Pregenerated sensors for SSBP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029911Ensembl transcript IDs: ENSMUST00000031971.13, ENSMUST00000114779.9
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTTTAGCTCCTGGAGACAATCCTGCAGACGCACTGCTCTACTTCTaGAGCCTACACTCAGGAGTGGCTTTGGCTTCCAGTTGGTTCCTG | + |
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Preference number: 1 (lower is better) Translates to: SLAPGDNPADALLYF*SLHSGVALASSWFL Trigger: CAGGAACCAACTGGAAGCCAAAGCCACTCCTGAGTGTAGGCTGCAGAAGTAGAGCAGTGCGTCTGCAGGATTGTCTCCAGGAGCTAAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR CCA 90 bp | ATCCAGTCTGAGAATTGTAGTGGAAGTGATCAGTGGTTTTCACACTaGCCCATCTTTGAAATGCAGCCTTCAGAGCCATGCACACACTAT | + |
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Preference number: 1 (lower is better) Translates to: IQSENCSGSDQWFSH*PIFEMQPSEPCTHY Trigger: ATAGTGTGTGCATGGCTCTGAAGGCTGCATTTCAAAGATGGGCCAGTGTGAAAACCACTGATCACTTCCACTACAATTCTCAGACTGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR CCA 90 bp | CTGGGTGGCTGGAGCTACATCTGGCCAGTGGAATATAAGTGTCAATaGAAGAAAGCTAAAAGTTCACATACCTGCATTCAAAGTCCCACT | + |
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Preference number: 1 (lower is better) Translates to: LGGWSYIWPVEYKCQ*KKAKSSHTCIQSPT Trigger: AGTGGGACTTTGAATGCAGGTATGTGAACTTTTAGCTTTCTTCCATTGACACTTATATTCCACTGGCCAGATGTAGCTCCAGCCACCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR TCA 90 bp | CTTGGTTGGTCAACAGTGGAACCAGGAGACACAGTGAAGTTACTTTaGTTGTCAGAAGCCAGTAGAGGAACTATGACTTGTTTTCCTACA | + |
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Preference number: 1 (lower is better) Translates to: LGWSTVEPGDTVKLL*LSEASRGTMTCFPT Trigger: TGTAGGAAAACAAGTCATAGTTCCTCTACTGGCTTCTGACAATCAAAGTAACTTCACTGTGTCTCCTGGTTCCACTGTTGACCAACCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR CCA 90 bp | GTGAGTGAAGACACAGTACACAAGTATAAGATGCTAAAGTGCATATaGCCAGGGGTATGTACAGAAGGAAAGCTTTCTTCATCACTCCAG | + |
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Preference number: 1 (lower is better) Translates to: VSEDTVHKYKMLKCI*PGVCTEGKLSSSLQ Trigger: CTGGAGTGATGAAGAAAGCTTTCCTTCTGTACATACCCCTGGCCATATGCACTTTAGCATCTTATACTTGTGTACTGTGTCTTCACTCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR CCA 90 bp | TATATGGGGCATTCCAGTTTAACACTGGGTGGCTGGAGCTACATCTaGCCAGTGGAATATAAGTGTCAATGGAAGAAAGCTAAAAGTTCA | + |
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Preference number: 1 (lower is better) Translates to: YMGHSSLTLGGWSYI*PVEYKCQWKKAKSS Trigger: TGAACTTTTAGCTTTCTTCCATTGACACTTATATTCCACTGGCCAGATGTAGCTCCAGCCACCCAGTGTTAAACTGGAATGCCCCATATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR TCA 90 bp | TACACTCAGGAGTGGCTTTGGCTTCCAGTTGGTTCCTGTACAGGATaGGATTTTTCCACCTCCACCTTGTTTAAATTTCACTCAGTTATA | + |
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Preference number: 1 (lower is better) Translates to: YTQEWLWLPVGSCTG*DFSTSTLFKFHSVI Trigger: TATAACTGAGTGAAATTTAAACAAGGTGGAGGTGGAAAAATCTCATCCTGTACAGGAACCAACTGGAAGCCAAAGCCACTCCTGAGTGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR GCA 90 bp | GAACACCAAACAGAGTCACTACTTACCTACAGGTGTACAGAGATATaGAAAAACATCAGTGTTTACAACGATGACAGACAGACTCTTGAC | + |
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Preference number: 1 (lower is better) Translates to: EHQTESLLTYRCTEI*KNISVYNDDRQTLD Trigger: GTCAAGAGTCTGTCTGTCATCGTTGTAAACACTGATGTTTTTGCATATCTCTGTACACCTGTAGGTAAGTAGTGACTCTGTTTGGTGTTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR GCA 90 bp | GAAGTGGCTTATATTCAGCTGGTAAGGAGACCTGAGTTGCTTGACTaGATAGCCTTACCTTTGACTTTACTACTAGAGATTATTACCCTT | + |
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Preference number: 1 (lower is better) Translates to: EVAYIQLVRRPELLD*IALPLTLLLEIITL Trigger: AAGGGTAATAATCTCTAGTAGTAAAGTCAAAGGTAAGGCTATGCAGTCAAGCAACTCAGGTCTCCTTACCAGCTGAATATAAGCCACTTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR TCA 90 bp | TTTAAATTTCAAATGAAGGCTGTTGCACCTTCACTTTCAAAGTTTTaGATACATCACAAATTCCTACCATCACAGTTCTGCAACTGCCCG | + |
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Preference number: 1 (lower is better) Translates to: FKFQMKAVAPSLSKF*IHHKFLPSQFCNCP Trigger: CGGGCAGTTGCAGAACTGTGATGGTAGGAATTTGTGATGTATTCAAAACTTTGAAAGTGAAGGTGCAACAGCCTTCATTTGAAATTTAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031971.13 |
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| 3UTR CAA 90 bp | GCAGACGCACTGCTCTACTTCTGCAGCCTACACTCAGGAGTGGCTTaGGCTTCCAGTTGGTTCCTGTACAGGATGAGATTTTTCCACCTC | + |
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Preference number: 2 (lower is better) Translates to: ADALLYFCSLHSGVA*ASSWFLYRMRFFHL Trigger: GAGGTGGAAAAATCTCATCCTGTACAGGAACCAACTGGAAGCCAAAGCCACTCCTGAGTGTAGGCTGCAGAAGTAGAGCAGTGCGTCTGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR TCA 90 bp | AGGAATCACTTTAGAAAGCAAGAGTCCATAACACTGAGCAGGGATCCGGAACTTATCAAACACATAGGCTaGGCTGGGGAGCAGGGGCCG | + |
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Preference number: 2 (lower is better) Translates to: RNHFRKQESITLSRDPELIKHIG*AGEQGP Trigger: CGGCCCCTGCTCCCCAGCTCAGCCTATGTGTTTGAT...AAGTTCCGGATCCCTGCTCAGTGTTATGGACTCTTGCTTTCTAAAGTGATTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR TCA 90 bp | ATCCAGTCTGAGAATTGTAGTGGAAGTGATCAGTGGTTTTCACACTGGCCCATCACCACAGGGCAAGTGTaGAGCAGAAAGGGCTTTCCA | + |
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Preference number: 2 (lower is better) Translates to: IQSENCSGSDQWFSHWPITTGQV*SRKGFP Trigger: TGGAAAGCCCTTTCTGCTTCACACTTGCCCTGTGGT...GATGGGCCAGTGTGAAAACCACTGATCACTTCCACTACAATTCTCAGACTGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR GCA 90 bp | ATCCAGTCTGAGAATTGTAGTGGAAGTGATCAGTGGTTTTCACACTGGCCCATCGGCTTTCCAGATGTATaGCTTGGCCCTGGCACACAT | + |
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Preference number: 2 (lower is better) Translates to: IQSENCSGSDQWFSHWPIGFPDV*LGPGTH Trigger: ATGTGTGCCAGGGCCAAGGCATACATCTGGAAAGCC...GATGGGCCAGTGTGAAAACCACTGATCACTTCCACTACAATTCTCAGACTGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR CCA 90 bp | ATCCAGTCTGAGAATTGTAGTGGAAGTGATCAGTGGTTTTCACACTGGCCCATCGCCTACACTCAGGAGTaGCTTTGGCTTCCAGTTGGT | + |
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Preference number: 2 (lower is better) Translates to: IQSENCSGSDQWFSHWPIAYTQE*LWLPVG Trigger: ACCAACTGGAAGCCAAAGCCACTCCTGAGTGTAGGC...GATGGGCCAGTGTGAAAACCACTGATCACTTCCACTACAATTCTCAGACTGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR TCA 90 bp | ATCCAGTCTGAGAATTGTAGTGGAAGTGATCAGTGGTTTTCACACTGGCCCATCGTGGAAAGAAGGCCTTaGCACCAGGACAAGAACTAT | + |
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Preference number: 2 (lower is better) Translates to: IQSENCSGSDQWFSHWPIVERRP*HQDKNY Trigger: ATAGTTCTTGTCCTGGTGTCAAGGCCTTCTTTCCAC...GATGGGCCAGTGTGAAAACCACTGATCACTTCCACTACAATTCTCAGACTGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR TCA 90 bp | GTTGTTATACACTCTTATAGCAAAATAAATCCCTGTGGTCTAAAACACAGCAGCAAGAGTCAGCCTGAGTaGAGTGCTGCTGCCTCCGCC | + |
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Preference number: 2 (lower is better) Translates to: VVIHSYSKINPCGLKHSSKSQPE*SAAASA Trigger: GGCGGAGGCAGCAGCACTTCACTCAGGCTGACTCTT...GCTGCTGTGTTTTAGACCACAGGGATTTATTTTGCTATAAGAGTGTATAACAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR GCA 90 bp | GGCAGGCAGTCTTTAGCTCCTGGAGACAATCCTGCAGACGCACTGCTCTACTTCCAAGCAATTGATAAGTaGCAAAATGACAGGCTTAAT | + |
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Preference number: 2 (lower is better) Translates to: GRQSLAPGDNPADALLYFQAIDK*QNDRLN Trigger: ATTAAGCCTGTCATTTTGGCACTTATCAATTGCTTG...GAAGTAGAGCAGTGCGTCTGCAGGATTGTCTCCAGGAGCTAAAGACTGCCTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR GCA 90 bp | GGCAGGCAGTCTTTAGCTCCTGGAGACAATCCTGCAGACGCACTGCTCTACTTCAGGTGTACAGAGATATaGAAAAACATCAGTGTTTAC | + |
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Preference number: 2 (lower is better) Translates to: GRQSLAPGDNPADALLYFRCTEI*KNISVY Trigger: GTAAACACTGATGTTTTTGCATATCTCTGTACACCT...GAAGTAGAGCAGTGCGTCTGCAGGATTGTCTCCAGGAGCTAAAGACTGCCTGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR TCA 90 bp | TACAGAAGGAAAGCTTTCTTCATCACTCCAGTGTATGAAGTAGCACTGGCTGCATGGAAAGCTGCAGGCTaGCTATGGATGGCTTATACA | + |
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Preference number: 2 (lower is better) Translates to: YRRKAFFITPVYEVALAAWKAAG*LWMAYT Trigger: TGTATAAGCCATCCATAGTCAGCCTGCAGCTTTCCA...TGCAGCCAGTGCTACTTCATACACTGGAGTGATGAAGAAAGCTTTCCTTCTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR TCA 90 bp | GTTGTTATACACTCTTATAGCAAAATAAATCCCTGTGGTCTAAAACACAGCAGCAGGCTCCAGCAGATCTaGCTGGCTTGGAATCGGCTG | + |
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Preference number: 2 (lower is better) Translates to: VVIHSYSKINPCGLKHSSRLQQI*LAWNRL Trigger: CAGCCGATTCCAAGCCAGTCAGATCTGCTGGAGCCT...GCTGCTGTGTTTTAGACCACAGGGATTTATTTTGCTATAAGAGTGTATAACAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR CAA 90 bp | GAGCTTGAAAACTTCCTGAGCAGTCCTGACAATTTCAGTGCTTGGTaGGTCAACAGTGGAACCAGGAGACACAGTGAAGTTACTTTGATT | + |
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Preference number: 2 (lower is better) Translates to: ELENFLSSPDNFSAW*VNSGTRRHSEVTLI Trigger: AATCAAAGTAACTTCACTGTGTCTCCTGGTTCCACTGTTGACCAACCAAGCACTGAAATTGTCAGGACTGCTCAGGAAGTTTTCAAGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR TCA 90 bp | AGGAATCACTTTAGAAAGCAAGAGTCCATAACACTGAGCAGGGATCCGGAACTTACGGAACAGACAGAATaGGGAATTTCAAACACTAAA | + |
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Preference number: 2 (lower is better) Translates to: RNHFRKQESITLSRDPELTEQTE*GISNTK Trigger: TTTAGTGTTTGAAATTCCTCATTCTGTCTGTTCCGT...AAGTTCCGGATCCCTGCTCAGTGTTATGGACTCTTGCTTTCTAAAGTGATTCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR CCA 90 bp | GTTGTTATACACTCTTATAGCAAAATAAATCCCTGTGGTCTAAAACACAGCAGCAGTGGAAGTGATCAGTaGTTTTCACACTGGCCCATC | + |
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Preference number: 2 (lower is better) Translates to: VVIHSYSKINPCGLKHSSSGSDQ*FSHWPI Trigger: GATGGGCCAGTGTGAAAACCACTGATCACTTCCACT...GCTGCTGTGTTTTAGACCACAGGGATTTATTTTGCTATAAGAGTGTATAACAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR GCA 90 bp | AACAAGACACTAAGTAGAGAAAGTAGATATAGCCTGAAGGGTGATATAGTTGTTAAACTTCTGGAAAGCTaGAGGCTGACTATGGATGGC | + |
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Preference number: 2 (lower is better) Translates to: NKTLSRESRYSLKGDIVVKLLES*RLTMDG Trigger: GCCATCCATAGTCAGCCTGCAGCTTTCCAGAAGTTT...AACAACTATATCACCCTTCAGGCTATATCTACTTTCTCTACTTAGTGTCTTGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR GCA 90 bp | GTTGTTATACACTCTTATAGCAAAATAAATCCCTGTGGTCTAAAACACAGCAGCAGAGCACTGCTCCTTTaGTATATTTGTCTTGCTGCT | + |
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Preference number: 2 (lower is better) Translates to: VVIHSYSKINPCGLKHSSRALLL*YICLAA Trigger: AGCAGCAAGACAAATATAGCAAAGGAGCAGTGCTCT...GCTGCTGTGTTTTAGACCACAGGGATTTATTTTGCTATAAGAGTGTATAACAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR GCA 90 bp | TATAGCAAAATAAATCCCTGTGGTCTAAAACACAGCAGCAAGCAAATAACTGAAAACCCGAGAGAGCACTaGTCCTTTGCTATATTTGTC | + |
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Preference number: 2 (lower is better) Translates to: YSKINPCGLKHSSKQITENPREH*SFAIFV Trigger: GACAAATATAGCAAAGGAGCAGTGCTCTCTCGGGTT...TTCAGTTATTTGCTTGCTGCTGTGTTTTAGACCACAGGGATTTATTTTGCTATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR CCA 90 bp | TATAGCAAAATAAATCCCTGTGGTCTAAAACACAGCAGCAAGCAAATAACTGAAGACAATTTCAGTGCTTaGTTGGTCAACAGTGGAACC | + |
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Preference number: 2 (lower is better) Translates to: YSKINPCGLKHSSKQITEDNFSA*LVNSGT Trigger: GGTTCCACTGTTGACCAACCAAGCACTGAAATTGTC...TTCAGTTATTTGCTTGCTGCTGTGTTTTAGACCACAGGGATTTATTTTGCTATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR TCA 90 bp | AACAAGACACTAAGTAGAGAAAGTAGATATAGCCTGAAGGGTGATATAGTTGTTAATAACCAATCTCCCTaGACAGCCTCAGAAACAATG | + |
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Preference number: 2 (lower is better) Translates to: NKTLSRESRYSLKGDIVVNNQSP*TASETM Trigger: CATTGTTTCTGAGGCTGTTCAGGGAGATTGGTTATT...AACAACTATATCACCCTTCAGGCTATATCTACTTTCTCTACTTAGTGTCTTGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR GCA 90 bp | AACAAGACACTAAGTAGAGAAAGTAGATATAGCCTGAAGGGTGATATAGTTGTTAAATCTCAACGAACTTaGAGGGCATTTTTAAGCCCC | + |
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Preference number: 2 (lower is better) Translates to: NKTLSRESRYSLKGDIVVKSQRT*RAFLSP Trigger: GGGGCTTAAAAATGCCCTGCAAGTTCGTTGAGATTT...AACAACTATATCACCCTTCAGGCTATATCTACTTTCTCTACTTAGTGTCTTGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR TCA 72 bp | TCGGCTGACATCACAAGGAAGGCAGAAGAGTCAGCCTaGGTGAAGTGCTGCTGCCTCCGCCTCTCAGCCTTT | + |
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Preference number: 3 (lower is better) Translates to: SADITRKAEESA*VKCCCLRLSAF Trigger: AAAGGCTGAGAGGCGGAGGCAGCAGCACTTCACTCAGGCTGACTCTTCTGCCTTCCTTGTGATGTCAGCCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR GCA 72 bp | GGAGGGCAGGCAGTCTTTAGCTCCTGGAGACAATCCTaGAGACGCACTGCTCTACTTCTGCAGCCTACACTC | + |
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Preference number: 3 (lower is better) Translates to: GGQAVFSSWRQS*RRTALLLQPTL Trigger: GAGTGTAGGCTGCAGAAGTAGAGCAGTGCGTCTGCAGGATTGTCTCCAGGAGCTAAAGACTGCCTGCCCTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR TCA 72 bp | GGAGCAGTGAGGTTTCTCAGCAGATGGGGCTGCATGTaGTTAGGCTCCAGCAGATCTGACTGGCTTGGAATC | + |
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Preference number: 3 (lower is better) Translates to: GAVRFLSRWGCM*LGSSRSDWLGI Trigger: GATTCCAAGCCAGTCAGATCTGCTGGAGCCTAATCACATGCAGCCCCATCTGCTGAGAAACCTCACTGCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR CCA 72 bp | ATTAGCACACAGGAAAAGGAACAGGACGAAGTCCCCTaGGGAGTTTCCTGCAGAGCTGCCATCAGGGTGCTT | + |
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Preference number: 3 (lower is better) Translates to: ISTQEKEQDEVP*GVSCRAAIRVL Trigger: AAGCACCCTGATGGCAGCTCTGCAGGAAACTCCCCAGGGGACTTCGTCCTGTTCCTTTTCCTGTGTGCTAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031971.13 |
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| 3UTR CCA 72 bp | TTTCTGAGTCACGGAGGGCAGGCAGTCTTTAGCTCCTaGAGACAATCCTGCAGACGCACTGCTCTACTTCTG | + |
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Preference number: 3 (lower is better) Translates to: FLSHGGQAVFSS*RQSCRRTALLL Trigger: CAGAAGTAGAGCAGTGCGTCTGCAGGATTGTCTCCAGGAGCTAAAGACTGCCTGCCCTCCGTGACTCAGAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR TCA 72 bp | TTAGGCTCCAGCAGATCTGACTGGCTTGGAATCGGCTaGCATCACAAGGAAGGCAGAAGAGTCAGCCTGAGT | + |
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Preference number: 3 (lower is better) Translates to: LGSSRSDWLGIG*HHKEGRRVSLS Trigger: ACTCAGGCTGACTCTTCTGCCTTCCTTGTGATGTCAGCCGATTCCAAGCCAGTCAGATCTGCTGGAGCCTAA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR GCA 72 bp | TGTCTTAGTGCTGTTAGCTTCTACAGGTCTACTCAGTaGCGGGTGAAGCTGGGAGCAGTGAGGTTTCTCAGC | + |
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Preference number: 3 (lower is better) Translates to: CLSAVSFYRSTQ*RVKLGAVRFLS Trigger: GCTGAGAAACCTCACTGCTCCCAGCTTCACCCGGCACTGAGTAGACCTGTAGAAGCTAACAGCACTAAGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR TCA 72 bp | CTCTCTAGGGAGGCAAAGTCGAAGGTAAAAGATCTTTaGAGTAGGTACAGCTCAACGGGAGACGGCCTGCCT | + |
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Preference number: 3 (lower is better) Translates to: LSREAKSKVKDL*SRYSSTGDGLP Trigger: AGGCAGGCCGTCTCCCGTTGAGCTGTACCTACTTCAAAGATCTTTTACCTTCGACTTTGCCTCCCTAGAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR TCA 72 bp | ATCACTCCAGTGTATGAAGTAGCACTGGCTGCAGGATaGGCAGGAGCAATGCTCTGTGACTTAGAAAAGAGC | + |
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Preference number: 3 (lower is better) Translates to: ITPVYEVALAAG*AGAMLCDLEKS Trigger: GCTCTTTTCTAAGTCACAGAGCATTGCTCCTGCTCATCCTGCAGCCAGTGCTACTTCATACACTGGAGTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR GCA 72 bp | GTGATCAGTGGTTTTCACACTGGCCCATCTTTGAAATaGAGCCTTCAGAGCCATGCACACACTATTAACGGG | + |
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Preference number: 3 (lower is better) Translates to: VISGFHTGPSLK*SLQSHAHTING Trigger: CCCGTTAATAGTGTGTGCATGGCTCTGAAGGCTGCATTTCAAAGATGGGCCAGTGTGAAAACCACTGATCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR TCA 72 bp | GTACAGAAGGAAAGCTTTCTTCATCACTCCAGTGTATaGAGTAGCACTGGCTGCAGGATGAGCAGGAGCAAT | + |
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Preference number: 3 (lower is better) Translates to: VQKESFLHHSSV*SSTGCRMSRSN Trigger: ATTGCTCCTGCTCATCCTGCAGCCAGTGCTACTTCATACACTGGAGTGATGAAGAAAGCTTTCCTTCTGTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR CCA 72 bp | GAGAATTGTAGTGGAAGTGATCAGTGGTTTTCACACTaGCCCATCTTTGAAATGCAGCCTTCAGAGCCATGC | + |
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Preference number: 3 (lower is better) Translates to: ENCSGSDQWFSH*PIFEMQPSEPC Trigger: GCATGGCTCTGAAGGCTGCATTTCAAAGATGGGCCAGTGTGAAAACCACTGATCACTTCCACTACAATTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR CCA 72 bp | GAAAACTTCCTGAGCAGTCCTGACAATTTCAGTGCTTaGTTGGTCAACAGTGGAACCAGGAGACACAGTGAA | + |
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Preference number: 3 (lower is better) Translates to: ENFLSSPDNFSA*LVNSGTRRHSE Trigger: TTCACTGTGTCTCCTGGTTCCACTGTTGACCAACCAAGCACTGAAATTGTCAGGACTGCTCAGGAAGTTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR GCA 72 bp | CACCAAGATTCAATTCTCCAAGTTAACAGTATGTACTaGAGGGGCAAGTTGCTTTCATACCCCACAGAGTCC | + |
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Preference number: 3 (lower is better) Translates to: HQDSILQVNSMY*RGKLLSYPTES Trigger: GGACTCTGTGGGGTATGAAAGCAACTTGCCCCTGCAGTACATACTGTTAACTTGGAGAATTGAATCTTGGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031971.13 |
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| 3UTR CCA 72 bp | CATTCCAGTTTAACACTGGGTGGCTGGAGCTACATCTaGCCAGTGGAATATAAGTGTCAATGGAAGAAAGCT | + |
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Preference number: 3 (lower is better) Translates to: HSSLTLGGWSYI*PVEYKCQWKKA Trigger: AGCTTTCTTCCATTGACACTTATATTCCACTGGCCAGATGTAGCTCCAGCCACCCAGTGTTAAACTGGAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR TCA 72 bp | GAGTGGCTTTGGCTTCCAGTTGGTTCCTGTACAGGATaGGATTTTTCCACCTCCACCTTGTTTAAATTTCAC | + |
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Preference number: 3 (lower is better) Translates to: EWLWLPVGSCTG*DFSTSTLFKFH Trigger: GTGAAATTTAAACAAGGTGGAGGTGGAAAAATCTCATCCTGTACAGGAACCAACTGGAAGCCAAAGCCACTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR TCA 72 bp | CCGACTCTCATTTCCATGTCAATATTTCCATGCCAATaGATGAGCAGGACAGTACAATGTCACTGTGCTAGG | + |
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Preference number: 3 (lower is better) Translates to: PTLISMSIFPCQ*MSRTVQCHCAR Trigger: CCTAGCACAGTGACATTGTACTGTCCTGCTCATTCATTGGCATGGAAATATTGACATGGAAATGAGAGTCGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR CAA 90 bp | AACAAGACACTAAGTAGAGAAAGTAGATATAGCCTGAAGGGTGATATAGTTGTTCACTCAGGAGTGGCTTaGGCTTCCAGTTGGTTCCTG | + |
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Preference number: 3 (lower is better) Translates to: NKTLSRESRYSLKGDIVVHSGVA*ASSWFL Trigger: CAGGAACCAACTGGAAGCCAAAGCCACTCCTGAGTG...AACAACTATATCACCCTTCAGGCTATATCTACTTTCTCTACTTAGTGTCTTGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR CAA 90 bp | AACAAGACACTAAGTAGAGAAAGTAGATATAGCCTGAAGGGTGATATAGTTGTTCACACTGGCCCATCTTaGAAATGCAGCCTTCAGAGC | + |
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Preference number: 3 (lower is better) Translates to: NKTLSRESRYSLKGDIVVHTGPS*KCSLQS Trigger: GCTCTGAAGGCTGCATTTCAAAGATGGGCCAGTGTG...AACAACTATATCACCCTTCAGGCTATATCTACTTTCTCTACTTAGTGTCTTGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR TCA 72 bp | AGTTACTTTGATTGTCAGAAGCCAGTAGAGGAACTATaGCTTGTTTTCCTACAGGATCACCAACAGAGACCA | + |
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Preference number: 3 (lower is better) Translates to: SYFDCQKPVEEL*LVFLQDHQQRP Trigger: TGGTCTCTGTTGGTGATCCTGTAGGAAAACAAGTCATAGTTCCTCTACTGGCTTCTGACAATCAAAGTAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR GCA 72 bp | AGTGAAGACACAGTACACAAGTATAAGATGCTAAAGTaGATATGGCCAGGGGTATGTACAGAAGGAAAGCTT | + |
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Preference number: 3 (lower is better) Translates to: SEDTVHKYKMLK*IWPGVCTEGKL Trigger: AAGCTTTCCTTCTGTACATACCCCTGGCCATATGCACTTTAGCATCTTATACTTGTGTACTGTGTCTTCACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR CCA 72 bp | GACACAGTACACAAGTATAAGATGCTAAAGTGCATATaGCCAGGGGTATGTACAGAAGGAAAGCTTTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: DTVHKYKMLKCI*PGVCTEGKLSS Trigger: TGAAGAAAGCTTTCCTTCTGTACATACCCCTGGCCATATGCACTTTAGCATCTTATACTTGTGTACTGTGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR CAA 90 bp | AACAAGACACTAAGTAGAGAAAGTAGATATAGCCTGAAGGGTGATATAGTTGTTTGTGGAAAGAAGGCCTaGACACCAGGACAAGAACTA | + |
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Preference number: 3 (lower is better) Translates to: NKTLSRESRYSLKGDIVVCGKKA*TPGQEL Trigger: TAGTTCTTGTCCTGGTGTCAAGGCCTTCTTTCCACA...AACAACTATATCACCCTTCAGGCTATATCTACTTTCTCTACTTAGTGTCTTGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR GCA 72 bp | ATACATCACAAATTCCTACCATCACAGTTCTGCAACTaGCCGAGTATACACCAAGATTCAATTCTCCAAGTT | + |
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Preference number: 3 (lower is better) Translates to: IHHKFLPSQFCN*PSIHQDSILQV Trigger: AACTTGGAGAATTGAATCTTGGTGTATACTCGGGCAGTTGCAGAACTGTGATGGTAGGAATTTGTGATGTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031971.13 |
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| 3UTR GCA 72 bp | ACAGAGTCACTACTTACCTACAGGTGTACAGAGATATaGAAAAACATCAGTGTTTACAACGATGACAGACAG | + |
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Preference number: 3 (lower is better) Translates to: TESLLTYRCTEI*KNISVYNDDRQ Trigger: CTGTCTGTCATCGTTGTAAACACTGATGTTTTTGCATATCTCTGTACACCTGTAGGTAAGTAGTGACTCTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR CCA 72 bp | TGGAGCTACATCTGGCCAGTGGAATATAAGTGTCAATaGAAGAAAGCTAAAAGTTCACATACCTGCATTCAA | + |
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Preference number: 3 (lower is better) Translates to: WSYIWPVEYKCQ*KKAKSSHTCIQ Trigger: TTGAATGCAGGTATGTGAACTTTTAGCTTTCTTCCATTGACACTTATATTCCACTGGCCAGATGTAGCTCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR-3UTR CAA 90 bp | GTTGTTATACACTCTTATAGCAAAATAAATCCCTGTGGTCTAAAACACAGCAGCTGGCCACTGTCTCAGTaGTTTCCCTTTAACTTACTA | + |
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Preference number: 3 (lower is better) Translates to: VVIHSYSKINPCGLKHSSWPLSQ*FPFNLL Trigger: TAGTAAGTTAAAGGGAAACAACTGAGACAGTGGCCA...GCTGCTGTGTTTTAGACCACAGGGATTTATTTTGCTATAAGAGTGTATAACAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR TCA 72 bp | CAAATGAAGGCTGTTGCACCTTCACTTTCAAAGTTTTaGATACATCACAAATTCCTACCATCACAGTTCTGC | + |
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Preference number: 3 (lower is better) Translates to: QMKAVAPSLSKF*IHHKFLPSQFC Trigger: GCAGAACTGTGATGGTAGGAATTTGTGATGTATTCAAAACTTTGAAAGTGAAGGTGCAACAGCCTTCATTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031971.13 |
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| 3UTR TCA 72 bp | AGCTTATATAACTTGATGAGCAATAACCAATCTCCCTaGACAGCCTCAGAAACAATGTGTTTGGTGTTTGAG | + |
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Preference number: 3 (lower is better) Translates to: SLYNLMSNNQSP*TASETMCLVFE Trigger: CTCAAACACCAAACACATTGTTTCTGAGGCTGTTCAGGGAGATTGGTTATTGCTCATCAAGTTATATAAGCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR TCA 72 bp | CTAAACACAGCAACAAACTTCTGGAAAGCTGCAGGCTaGCTATGGATGGCTTATACAAAATTTAAAAGAAAA | + |
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Preference number: 3 (lower is better) Translates to: LNTATNFWKAAG*LWMAYTKFKRK Trigger: TTTTCTTTTAAATTTTGTATAAGCCATCCATAGTCAGCCTGCAGCTTTCCAGAAGTTTGTTGCTGTGTTTAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| CDS-3UTR GCA 90 bp | AAGGAACAGGACGAAGTCCCCTGGGGAGTTTCCTGCAGAGCTGCCATCAGGGTGGTTCAAGAACCAAACTaGTGGCTACTTCAGACTCAT | + |
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Preference number: 4 (lower is better) Translates to: KEQDEVPWGVSCRAAIRVVQEPN*WLLQTH Trigger: ATGAGTCTGAAGTAGCCAGCAGTTTGGTTCTTGAAC...CACCCTGATGGCAGCTCTGCAGGAAACTCCCCAGGGGACTTCGTCCTGTTCCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031971.13 |
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| CDS-3UTR TCA 90 bp | CTCCAAGTTAACAGTATGTACTGCAGGGGCAAGTTGCTTTCATACCCCACAGAGCGCCAACCCTTCCAATaGACAACCAGAGACACTGTG | + |
|
Preference number: 4 (lower is better) Translates to: LQVNSMYCRGKLLSYPTERQPFQ*TTRDTV Trigger: CACAGTGTCTCTGGTTGTTCATTGGAAGGGTTGGCG...CTCTGTGGGGTATGAAAGCAACTTGCCCCTGCAGTACATACTGTTAACTTGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031971.13 |
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| 3UTR CAA 72 bp | CTGCTCTACTTCTGCAGCCTACACTCAGGAGTGGCTTaGGCTTCCAGTTGGTTCCTGTACAGGATGAGATTT | + |
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Preference number: 4 (lower is better) Translates to: LLYFCSLHSGVA*ASSWFLYRMRF Trigger: AAATCTCATCCTGTACAGGAACCAACTGGAAGCCAAAGCCACTCCTGAGTGTAGGCTGCAGAAGTAGAGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| CDS-3UTR GCA 90 bp | TCCAAGTTAACAGTATGTACTGCAGGGGCAAGTTGCTTTCATACCCCACAGAGTCAACCAGAGACACTGTaGACCACGAGCTTCTTACCA | + |
|
Preference number: 4 (lower is better) Translates to: SKLTVCTAGASCFHTPQSQPETL*TTSFLP Trigger: TGGTAAGAAGCTCGTGGTGCACAGTGTCTCTGGTTG...ACTCTGTGGGGTATGAAAGCAACTTGCCCCTGCAGTACATACTGTTAACTTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031971.13 |
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| 3UTR CAA 72 bp | AACTTCCTGAGCAGTCCTGACAATTTCAGTGCTTGGTaGGTCAACAGTGGAACCAGGAGACACAGTGAAGTT | + |
|
Preference number: 4 (lower is better) Translates to: NFLSSPDNFSAW*VNSGTRRHSEV Trigger: AACTTCACTGTGTCTCCTGGTTCCACTGTTGACCAACCAAGCACTGAAATTGTCAGGACTGCTCAGGAAGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| CDS-3UTR TCA 90 bp | CATCACAGTTCTGCAACTGCCCGAGTATACACCAAGATTCAATTCTCCAAGTTAGCTTCTTACCAGCTATaGTTGTTGTTGCTTGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: HHSSATARVYTKIQFSKLASYQL*LLLLAA Trigger: GGCGGCAAGCAACAACAATCATAGCTGGTAAGAAGC...TAACTTGGAGAATTGAATCTTGGTGTATACTCGGGCAGTTGCAGAACTGTGATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031971.13 |
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| CDS-3UTR CCA 90 bp | CTCCAAGTTAACAGTATGTACTGCAGGGGCAAGTTGCTTTCATACCCCACAGAGCTAACGTCACCCATTTaGTATACTTCACTATCCCCT | + |
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Preference number: 4 (lower is better) Translates to: LQVNSMYCRGKLLSYPTELTSPI*YTSLSP Trigger: AGGGGATAGTGAAGTATACCAAATGGGTGACGTTAG...CTCTGTGGGGTATGAAAGCAACTTGCCCCTGCAGTACATACTGTTAACTTGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031971.13 |
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| CDS-3UTR CCA 90 bp | AGGAATCACTTTAGAAAGCAAGAGTCCATAACACTGAGCAGGGATCCGGAACTTCTAACGTCACCCATTTaGTATACTTCACTATCCCCT | + |
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Preference number: 4 (lower is better) Translates to: RNHFRKQESITLSRDPELLTSPI*YTSLSP Trigger: AGGGGATAGTGAAGTATACCAAATGGGTGACGTTAG...AAGTTCCGGATCCCTGCTCAGTGTTATGGACTCTTGCTTTCTAAAGTGATTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR CAA 72 bp | TCAGATCTAGGTGTAATCACAGGAAGATCTAGTATGTaGACCAATGATCCCAGTGGCAGAAAAAGTAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: SDLGVITGRSSM*TNDPSGRKSRQ Trigger: CTGCCTACTTTTTCTGCCACTGGGATCATTGGTCAACATACTAGATCTTCCTGTGATTACACCTAGATCTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| CDS-3UTR TCA 90 bp | CAATTCTCCAAGTTAACAGTATGTACTGCAGGGGCAAGTTGCTTTCATACCCCATCATGTCTTACAAACTaGCGAAATACCTGTAACACA | + |
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Preference number: 4 (lower is better) Translates to: QFSKLTVCTAGASCFHTPSCLTN*RNTCNT Trigger: TGTGTTACAGGTATTTCGTCAGTTTGTAAGACATGA...TGGGGTATGAAAGCAACTTGCCCCTGCAGTACATACTGTTAACTTGGAGAATTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031971.13 |
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| 3UTR CAA 72 bp | GAACAGCCTCAGAAACAATGTGTTTGGTGTTTGAGGTaGTATGAGTTAATCATCCAGTCTGAGAATTGTAGT | + |
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Preference number: 4 (lower is better) Translates to: EQPQKQCVWCLR*YELIIQSENCS Trigger: ACTACAATTCTCAGACTGGATGATTAACTCATACAACCTCAAACACCAAACACATTGTTTCTGAGGCTGTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| CDS-3UTR GCA 90 bp | AACAAGACACTAAGTAGAGAAAGTAGATATAGCCTGAAGGGTGATATAGTTGTTGTTCAAGAACCAAACTaGTGGCTACTTCAGACTCAT | + |
|
Preference number: 4 (lower is better) Translates to: NKTLSRESRYSLKGDIVVVQEPN*WLLQTH Trigger: ATGAGTCTGAAGTAGCCAGCAGTTTGGTTCTTGAAC...AACAACTATATCACCCTTCAGGCTATATCTACTTTCTCTACTTAGTGTCTTGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| 3UTR CAA 72 bp | AATCACATCAAAAACAGAAGTTTCAAGACCCCAAACTaGAATTACAAGTCCCTAGAGTGTCTTAGTGCTGTT | + |
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Preference number: 4 (lower is better) Translates to: NHIKNRSFKTPN*NYKSLECLSAV Trigger: AACAGCACTAAGACACTCTAGGGACTTGTAATTCAAGTTTGGGGTCTTGAAACTTCTGTTTTTGATGTGATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| CDS-3UTR TCA 90 bp | GTTGTTATACACTCTTATAGCAAAATAAATCCCTGTGGTCTAAAACACAGCAGCTCATGTCTTACAAACTaGCGAAATACCTGTAACACA | + |
|
Preference number: 4 (lower is better) Translates to: VVIHSYSKINPCGLKHSSSCLTN*RNTCNT Trigger: TGTGTTACAGGTATTTCGTCAGTTTGTAAGACATGA...GCTGCTGTGTTTTAGACCACAGGGATTTATTTTGCTATAAGAGTGTATAACAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| CDS-3UTR CAA 90 bp | ATCCAGTCTGAGAATTGTAGTGGAAGTGATCAGTGGTTTTCACACTGGCCCATCACTAACGTCACCCATTaGGTATACTTCACTATCCCC | + |
|
Preference number: 5 (lower is better) Translates to: IQSENCSGSDQWFSHWPITNVTH*VYFTIP Trigger: GGGGATAGTGAAGTATACCAAATGGGTGACGTTAGT...GATGGGCCAGTGTGAAAACCACTGATCACTTCCACTACAATTCTCAGACTGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114779.9 |
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| CDS-3UTR CAA 90 bp | CAGTTCTGCAACTGCCCGAGTATACACCAAGATTCAATTCTCCAAGTTAACAGTACTAACGTCACCCATTaGGTATACTTCACTATCCCC | + |
|
Preference number: 5 (lower is better) Translates to: QFCNCPSIHQDSILQVNSTNVTH*VYFTIP Trigger: GGGGATAGTGAAGTATACCAAATGGGTGACGTTAGT...ACTGTTAACTTGGAGAATTGAATCTTGGTGTATACTCGGGCAGTTGCAGAACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031971.13 |
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| CDS GCA 72 bp | TACGCCAACCCTTCCAATGAACAACCAGAGACACTGTaGACCACGAGCTTCTTACCAGCTATGATTGTTGTT | + |
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Preference number: 6 (lower is better) Translates to: YANPSNEQPETL*TTSFLPAMIVV Trigger: AACAACAATCATAGCTGGTAAGAAGCTCGTGGTGCACAGTGTCTCTGGTTGTTCATTGGAAGGGTTGGCGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031971.13 |
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