Pregenerated sensors for SSB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068882Ensembl transcript IDs: ENSMUST00000090852.11, ENSMUST00000132186.8, ENSMUST00000132603.2, ENSMUST00000166411.8
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TCTCTTCCATCTCTTCCTCTTTTCATTGGTCCACGACGACGATCATCATCATCAAATCTTCCACCTGCATaGCCTCCTTTTGACTTCCAT | + |
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Preference number: 2 (lower is better) Translates to: SLPSLPLFIGPRRRSSSSNLPPA*PPFDFH Trigger: ATGGAAGTCAAAAGGAGGGCATGCAGGTGGAAGATT...TGATGATGATGATCGTCGTCGTGGACCAATGAAAAGAGGAAGAGATGGAAGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000132186.8 |
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| 3UTR-3UTR GCA 90 bp | CCCTTCCCTTTTCCTTTAAATCTGCGGGCTGCTGTAAAAACATGGCTTCCTTTATCTGGCTTTCTCAAGTaGTTCCTTAGCCTTTTCTTT | + |
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Preference number: 2 (lower is better) Translates to: PFPFPLNLRAAVKTWLPLSGFLK*FLSLFF Trigger: AAAGAAAAGGCTAAGGAAGCACTTGAGAAAGCCAGA...TAAAGGAAGCCATGTTTTTACAGCAGCCCGCAGATTTAAAGGAAAAGGGAAGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000132186.8 |
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| 3UTR-3UTR CCA 90 bp | ATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCCACTCTTACCAAGGTAAATaGGTAAATATAAAGTCAGCC | + |
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Preference number: 2 (lower is better) Translates to: IVVCVHPVFKSFCNGHFHSYQGK*VNIKSA Trigger: GGCTGACTTTATATTTACCCATTTACCTTGGTAAGA...GTGGAAATGACCATTACAAAAGCTTTTGAATACTGGATGTACACAGACTACAAT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| 3UTR CCA 72 bp | CCTTTTCCTTTAAATCTGCGGGCTGCTGTAAAAACATaGCTTCCTTTAAATCTTCCACCTGCATGCCCTCCT | + |
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Preference number: 3 (lower is better) Translates to: PFPLNLRAAVKT*LPLNLPPACPP Trigger: AGGAGGGCATGCAGGTGGAAGATTTAAAGGAAGCCATGTTTTTACAGCAGCCCGCAGATTTAAAGGAAAAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000132186.8 |
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| 3UTR CCA 72 bp | ACTTCAGTAAGCATCCCATCTTTCCTTCTAGAGCTCTaGTTTCAGTACTTCCTGGCTTGTGTCTTCCTTCAT | + |
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Preference number: 3 (lower is better) Translates to: TSVSIPSFLLEL*FQYFLACVFLH Trigger: ATGAAGGAAGACACAAGCCAGGAAGTACTGAAACCAGAGCTCTAGAAGGAAAGATGGGATGCTTACTGAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132186.8 |
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| 3UTR-3UTR CAA 90 bp | TCTCTTCCATCTCTTCCTCTTTTCATTGGTCCACGACGACGATCATCATCATCATTCCAAGTCACCTTTTaGTTCCTTAACAGTAGGTTA | + |
|
Preference number: 3 (lower is better) Translates to: SLPSLPLFIGPRRRSSSSFQVTF*FLNSRL Trigger: TAACCTACTGTTAAGGAACAAAAAGGTGACTTGGAA...TGATGATGATGATCGTCGTCGTGGACCAATGAAAAGAGGAAGAGATGGAAGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000132186.8 |
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| CDS-3UTR GCA 90 bp | GAAGAAGGGCTTATACTCGCAAGAGTCAATATTTTAGTTGAAGTTCTTTGTGAATCCTCTTCCTTTGGGTaGCCCAGCATAACCAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: EEGLILARVNILVEVLCESSSFG*PSITRP Trigger: AGGCCTGGTTATGCTGGGGCACCCAAAGGAAGAGGA...TTCACAAAGAACTTCAACTAAAATATTGACTCTTGCGAGTATAAGCCCTTCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR GCA 90 bp | ATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCCACTCCTCTTCCTTTGGGTaGCCCAGCATAACCAGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: IVVCVHPVFKSFCNGHFHSSSFG*PSITRP Trigger: AGGCCTGGTTATGCTGGGGCACCCAAAGGAAGAGGA...GTGGAAATGACCATTACAAAAGCTTTTGAATACTGGATGTACACAGACTACAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR TCA 90 bp | TCTCTTCCATCTCTTCCTCTTTTCATTGGTCCACGACGACGATCATCATCATCAGAGTGGTCTGCTTGGTaGTCTTCTAATTTTAGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: SLPSLPLFIGPRRRSSSSEWSAW*SSNFSF Trigger: AAAACTAAAATTAGAAGATCACCAAGCAGACCACTC...TGATGATGATGATCGTCGTCGTGGACCAATGAAAAGAGGAAGAGATGGAAGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000132186.8 |
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| CDS-3UTR TCA 90 bp | AAAACTTCAGTAAGCATCCCATCTTTCCTTCTAGAGCTCTGGTTTCAGTACTTCGCCGGTTTAGCCTGTTaGATTTTATCATTGTTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: KTSVSIPSFLLELWFQYFAGLAC*ILSLFP Trigger: TGGAAACAATGATAAAATTCAACAGGCTAAACCGGC...GAAGTACTGAAACCAGAGCTCTAGAAGGAAAGATGGGATGCTTACTGAAGTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000132186.8 |
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| CDS-3UTR GCA 90 bp | ATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCCACAATCTTCCACCTGCATaGCCTCCTTTTGACTTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: IVVCVHPVFKSFCNGHFHNLPPA*PPFDFH Trigger: ATGGAAGTCAAAAGGAGGGCATGCAGGTGGAAGATT...GTGGAAATGACCATTACAAAAGCTTTTGAATACTGGATGTACACAGACTACAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR GCA 90 bp | CCAATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCAATCTTCCACCTGCATaGCCTCCTTTTGACTTCCAT | + |
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Preference number: 4 (lower is better) Translates to: PIVVCVHPVFKSFCNGHFNLPPA*PPFDFH Trigger: ATGGAAGTCAAAAGGAGGGCATGCAGGTGGAAGATT...GAAATGACCATTACAAAAGCTTTTGAATACTGGATGTACACAGACTACAATTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR CCA 90 bp | CCAATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCGGTTTCAGTACTTCCTaGCTTGTGTCTTCCTTCATG | + |
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Preference number: 4 (lower is better) Translates to: PIVVCVHPVFKSFCNGHFGFSTS*LVSSFM Trigger: CATGAAGGAAGACACAAGCCAGGAAGTACTGAAACC...GAAATGACCATTACAAAAGCTTTTGAATACTGGATGTACACAGACTACAATTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR CCA 90 bp | GAAGAAGGGCTTATACTCGCAAGAGTCAATATTTTAGTTGAAGTTCTTTGTGAAGGTTTCAGTACTTCCTaGCTTGTGTCTTCCTTCATG | + |
|
Preference number: 4 (lower is better) Translates to: EEGLILARVNILVEVLCEGFSTS*LVSSFM Trigger: CATGAAGGAAGACACAAGCCAGGAAGTACTGAAACC...TTCACAAAGAACTTCAACTAAAATATTGACTCTTGCGAGTATAAGCCCTTCTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR CCA 90 bp | ATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCCACTTCCTTCTAGAGCTCTaGTTTCAGTACTTCCTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: IVVCVHPVFKSFCNGHFHFLLEL*FQYFLA Trigger: AGCCAGGAAGTACTGAAACCAGAGCTCTAGAAGGAA...GTGGAAATGACCATTACAAAAGCTTTTGAATACTGGATGTACACAGACTACAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR CCA 90 bp | GAAGAAGGGCTTATACTCGCAAGAGTCAATATTTTAGTTGAAGTTCTTTGTGAATTCCTTCTAGAGCTCTaGTTTCAGTACTTCCTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: EEGLILARVNILVEVLCEFLLEL*FQYFLA Trigger: AGCCAGGAAGTACTGAAACCAGAGCTCTAGAAGGAA...TTCACAAAGAACTTCAACTAAAATATTGACTCTTGCGAGTATAAGCCCTTCTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR CCA 90 bp | ATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCCACTCTTCCTCTTTTCATTaGTCCACGACGACGATCATC | + |
|
Preference number: 4 (lower is better) Translates to: IVVCVHPVFKSFCNGHFHSSSFH*STTTII Trigger: GATGATCGTCGTCGTGGACCAATGAAAAGAGGAAGA...GTGGAAATGACCATTACAAAAGCTTTTGAATACTGGATGTACACAGACTACAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR TCA 90 bp | ATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCCACTCTTTTCTTATGCTTTaGTGCGGGTTCTTCTCTGTC | + |
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Preference number: 4 (lower is better) Translates to: IVVCVHPVFKSFCNGHFHSFLML*CGFFSV Trigger: GACAGAGAAGAACCCGCATCAAAGCATAAGAAAAGA...GTGGAAATGACCATTACAAAAGCTTTTGAATACTGGATGTACACAGACTACAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR TCA 90 bp | CCAATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCTCTTTTCTTATGCTTTaGTGCGGGTTCTTCTCTGTC | + |
|
Preference number: 4 (lower is better) Translates to: PIVVCVHPVFKSFCNGHFSFLML*CGFFSV Trigger: GACAGAGAAGAACCCGCATCAAAGCATAAGAAAAGA...GAAATGACCATTACAAAAGCTTTTGAATACTGGATGTACACAGACTACAATTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR TCA 90 bp | ATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCCACGCCGGTTTAGCCTGTTaGATTTTATCATTGTTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: IVVCVHPVFKSFCNGHFHAGLAC*ILSLFP Trigger: TGGAAACAATGATAAAATTCAACAGGCTAAACCGGC...GTGGAAATGACCATTACAAAAGCTTTTGAATACTGGATGTACACAGACTACAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR TCA 90 bp | GAAGAAGGGCTTATACTCGCAAGAGTCAATATTTTAGTTGAAGTTCTTTGTGAAGCCGGTTTAGCCTGTTaGATTTTATCATTGTTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: EEGLILARVNILVEVLCEAGLAC*ILSLFP Trigger: TGGAAACAATGATAAAATTCAACAGGCTAAACCGGC...TTCACAAAGAACTTCAACTAAAATATTGACTCTTGCGAGTATAAGCCCTTCTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR GCA 90 bp | GAAGAAGGGCTTATACTCGCAAGAGTCAATATTTTAGTTGAAGTTCTTTGTGAATCTGGCTTTCTCAAGTaGTTCCTTAGCCTTTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: EEGLILARVNILVEVLCESGFLK*FLSLFF Trigger: AAAGAAAAGGCTAAGGAAGCACTTGAGAAAGCCAGA...TTCACAAAGAACTTCAACTAAAATATTGACTCTTGCGAGTATAAGCCCTTCTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR TCA 90 bp | ATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCCACGAGTGGTCTGCTTGGTaGTCTTCTAATTTTAGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: IVVCVHPVFKSFCNGHFHEWSAW*SSNFSF Trigger: AAAACTAAAATTAGAAGATCACCAAGCAGACCACTC...GTGGAAATGACCATTACAAAAGCTTTTGAATACTGGATGTACACAGACTACAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR CCA 90 bp | GAAGAAGGGCTTATACTCGCAAGAGTCAATATTTTAGTTGAAGTTCTTTGTGAAGCTGCTGTAAAAACATaGCTTCCTTTAAATCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: EEGLILARVNILVEVLCEAAVKT*LPLNLP Trigger: TGGAAGATTTAAAGGAAGCCATGTTTTTACAGCAGC...TTCACAAAGAACTTCAACTAAAATATTGACTCTTGCGAGTATAAGCCCTTCTTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR GCA 90 bp | GAAGAAGGGCTTATACTCGCAAGAGTCAATATTTTAGTTGAAGTTCTTTGTGAACTCCACAAACTTCTTTaGAGACTGAATACTATCAAA | + |
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Preference number: 4 (lower is better) Translates to: EEGLILARVNILVEVLCELHKLL*RLNTIK Trigger: TTTGATAGTATTCAGTCTGCAAAGAAGTTTGTGGAG...TTCACAAAGAACTTCAACTAAAATATTGACTCTTGCGAGTATAAGCCCTTCTTC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR GCA 90 bp | CCAATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCCTCCACAAACTTCTTTaGAGACTGAATACTATCAAA | + |
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Preference number: 4 (lower is better) Translates to: PIVVCVHPVFKSFCNGHFLHKLL*RLNTIK Trigger: TTTGATAGTATTCAGTCTGCAAAGAAGTTTGTGGAG...GAAATGACCATTACAAAAGCTTTTGAATACTGGATGTACACAGACTACAATTGG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR GCA 90 bp | ATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCCACTTTTCTCTTTTCTTATaGTTTGATGCGGGTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: IVVCVHPVFKSFCNGHFHFSLFL*FDAGSS Trigger: AGAAGAACCCGCATCAAAGCATAAGAAAAGAGAAAA...GTGGAAATGACCATTACAAAAGCTTTTGAATACTGGATGTACACAGACTACAAT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR GCA 90 bp | GAAGAAGGGCTTATACTCGCAAGAGTCAATATTTTAGTTGAAGTTCTTTGTGAATTTTCTCTTTTCTTATaGTTTGATGCGGGTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: EEGLILARVNILVEVLCEFSLFL*FDAGSS Trigger: AGAAGAACCCGCATCAAAGCATAAGAAAAGAGAAAA...TTCACAAAGAACTTCAACTAAAATATTGACTCTTGCGAGTATAAGCCCTTCTTC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR CAA 90 bp | GAAGAAGGGCTTATACTCGCAAGAGTCAATATTTTAGTTGAAGTTCTTTGTGAATCAGTACTTCCTGGCTaGTGTCTTCCTTCATGCTCT | + |
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Preference number: 5 (lower is better) Translates to: EEGLILARVNILVEVLCESVLPG*CLPSCS Trigger: AGAGCATGAAGGAAGACACAAGCCAGGAAGTACTGA...TTCACAAAGAACTTCAACTAAAATATTGACTCTTGCGAGTATAAGCCCTTCTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR CAA 90 bp | CCAATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCTCAGTACTTCCTGGCTaGTGTCTTCCTTCATGCTCT | + |
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Preference number: 5 (lower is better) Translates to: PIVVCVHPVFKSFCNGHFSVLPG*CLPSCS Trigger: AGAGCATGAAGGAAGACACAAGCCAGGAAGTACTGA...GAAATGACCATTACAAAAGCTTTTGAATACTGGATGTACACAGACTACAATTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR CAA 90 bp | GAAGAAGGGCTTATACTCGCAAGAGTCAATATTTTAGTTGAAGTTCTTTGTGAACTGCATGCCCTCCTTTaGACTTCCATTTGTTTAGGG | + |
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Preference number: 5 (lower is better) Translates to: EEGLILARVNILVEVLCELHALL*TSICLG Trigger: CCCTAAACAAATGGAAGTCAAAAGGAGGGCATGCAG...TTCACAAAGAACTTCAACTAAAATATTGACTCTTGCGAGTATAAGCCCTTCTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR CAA 90 bp | CCAATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCCTGCATGCCCTCCTTTaGACTTCCATTTGTTTAGGG | + |
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Preference number: 5 (lower is better) Translates to: PIVVCVHPVFKSFCNGHFLHALL*TSICLG Trigger: CCCTAAACAAATGGAAGTCAAAAGGAGGGCATGCAG...GAAATGACCATTACAAAAGCTTTTGAATACTGGATGTACACAGACTACAATTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR CAA 90 bp | CCAATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCCTCTTTTCTTATGCTTaGATGCGGGTTCTTCTCTGT | + |
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Preference number: 5 (lower is better) Translates to: PIVVCVHPVFKSFCNGHFLFSYA*MRVLLC Trigger: ACAGAGAAGAACCCGCATCAAAGCATAAGAAAAGAG...GAAATGACCATTACAAAAGCTTTTGAATACTGGATGTACACAGACTACAATTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR CAA 90 bp | GAAGAAGGGCTTATACTCGCAAGAGTCAATATTTTAGTTGAAGTTCTTTGTGAACTCTTTTCTTATGCTTaGATGCGGGTTCTTCTCTGT | + |
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Preference number: 5 (lower is better) Translates to: EEGLILARVNILVEVLCELFSYA*MRVLLC Trigger: ACAGAGAAGAACCCGCATCAAAGCATAAGAAAAGAG...TTCACAAAGAACTTCAACTAAAATATTGACTCTTGCGAGTATAAGCCCTTCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR CAA 90 bp | GAAGAAGGGCTTATACTCGCAAGAGTCAATATTTTAGTTGAAGTTCTTTGTGAACATCATCATCAAATCTaGTCCTCCTTCCATGAAACT | + |
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Preference number: 5 (lower is better) Translates to: EEGLILARVNILVEVLCEHHHQI*SSFHET Trigger: AGTTTCATGGAAGGAGGACAAGATTTGATGATGATG...TTCACAAAGAACTTCAACTAAAATATTGACTCTTGCGAGTATAAGCCCTTCTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR CAA 90 bp | ATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCCACCATCATCATCAAATCTaGTCCTCCTTCCATGAAACT | + |
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Preference number: 5 (lower is better) Translates to: IVVCVHPVFKSFCNGHFHHHHQI*SSFHET Trigger: AGTTTCATGGAAGGAGGACAAGATTTGATGATGATG...GTGGAAATGACCATTACAAAAGCTTTTGAATACTGGATGTACACAGACTACAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR CAA 90 bp | GAAGAAGGGCTTATACTCGCAAGAGTCAATATTTTAGTTGAAGTTCTTTGTGAATCCTTAGCCTTTTCTTaGAAGAGAATTATTCCCTCT | + |
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Preference number: 5 (lower is better) Translates to: EEGLILARVNILVEVLCESLAFS*KRIIPS Trigger: AGAGGGAATAATTCTCTTCAAAGAAAAGGCTAAGGA...TTCACAAAGAACTTCAACTAAAATATTGACTCTTGCGAGTATAAGCCCTTCTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR CAA 90 bp | GAAGAAGGGCTTATACTCGCAAGAGTCAATATTTTAGTTGAAGTTCTTTGTGAATTCCAAGTCACCTTTTaGTTCCTTAACAGTAGGTTA | + |
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Preference number: 5 (lower is better) Translates to: EEGLILARVNILVEVLCEFQVTF*FLNSRL Trigger: TAACCTACTGTTAAGGAACAAAAAGGTGACTTGGAA...TTCACAAAGAACTTCAACTAAAATATTGACTCTTGCGAGTATAAGCCCTTCTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS-3UTR CAA 90 bp | ATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCCACTTCCAAGTCACCTTTTaGTTCCTTAACAGTAGGTTA | + |
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Preference number: 5 (lower is better) Translates to: IVVCVHPVFKSFCNGHFHFQVTF*FLNSRL Trigger: TAACCTACTGTTAAGGAACAAAAAGGTGACTTGGAA...GTGGAAATGACCATTACAAAAGCTTTTGAATACTGGATGTACACAGACTACAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000090852.11 ENSMUST00000166411.8 |
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| CDS CCA 72 bp | CCTTTTCCTTTAAATCTGCGGGCTGCTGTAAAAACATaGCTTCCTTTAAATCTTCCACCATGCCCTCCTTTT | + |
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Preference number: 6 (lower is better) Translates to: PFPLNLRAAVKT*LPLNLPPCPPF Trigger: AAAAGGAGGGCATGGTGGAAGATTTAAAGGAAGCCATGTTTTTACAGCAGCCCGCAGATTTAAAGGAAAAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000132603.2 |
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