ACCTGTCTGTTCTGTTGTCCCTGCTCTCAGGTGGCAGTTCCATGCCCTGTCTGCTCTGTCCTGGGTCAGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR GCA 72 bp | GCAGGGAGGGGTGACCGGATGCATGCTCACACCTGCTaGCCATTGTCACATTTTATGGGTGCATTCTATGCC | + |
|
Preference number: 3 (lower is better) Translates to: AGRGDRMHAHTC*PLSHFMGAFYA Trigger: GGCATAGAATGCACCCATAAAATGTGACAATGGGCAGCAGGTGTGAGCATGCATCCGGTCACCCCTCCCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR CCA 72 bp | CAGAAGATGAATGACAGAGACGAAGGCCAGGCGAGATaGAGAGCAGATGAGGAAAGGAAGCGCTGGGAGACC | + |
|
Preference number: 3 (lower is better) Translates to: QKMNDRDEGQAR*RADEERKRWET Trigger: GGTCTCCCAGCGCTTCCTTTCCTCATCTGCTCTCCATCTCGCCTGGCCTTCGTCTCTGTCATTCATCTTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR CCA 72 bp | AGTCATTTGGTGGCACACGCCTTTAATCCCATCGCTTaGGAGGCAGGCAGGCGGATTTCTGAGTTCGAGGAC | + |
|
Preference number: 3 (lower is better) Translates to: SHLVAHAFNPIA*EAGRRISEFED Trigger: GTCCTCGAACTCAGAAATCCGCCTGCCTGCCTCCCAAGCGATGGGATTAAAGGCGTGTGCCACCAAATGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138488.2 |
||
| 3UTR-3UTR CAA 90 bp | CCACCTGAGAGCAGGGACAACAGAACAGACAGGTACCCATCAGTTCTGCTCCAGGCTCCGTACAGTTGCTaGAATCACATTTGGACCCGC | + |
|
Preference number: 3 (lower is better) Translates to: PPESRDNRTDRYPSVLLQAPYSC*NHIWTR Trigger: GCGGGTCCAAATGTGATTCAAGCAACTGTACGGAGC...CTGGAGCAGAACTGATGGGTACCTGTCTGTTCTGTTGTCCCTGCTCTCAGGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR GCA 72 bp | GCAGGGACAACAGAACAGACAGGTACCCATCAGTTCTaGTCCAGCAAGCAAGCTACTGGGTGGGTGAAACCA | + |
|
Preference number: 3 (lower is better) Translates to: AGTTEQTGTHQF*SSKQATGWVKP Trigger: TGGTTTCACCCACCCAGTAGCTTGCTTGCTGGAGCAGAACTGATGGGTACCTGTCTGTTCTGTTGTCCCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR CCA 72 bp | CTGGTTGGACATGAGGATGAAGTCACTGTCTCTACTTaGTACAACCTGGGGCTCACGGGCAACTTGCTTCAG | + |
|
Preference number: 3 (lower is better) Translates to: LVGHEDEVTVST*YNLGLTGNLLQ Trigger: CTGAAGCAAGTTGCCCGTGAGCCCCAGGTTGTACCAAGTAGAGACAGTGACTTCATCCTCATGTCCAACCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR CCA 72 bp | AGGTACCCATCAGTTCTGCTCCAGCAAGCAAGCTACTaGGTGGGTGAAACCAGAAACGCTGCAGAATCCTCT | + |
|
Preference number: 3 (lower is better) Translates to: RYPSVLLQQASY*VGETRNAAESS Trigger: AGAGGATTCTGCAGCGTTTCTGGTTTCACCCACCCAGTAGCTTGCTTGCTGGAGCAGAACTGATGGGTACCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR CCA 72 bp | TGTACAGTCAGAGAGAAGGAAGTGGCCACTAGTGACTaGGGGGAAATGGACTTCCTGTGTGAACTGCCTGTG | + |
|
Preference number: 3 (lower is better) Translates to: CTVREKEVATSD*GEMDFLCELPV Trigger: CACAGGCAGTTCACACAGGAAGTCCATTTCCCCCCAGTCACTAGTGGCCACTTCCTTCTCTCTGACTGTACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR TCA 72 bp | GGTAGGAATCATTTGCTTCCCTTCTCAGAAGATGAATaGCAGAGACGAAGGCCAGGCGAGATGGAGAGCAGA | + |
|
Preference number: 3 (lower is better) Translates to: GRNHLLPFSEDE*QRRRPGEMESR Trigger: TCTGCTCTCCATCTCGCCTGGCCTTCGTCTCTGTCATTCATCTTCTGAGAAGGGAAGCAAATGATTCCTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR GCA 72 bp | AAAGCACCACACTACTTTGCACAGAAGGTAACTGGGTaGCTGGTTGGACATGAGGATGAAGTCACTGTCTCT | + |
|
Preference number: 3 (lower is better) Translates to: KAPHYFAQKVTG*LVGHEDEVTVS Trigger: AGAGACAGTGACTTCATCCTCATGTCCAACCAGGCACCCAGTTACCTTCTGTGCAAAGTAGTGTGGTGCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR GCA 72 bp | ATAATCATCGCAGTTCAGTTGGGGGCAATGCTAATGTaGCGCTCCGTACAGTTGCTTGAATCACATTTGGAC | + |
|
Preference number: 3 (lower is better) Translates to: IIIAVQLGAMLM*RSVQLLESHLD Trigger: GTCCAAATGTGATTCAAGCAACTGTACGGAGCGGCACATTAGCATTGCCCCCAACTGAACTGCGATGATTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR CCA 72 bp | CTCTGGCAAGCAGCATATACATCAAGAGGACATGAATaGGCCAACAGCCGTAGAATGCATGACAATGTTGGA | + |
|
Preference number: 3 (lower is better) Translates to: LWQAAYTSRGHE*ANSRRMHDNVG Trigger: TCCAACATTGTCATGCATTCTACGGCTGTTGGCCCATTCATGTCCTCTTGATGTATATGCTGCTTGCCAGAG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR TCA 72 bp | GAAGTGTACTGTATGAAGCCCTGGCTGAGCTACTGTTaGGGGGTTTCCTTATATACAAAGCACCACACTACT | + |
|
Preference number: 3 (lower is better) Translates to: EVYCMKPWLSYC*GVSLYTKHHTT Trigger: AGTAGTGTGGTGCTTTGTATATAAGGAAACCCCTCAACAGTAGCTCAGCCAGGGCTTCATACAGTACACTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR CCA 72 bp | TGCATGCTCACACCTGCTGCCCATTGTCACATTTTATaGGTGCATTCTATGCCCAAAATATGTGAGTACTGC | + |
|
Preference number: 3 (lower is better) Translates to: CMLTPAAHCHIL*VHSMPKICEYC Trigger: GCAGTACTCACATATTTTGGGCATAGAATGCACCCATAAAATGTGACAATGGGCAGCAGGTGTGAGCATGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR-3UTR CAA 90 bp | AAAGCAGTGATGTACACAGCACAAAATAGTTGGGGAAGGGCAGGAGCAACCTTTTTGCTTGAATCACATTaGGACCCGCTTTCTTCTCAA | + |
|
Preference number: 3 (lower is better) Translates to: KAVMYTAQNSWGRAGATFLLESH*DPLSSQ Trigger: TTGAGAAGAAAGCGGGTCCAAATGTGATTCAAGCAA...AAAGGTTGCTCCTGCCCTTCCCCAACTATTTTGTGCTGTGTACATCACTGCTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR-3UTR CAA 90 bp | CACACATACACACAGATAATCATCGCAGTTCAGTTGGGGGCAATGCTAATGTGCTTGCTTGAATCACATTaGGACCCGCTTTCTTCTCAA | + |
|
Preference number: 3 (lower is better) Translates to: HTYTQIIIAVQLGAMLMCLLESH*DPLSSQ Trigger: TTGAGAAGAAAGCGGGTCCAAATGTGATTCAAGCAA...GCACATTAGCATTGCCCCCAACTGAACTGCGATGATTATCTGTGTGTATGTGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR-3UTR CAA 90 bp | ATTCTCTTCCCACACATACACACAGATAATCATCGCAGTTCAGTTGGGGGCAATTTGTCTGAGATTCCTTaGTCTAACTGTACACGACGA | + |
|
Preference number: 3 (lower is better) Translates to: ILFPHIHTDNHRSSVGGNLSEIP*SNCTRR Trigger: TCGTCGTGTACAGTTAGACAAAGGAATCTCAGACAA...ATTGCCCCCAACTGAACTGCGATGATTATCTGTGTGTATGTGTGGGAAGAGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR-3UTR CAA 90 bp | TGTACACAGCACAAAATAGTTGGGGAAGGGCAGGAGCAACCTTTAATAATTAAATGCCGCTCCGTACAGTaGCTTGAATCACATTTGGAC | + |
|
Preference number: 3 (lower is better) Translates to: CTQHKIVGEGQEQPLIIKCRSVQ*LESHLD Trigger: GTCCAAATGTGATTCAAGCAACTGTACGGAGCGGCA...TTTAATTATTAAAGGTTGCTCCTGCCCTTCCCCAACTATTTTGTGCTGTGTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR-3UTR CAA 90 bp | AGTCAGGTGGTTAAGAACCATTCAGGACTTAAGACTGACACGAACTTTCAAACGTTGTCTGAGATTCCTTaGTCTAACTGTACACGACGA | + |
|
Preference number: 3 (lower is better) Translates to: SQVVKNHSGLKTDTNFQTLSEIP*SNCTRR Trigger: TCGTCGTGTACAGTTAGACAAAGGAATCTCAGACAA...CGTTTGAAAGTTCGTGTCAGTCTTAAGTCCTGAATGGTTCTTAACCACCTGACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR GCA 72 bp | CATCAAGAGGACATGAATGGGCCAACAGCCGTAGAATaGATGACAATGTTGGATTTCTTACCAGAAAAACAA | + |
|
Preference number: 3 (lower is better) Translates to: HQEDMNGPTAVE*MTMLDFLPEKQ Trigger: TTGTTTTTCTGGTAAGAAATCCAACATTGTCATGCATTCTACGGCTGTTGGCCCATTCATGTCCTCTTGATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR CCA 72 bp | TTTTACACTGGGCATCTTCACAGTAAGAAAGTCAGGTaGTTAAGAACCATTCAGGACTTAAGACTGACACGA | + |
|
Preference number: 3 (lower is better) Translates to: FYTGHLHSKKVR*LRTIQDLRLTR Trigger: TCGTGTCAGTCTTAAGTCCTGAATGGTTCTTAACCACCTGACTTTCTTACTGTGAAGATGCCCAGTGTAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR TCA 72 bp | TTTTCCATTTTCAGAAAGGATGAATCAATGTGGATCTaGGAGAAATCAATTGTCCAGAACCAACAGCAGGCA | + |
|
Preference number: 3 (lower is better) Translates to: FSIFRKDESMWI*EKSIVQNQQQA Trigger: TGCCTGCTGTTGGTTCTGGACAATTGATTTCTCTCAGATCCACATTGATTCATCCTTTCTGAAAATGGAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| CDS-3UTR CCA 90 bp | CTTGGGAGGCAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCTGCAGGGAACTTCTCCCGGGCCTaGCTGTCGGACGGGACGGCG | + |
|
Preference number: 4 (lower is better) Translates to: LGRQAGGFLSSRTAWSAGNFSRA*LSDGTA Trigger: CGCCGTCCCGTCCGACAGCCAGGCCCGGGAGAAGTT...CCCTGCAGACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTGCCTCCCAAG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138488.2 |
||
| CDS-3UTR CCA 90 bp | ACCCAGGACAGAGCAGACAGGGCATGGAACTGCCACCTGAGAGCAGGGACAACAGATGGGTGTTCCTGGTaGTCCTCCACCTCCCGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: TQDRADRAWNCHLRAGTTDGCSW*SSTSRR Trigger: CCTCCGGGAGGTGGAGGACCACCAGGAACACCCATC...TGTTGTCCCTGCTCTCAGGTGGCAGTTCCATGCCCTGTCTGCTCTGTCCTGGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| CDS-3UTR GCA 90 bp | GCACACGCCTTTAATCCCATCGCTTGGGAGGCAGGCAGGCGGATTTCTGAGTTCCGGACGGGACGGCGCTaGTGTTACTCTTGCCTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: AHAFNPIAWEAGRRISEFRTGRR*CYSCLC Trigger: GCAAAGGCAAGAGTAACAGCAGCGCCGTCCCGTCCG...GAACTCAGAAATCCGCCTGCCTGCCTCCCAAGCGATGGGATTAAAGGCGTGTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138488.2 |
||
| CDS-3UTR GCA 90 bp | CCACCTGAGAGCAGGGACAACAGAACAGACAGGTACCCATCAGTTCTGCTCCAGCGGGACCTACTGGCATaGCATCTCCTGGGGGCATGT | + |
|
Preference number: 4 (lower is better) Translates to: PPESRDNRTDRYPSVLLQRDLLA*HLLGAC Trigger: ACATGCCCCCAGGAGATGGCATGCCAGTAGGTCCCG...CTGGAGCAGAACTGATGGGTACCTGTCTGTTCTGTTGTCCCTGCTCTCAGGTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| CDS-3UTR CCA 90 bp | TTCTCTTCCCACACATACACACAGATAATCATCGCAGTTCAGTTGGGGGCAATGAACTTCTCCCGGGCCTaGCTGTCGGACGGGACGGCG | + |
|
Preference number: 4 (lower is better) Translates to: FSSHTYTQIIIAVQLGAMNFSRA*LSDGTA Trigger: CGCCGTCCCGTCCGACAGCCAGGCCCGGGAGAAGTT...CATTGCCCCCAACTGAACTGCGATGATTATCTGTGTGTATGTGTGGGAAGAGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR CCA 90 bp | CCACCTGAGAGCAGGGACAACAGAACAGACAGGTACCCATCAGTTCTGCTCCAGGGGCACCATTCCTCTTaGGGGAGTCATTCTCTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: PPESRDNRTDRYPSVLLQGHHSS*GSHSLH Trigger: ATGCAGAGAATGACTCCCCCAAGAGGAATGGTGCCC...CTGGAGCAGAACTGATGGGTACCTGTCTGTTCTGTTGTCCCTGCTCTCAGGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| CDS-3UTR CCA 90 bp | TTCTCTTCCCACACATACACACAGATAATCATCGCAGTTCAGTTGGGGGCAATGTGGCACGGGACCTACTaGCATGCCATCTCCTGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: FSSHTYTQIIIAVQLGAMWHGTY*HAISWG Trigger: CCCCCAGGAGATGGCATGCCAGTAGGTCCCGTGCCA...CATTGCCCCCAACTGAACTGCGATGATTATCTGTGTGTATGTGTGGGAAGAGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| CDS-3UTR CCA 90 bp | TCATTCTCTGCTCTCTGGGCTGAAAACCTGAATCATGTCAGTGTGTCTGTCTGTGTTAGGTATCCTCAATaGGGGCCTCGGGCCGCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: SFSALWAENLNHVSVSVCVRYPQ*GPRAAR Trigger: CCTGGCGGCCCGAGGCCCCCATTGAGGATACCTAAC...ACAGACAGACACACTGACATGATTCAGGTTTTCAGCCCAGAGAGCAGAGAATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| CDS-3UTR CCA 90 bp | CCACCTGAGAGCAGGGACAACAGAACAGACAGGTACCCATCAGTTCTGCTCCAGCTTGGAGTGCCCGGCTaGTTACTCAGGCTCATATTA | + |
|
Preference number: 4 (lower is better) Translates to: PPESRDNRTDRYPSVLLQLGVPG*LLRLIL Trigger: TAATATGAGCCTGAGTAACCAGCCGGGCACTCCAAG...CTGGAGCAGAACTGATGGGTACCTGTCTGTTCTGTTGTCCCTGCTCTCAGGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| CDS-3UTR GCA 90 bp | AAAGCAGTGATGTACACAGCACAAAATAGTTGGGGAAGGGCAGGAGCAACCTTTCGGACGGGACGGCGCTaGTGTTACTCTTGCCTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: KAVMYTAQNSWGRAGATFRTGRR*CYSCLC Trigger: GCAAAGGCAAGAGTAACAGCAGCGCCGTCCCGTCCG...AAAGGTTGCTCCTGCCCTTCCCCAACTATTTTGTGCTGTGTACATCACTGCTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR GCA 90 bp | CAGTTGCTTGAATCACATTTGGACCCGCTTTCTTCTCAAAATAGGGGAGAGAGCCGTCATCCCTTGGAGTaGCCGGCTGGTTACTCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: QLLESHLDPLSSQNRGESRHPLE*PAGYSG Trigger: GCCTGAGTAACCAGCCGGGCACTCCAAGGGATGACG...GCTCTCTCCCCTATTTTGAGAAGAAAGCGGGTCCAAATGTGATTCAAGCAACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR CCA 90 bp | GTGGTCTGGTTGTCTGAGATTCCTTTGTCTAACTGTACACGACGAGTAGTTTTCGATGGGTGTTCCTGGTaGTCCTCCACCTCCCGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: VVWLSEIPLSNCTRRVVFDGCSW*SSTSRR Trigger: CCTCCGGGAGGTGGAGGACCACCAGGAACACCCATC...GAAAACTACTCGTCGTGTACAGTTAGACAAAGGAATCTCAGACAACCAGACCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR GCA 90 bp | TCCGTACAGTTGCTTGAATCACATTTGGACCCGCTTTCTTCTCAAAATAGGGGACGGACGGGACGGCGCTaGTGTTACTCTTGCCTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: SVQLLESHLDPLSSQNRGRTGRR*CYSCLC Trigger: GCAAAGGCAAGAGTAACAGCAGCGCCGTCCCGTCCG...TCCCCTATTTTGAGAAGAAAGCGGGTCCAAATGTGATTCAAGCAACTGTACGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR GCA 90 bp | CAGTTGGGGGCAATGCTAATGTGCCGCTCCGTACAGTTGCTTGAATCACATTTGCAGTGGGGGTCTCATTaGACCTCCATAGTTCTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: QLGAMLMCRSVQLLESHLQWGSH*TSIVLW Trigger: CCACAGAACTATGGAGGTGCAATGAGACCCCCACTG...CAAATGTGATTCAAGCAACTGTACGGAGCGGCACATTAGCATTGCCCCCAACTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR CCA 90 bp | CAGTTGGGGGCAATGCTAATGTGCCGCTCCGTACAGTTGCTTGAATCACATTTGGGTTTCCCGTCTCTCTaGAGCTGCACAGTAGAGATC | + |
|
Preference number: 4 (lower is better) Translates to: QLGAMLMCRSVQLLESHLGFPSL*SCTVEI Trigger: GATCTCTACTGTGCAGCTCCAGAGAGACGGGAAACC...CAAATGTGATTCAAGCAACTGTACGGAGCGGCACATTAGCATTGCCCCCAACTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR GCA 90 bp | TCATTCTCTGCTCTCTGGGCTGAAAACCTGAATCATGTCAGTGTGTCTGTCTGTCACGGGGCTGGGAGCTaGTGCAGCACTATAATCATG | + |
|
Preference number: 4 (lower is better) Translates to: SFSALWAENLNHVSVSVCHGAGS*CSTIIM Trigger: CATGATTATAGTGCTGCAGCAGCTCCCAGCCCCGTG...ACAGACAGACACACTGACATGATTCAGGTTTTCAGCCCAGAGAGCAGAGAATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| CDS-3UTR CCA 90 bp | CAGTTGGGGGCAATGCTAATGTGCCGCTCCGTACAGTTGCTTGAATCACATTTGACACCTCCAAGTGCCTaGTTAGGTATCCTCAATGGG | + |
|
Preference number: 4 (lower is better) Translates to: QLGAMLMCRSVQLLESHLTPPSA*LGILNG Trigger: CCCATTGAGGATACCTAACCAGGCACTTGGAGGTGT...CAAATGTGATTCAAGCAACTGTACGGAGCGGCACATTAGCATTGCCCCCAACTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR CCA 90 bp | TACAGTTGCTTGAATCACATTTGGACCCGCTTTCTTCTCAAAATAGGGGAGAGACATGATGGGTGTTCCTaGTGGTCCTCCACCTCCCGG | + |
|
Preference number: 4 (lower is better) Translates to: YSCLNHIWTRFLLKIGERHDGCS*WSSTSR Trigger: CCGGGAGGTGGAGGACCACCAGGAACACCCATCATG...TCTCTCCCCTATTTTGAGAAGAAAGCGGGTCCAAATGTGATTCAAGCAACTGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR CAA 72 bp | CAGTTGGGGGCAATGCTAATGTGCCGCTCCGTACAGTaGCTTGAATCACATTTGGACCCGCTTTCTTCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: QLGAMLMCRSVQ*LESHLDPLSSQ Trigger: TTGAGAAGAAAGCGGGTCCAAATGTGATTCAAGCAACTGTACGGAGCGGCACATTAGCATTGCCCCCAACTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR CAA 72 bp | TCCCACACATACACACAGATAATCATCGCAGTTCAGTaGGGGGCAATGCTAATGTGCCGCTCCGTACAGTTG | + |
|
Preference number: 4 (lower is better) Translates to: SHTYTQIIIAVQ*GAMLMCRSVQL Trigger: CAACTGTACGGAGCGGCACATTAGCATTGCCCCCAACTGAACTGCGATGATTATCTGTGTGTATGTGTGGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR TCA 90 bp | TTCTCTTCCCACACATACACACAGATAATCATCGCAGTTCAGTTGGGGGCAATGACCCATAGGACCATCTaGTCCAGGGCCCATTGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: FSSHTYTQIIIAVQLGAMTHRTI*SRAHWK Trigger: TTTCCAATGGGCCCTGGATCAGATGGTCCTATGGGT...CATTGCCCCCAACTGAACTGCGATGATTATCTGTGTGTATGTGTGGGAAGAGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR TCA 90 bp | CAGTTGCTTGAATCACATTTGGACCCGCTTTCTTCTCAAAATAGGGGAGAGAGCACCCATAGGACCATCTaGTCCAGGGCCCATTGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: QLLESHLDPLSSQNRGESTHRTI*SRAHWK Trigger: TTTCCAATGGGCCCTGGATCAGATGGTCCTATGGGT...GCTCTCTCCCCTATTTTGAGAAGAAAGCGGGTCCAAATGTGATTCAAGCAACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR GCA 90 bp | AAAGCAGTGATGTACACAGCACAAAATAGTTGGGGAAGGGCAGGAGCAACCTTTGGGGCTGGGAGCTGCTaGAGCACTATAATCATGGAA | + |
|
Preference number: 4 (lower is better) Translates to: KAVMYTAQNSWGRAGATFGAGSC*STIIME Trigger: TTCCATGATTATAGTGCTGCAGCAGCTCCCAGCCCC...AAAGGTTGCTCCTGCCCTTCCCCAACTATTTTGTGCTGTGTACATCACTGCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| CDS-3UTR CCA 90 bp | GTAGAAATGATCATAGGAAATCTGAATAAACATACAACACCATTTCTCGCTGTGAACTTCTCCCGGGCCTaGCTGTCGGACGGGACGGCG | + |
|
Preference number: 4 (lower is better) Translates to: VEMIIGNLNKHTTPFLAVNFSRA*LSDGTA Trigger: CGCCGTCCCGTCCGACAGCCAGGCCCGGGAGAAGTT...CACAGCGAGAAATGGTGTTGTATGTTTATTCAGATTTCCTATGATCATTTCTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| CDS-3UTR CCA 90 bp | TGTACACAGCACAAAATAGTTGGGGAAGGGCAGGAGCAACCTTTAATAATTAAAGTTAGGTATCCTCAATaGGGGCCTCGGGCCGCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: CTQHKIVGEGQEQPLIIKVRYPQ*GPRAAR Trigger: CCTGGCGGCCCGAGGCCCCCATTGAGGATACCTAAC...TTTAATTATTAAAGGTTGCTCCTGCCCTTCCCCAACTATTTTGTGCTGTGTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR CAA 72 bp | CTAATGTGCCGCTCCGTACAGTTGCTTGAATCACATTaGGACCCGCTTTCTTCTCAAAATAGGGGAGAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: LMCRSVQLLESH*DPLSSQNRGES Trigger: GCTCTCTCCCCTATTTTGAGAAGAAAGCGGGTCCAAATGTGATTCAAGCAACTGTACGGAGCGGCACATTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR TCA 90 bp | CCCTGGAATGCCCAGCTAACATTTTCCATTTTCAGAAAGGATGAATCAATGTGGGGCGACATAAAAGGCTaGAAGAACCCTGGTGGCACG | + |
|
Preference number: 4 (lower is better) Translates to: PWNAQLTFSIFRKDESMWGDIKG*KNPGGT Trigger: CGTGCCACCAGGGTTCTTTCAGCCTTTTATGTCGCC...CCACATTGATTCATCCTTTCTGAAAATGGAAAATGTTAGCTGGGCATTCCAGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| CDS-3UTR CCA 90 bp | CACACATACACACAGATAATCATCGCAGTTCAGTTGGGGGCAATGCTAATGTGCTCCTTGTTGTCGTGTTaGATCCATTCCACTGGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: HTYTQIIIAVQLGAMLMCSLLSC*IHSTGE Trigger: CTCCCCAGTGGAATGGATCCAACACGACAACAAGGA...GCACATTAGCATTGCCCCCAACTGAACTGCGATGATTATCTGTGTGTATGTGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR CCA 90 bp | TCCGTACAGTTGCTTGAATCACATTTGGACCCGCTTTCTTCTCAAAATAGGGGAGGGCACCATTCCTCTTaGGGGAGTCATTCTCTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: SVQLLESHLDPLSSQNRGGHHSS*GSHSLH Trigger: ATGCAGAGAATGACTCCCCCAAGAGGAATGGTGCCC...TCCCCTATTTTGAGAAGAAAGCGGGTCCAAATGTGATTCAAGCAACTGTACGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR CCA 90 bp | GTGGTCTGGTTGTCTGAGATTCCTTTGTCTAACTGTACACGACGAGTAGTTTTCCGCTCATGGTCATGCTaGGGGAGTAACTCTCACTCT | + |
|
Preference number: 4 (lower is better) Translates to: VVWLSEIPLSNCTRRVVFRSWSC*GSNSHS Trigger: AGAGTGAGAGTTACTCCCCCAGCATGACCATGAGCG...GAAAACTACTCGTCGTGTACAGTTAGACAAAGGAATCTCAGACAACCAGACCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR GCA 90 bp | TTGAATCACATTTGGACCCGCTTTCTTCTCAAAATAGGGGAGAGAGCAGGAACTCCGTCTCTCTGGAGCTaGACAGTAGAGATCCCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: LNHIWTRFLLKIGERAGTPSLWS*TVEIPK Trigger: TTTTGGGATCTCTACTGTGCAGCTCCAGAGAGACGG...AGTTCCTGCTCTCTCCCCTATTTTGAGAAGAAAGCGGGTCCAAATGTGATTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR GCA 90 bp | GTGGTCTGGTTGTCTGAGATTCCTTTGTCTAACTGTACACGACGAGTAGTTTTCCCGTCTCTCTGGAGCTaGACAGTAGAGATCCCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: VVWLSEIPLSNCTRRVVFPSLWS*TVEIPK Trigger: TTTTGGGATCTCTACTGTGCAGCTCCAGAGAGACGG...GAAAACTACTCGTCGTGTACAGTTAGACAAAGGAATCTCAGACAACCAGACCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR GCA 90 bp | CACACATACACACAGATAATCATCGCAGTTCAGTTGGGGGCAATGCTAATGTGCGGGGGAGTCATTCTCTaGATTGGTCCACCCATATTT | + |
|
Preference number: 4 (lower is better) Translates to: HTYTQIIIAVQLGAMLMCGGVIL*IGPPIF Trigger: AAATATGGGTGGACCAATGCAGAGAATGACTCCCCC...GCACATTAGCATTGCCCCCAACTGAACTGCGATGATTATCTGTGTGTATGTGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR CCA 90 bp | GAGATTCCTTTGTCTAACTGTACACGACGAGTAGTTTTCTTCTGTAGTAGTTCTAGGCTGAAAGAACCCTaGTGGCACGGGACCTACTGG | + |
|
Preference number: 4 (lower is better) Translates to: EIPLSNCTRRVVFFCSSSRLKEP*WHGTYW Trigger: CCAGTAGGTCCCGTGCCACCAGGGTTCTTTCAGCCT...AGAACTACTACAGAAGAAAACTACTCGTCGTGTACAGTTAGACAAAGGAATCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| CDS-3UTR CCA 90 bp | TACAGTTGCTTGAATCACATTTGGACCCGCTTTCTTCTCAAAATAGGGGAGAGAAGGTCTACCACCACCTaGACCCATGTTCATTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: YSCLNHIWTRFLLKIGERRSTTT*THVHSR Trigger: CCTGGAATGAACATGGGTCCAGGTGGTGGTAGACCT...TCTCTCCCCTATTTTGAGAAGAAAGCGGGTCCAAATGTGATTCAAGCAACTGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR CCA 90 bp | AATAACTTATATAAAGCAGTGATGTACACAGCACAAAATAGTTGGGGAAGGGCACATGATGGGTGTTCCTaGTGGTCCTCCACCTCCCGG | + |
|
Preference number: 4 (lower is better) Translates to: NNLYKAVMYTAQNSWGRAHDGCS*WSSTSR Trigger: CCGGGAGGTGGAGGACCACCAGGAACACCCATCATG...TGCCCTTCCCCAACTATTTTGTGCTGTGTACATCACTGCTTTATATAAGTTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR GCA 90 bp | GTGGTCTGGTTGTCTGAGATTCCTTTGTCTAACTGTACACGACGAGTAGTTTTCGGGGGAGTCATTCTCTaGATTGGTCCACCCATATTT | + |
|
Preference number: 4 (lower is better) Translates to: VVWLSEIPLSNCTRRVVFGGVIL*IGPPIF Trigger: AAATATGGGTGGACCAATGCAGAGAATGACTCCCCC...GAAAACTACTCGTCGTGTACAGTTAGACAAAGGAATCTCAGACAACCAGACCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR CCA 90 bp | TACAGTTGCTTGAATCACATTTGGACCCGCTTTCTTCTCAAAATAGGGGAGAGAACACCTCCAAGTGCCTaGTTAGGTATCCTCAATGGG | + |
|
Preference number: 4 (lower is better) Translates to: YSCLNHIWTRFLLKIGERTPPSA*LGILNG Trigger: CCCATTGAGGATACCTAACCAGGCACTTGGAGGTGT...TCTCTCCCCTATTTTGAGAAGAAAGCGGGTCCAAATGTGATTCAAGCAACTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR CCA 90 bp | AGTCAGGTGGTTAAGAACCATTCAGGACTTAAGACTGACACGAACTTTCAAACGTCCTTGTTGTCGTGTTaGATCCATTCCACTGGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: SQVVKNHSGLKTDTNFQTSLLSC*IHSTGE Trigger: CTCCCCAGTGGAATGGATCCAACACGACAACAAGGA...CGTTTGAAAGTTCGTGTCAGTCTTAAGTCCTGAATGGTTCTTAACCACCTGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| CDS-3UTR CCA 90 bp | TACAGTTGCTTGAATCACATTTGGACCCGCTTTCTTCTCAAAATAGGGGAGAGACTTGGAGTGCCCGGCTaGTTACTCAGGCTCATATTA | + |
|
Preference number: 4 (lower is better) Translates to: YSCLNHIWTRFLLKIGERLGVPG*LLRLIL Trigger: TAATATGAGCCTGAGTAACCAGCCGGGCACTCCAAG...TCTCTCCCCTATTTTGAGAAGAAAGCGGGTCCAAATGTGATTCAAGCAACTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR CAA 72 bp | AGAAGTGTACTGTATGAAGCCCTGGCTGAGCTACTGTaGAGGGGTTTCCTTATATACAAAGCACCACACTAC | + |
|
Preference number: 4 (lower is better) Translates to: RSVLYEALAELL*RGFLIYKAPHY Trigger: GTAGTGTGGTGCTTTGTATATAAGGAAACCCCTCAACAGTAGCTCAGCCAGGGCTTCATACAGTACACTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR CAA 72 bp | CTGAAGTGGAAACTTAAGGGTTCTTTAGAAAGTCATTaGGTGGCACACGCCTTTAATCCCATCGCTTGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: LKWKLKGSLESH*VAHAFNPIAWE Trigger: CTCCCAAGCGATGGGATTAAAGGCGTGTGCCACCAAATGACTTTCTAAAGAACCCTTAAGTTTCCACTTCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138488.2 |
||
| CDS-3UTR GCA 90 bp | GAGATTCCTTTGTCTAACTGTACACGACGAGTAGTTTTCTTCTGTAGTAGTTCTCAGTGGGGGTCTCATTaGACCTCCATAGTTCTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: EIPLSNCTRRVVFFCSSSQWGSH*TSIVLW Trigger: CCACAGAACTATGGAGGTGCAATGAGACCCCCACTG...AGAACTACTACAGAAGAAAACTACTCGTCGTGTACAGTTAGACAAAGGAATCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR CCA 90 bp | TGTACACAGCACAAAATAGTTGGGGAAGGGCAGGAGCAACCTTTAATAATTAAAGGTTTCCCGTCTCTCTaGAGCTGCACAGTAGAGATC | + |
|
Preference number: 4 (lower is better) Translates to: CTQHKIVGEGQEQPLIIKGFPSL*SCTVEI Trigger: GATCTCTACTGTGCAGCTCCAGAGAGACGGGAAACC...TTTAATTATTAAAGGTTGCTCCTGCCCTTCCCCAACTATTTTGTGCTGTGTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| 3UTR CAA 72 bp | GAAAGGATGAATCAATGTGGATCTGAGAGAAATCAATaGTCCAGAACCAACAGCAGGCAAACAGTGTCAACG | + |
|
Preference number: 4 (lower is better) Translates to: ERMNQCGSERNQ*SRTNSRQTVST Trigger: CGTTGACACTGTTTGCCTGCTGTTGGTTCTGGACAATTGATTTCTCTCAGATCCACATTGATTCATCCTTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| CDS-3UTR CCA 90 bp | GTAGAAATGATCATAGGAAATCTGAATAAACATACAACACCATTTCTCGCTGTGAGGTCTACCACCACCTaGACCCATGTTCATTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: VEMIIGNLNKHTTPFLAVRSTTT*THVHSR Trigger: CCTGGAATGAACATGGGTCCAGGTGGTGGTAGACCT...CACAGCGAGAAATGGTGTTGTATGTTTATTCAGATTTCCTATGATCATTTCTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR CAA 72 bp | TTCCCTGGGAGACGCTGTAAGTTCAAACAAGTGGTTTaGTTATCACTTTTGGATTTTATCGTGTTTAAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: FPGRRCKFKQVV*LSLLDFIVFKR Trigger: TCTCTTAAACACGATAAAATCCAAAAGTGATAACAAAACCACTTGTTTGAACTTACAGCGTCTCCCAGGGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| 3UTR CAA 72 bp | CAGTGGTTGTTTGTATCTCAGTTAGAACAGCAAGGGTaGCAGAGCTGTCTTTTCAATTATAAAATAAACTCT | + |
|
Preference number: 4 (lower is better) Translates to: QWLFVSQLEQQG*QSCLFNYKINS Trigger: AGAGTTTATTTTATAATTGAAAAGACAGCTCTGCAACCCTTGCTGTTCTAACTGAGATACAAACAACCACTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| CDS-3UTR CAA 90 bp | TTCTCTTCCCACACATACACACAGATAATCATCGCAGTTCAGTTGGGGGCAATGGTCCTTGTTGTCGTGTaGGATCCATTCCACTGGGGA | + |
|
Preference number: 5 (lower is better) Translates to: FSSHTYTQIIIAVQLGAMVLVVV*DPFHWG Trigger: TCCCCAGTGGAATGGATCCAACACGACAACAAGGAC...CATTGCCCCCAACTGAACTGCGATGATTATCTGTGTGTATGTGTGGGAAGAGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR CAA 90 bp | CCCTGGAATGCCCAGCTAACATTTTCCATTTTCAGAAAGGATGAATCAATGTGGGTCCTTGTTGTCGTGTaGGATCCATTCCACTGGGGA | + |
|
Preference number: 5 (lower is better) Translates to: PWNAQLTFSIFRKDESMWVLVVV*DPFHWG Trigger: TCCCCAGTGGAATGGATCCAACACGACAACAAGGAC...CCACATTGATTCATCCTTTCTGAAAATGGAAAATGTTAGCTGGGCATTCCAGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004094.15 |
||
| CDS-3UTR CAA 90 bp | GAGATTCCTTTGTCTAACTGTACACGACGAGTAGTTTTCTTCTGTAGTAGTTCTTTTCACCGTCATCCCTaGGAGTGCCCGGCTGGTTAC | + |
|
Preference number: 5 (lower is better) Translates to: EIPLSNCTRRVVFFCSSSFHRHP*ECPAGY Trigger: GTAACCAGCCGGGCACTCCAAGGGATGACGGTGAAA...AGAACTACTACAGAAGAAAACTACTCGTCGTGTACAGTTAGACAAAGGAATCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR CAA 90 bp | TGTACACAGCACAAAATAGTTGGGGAAGGGCAGGAGCAACCTTTAATAATTAAATTTCACCGTCATCCCTaGGAGTGCCCGGCTGGTTAC | + |
|
Preference number: 5 (lower is better) Translates to: CTQHKIVGEGQEQPLIIKFHRHP*ECPAGY Trigger: GTAACCAGCCGGGCACTCCAAGGGATGACGGTGAAA...TTTAATTATTAAAGGTTGCTCCTGCCCTTCCCCAACTATTTTGTGCTGTGTACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR CAA 90 bp | AAAGCAGTGATGTACACAGCACAAAATAGTTGGGGAAGGGCAGGAGCAACCTTTGAGTCATTCTCTGCATaGGTCCACCCATATTTGGAT | + |
|
Preference number: 5 (lower is better) Translates to: KAVMYTAQNSWGRAGATFESFSA*VHPYLD Trigger: ATCCAAATATGGGTGGACCAATGCAGAGAATGACTC...AAAGGTTGCTCCTGCCCTTCCCCAACTATTTTGTGCTGTGTACATCACTGCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR CAA 90 bp | TTGAATCACATTTGGACCCGCTTTCTTCTCAAAATAGGGGAGAGAGCAGGAACTATTTGGATGTCCTTGTaGTCGTGTTGGATCCATTCC | + |
|
Preference number: 5 (lower is better) Translates to: LNHIWTRFLLKIGERAGTIWMSL*SCWIHS Trigger: GGAATGGATCCAACACGACAACAAGGACATCCAAAT...AGTTCCTGCTCTCTCCCCTATTTTGAGAAGAAAGCGGGTCCAAATGTGATTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR CAA 90 bp | GAGATTCCTTTGTCTAACTGTACACGACGAGTAGTTTTCTTCTGTAGTAGTTCTGAGTCATTCTCTGCATaGGTCCACCCATATTTGGAT | + |
|
Preference number: 5 (lower is better) Translates to: EIPLSNCTRRVVFFCSSSESFSA*VHPYLD Trigger: ATCCAAATATGGGTGGACCAATGCAGAGAATGACTC...AGAACTACTACAGAAGAAAACTACTCGTCGTGTACAGTTAGACAAAGGAATCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR CAA 90 bp | GAGATTCCTTTGTCTAACTGTACACGACGAGTAGTTTTCTTCTGTAGTAGTTCTCTGAGGAGTAGGGTATaGAATTCGCATTTGTTGGGT | + |
|
Preference number: 5 (lower is better) Translates to: EIPLSNCTRRVVFFCSSSLRSRV*NSHLLG Trigger: ACCCAACAAATGCGAATTCAATACCCTACTCCTCAG...AGAACTACTACAGAAGAAAACTACTCGTCGTGTACAGTTAGACAAAGGAATCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS-3UTR CAA 90 bp | AATAACTTATATAAAGCAGTGATGTACACAGCACAAAATAGTTGGGGAAGGGCACTGAGGAGTAGGGTATaGAATTCGCATTTGTTGGGT | + |
|
Preference number: 5 (lower is better) Translates to: NNLYKAVMYTAQNSWGRALRSRV*NSHLLG Trigger: ACCCAACAAATGCGAATTCAATACCCTACTCCTCAG...TGCCCTTCCCCAACTATTTTGTGCTGTGTACATCACTGCTTTATATAAGTTATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000042122.15 |
||
| CDS GCA 72 bp | GCTGAAAGAACCCTGGTGGCACGGGACCTACTGGCATaGCATCTCCTGGGGGCATGTTTCCTAGCACGGGGC | + |
|
Preference number: 6 (lower is better) Translates to: AERTLVARDLLA*HLLGACFLARG Trigger: GCCCCGTGCTAGGAAACATGCCCCCAGGAGATGGCATGCCAGTAGGTCCCGTGCCACCAGGGTTCTTTCAGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004094.15 ENSMUST00000231481.2 |
||