Pregenerated sensors for SS18L2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032526Ensembl transcript IDs: ENSMUST00000035113.11, ENSMUST00000215104.2, ENSMUST00000215833.2, ENSMUST00000215966.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATAACCTTTAGAGGGCGGAGCACAGGCCATCCTCCGGCCGCAACCTaGCCAGTGCAAAGATTACAGGCATGCAGCACCACTCAAGCCAAG | + |
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Preference number: 1 (lower is better) Translates to: ITFRGRSTGHPPAAT*PVQRLQACSTTQAK Trigger: CTTGGCTTGAGTGGTGCTGCATGCCTGTAATCTTTGCACTGGGCAGGTTGCGGCCGGAGGATGGCCTGTGCTCCGCCCTCTAAAGGTTAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR CCA 90 bp | GTAGTACCACTGCTGGGTGTGGTGGTACATCTTAGTCCCAGCACATaGGAGGCAGAGGCAGTGGGAATTTCTGACTTCACAGTCAACCTG | + |
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Preference number: 1 (lower is better) Translates to: VVPLLGVVVHLSPST*EAEAVGISDFTVNL Trigger: CAGGTTGACTGTGAAGTCAGAAATTCCCACTGCCTCTGCCTCCCATGTGCTGGGACTAAGATGTACCACCACACCCAGCAGTGGTACTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR CCA 90 bp | GTGTGGTGGTACATCTTAGTCCCAGCACATGGGAGGCAGAGGCAGTaGGAATTTCTGACTTCACAGTCAACCTGGACTACAGAGCAAGTA | + |
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Preference number: 1 (lower is better) Translates to: VWWYILVPAHGRQRQ*EFLTSQSTWTTEQV Trigger: TACTTGCTCTGTAGTCCAGGTTGACTGTGAAGTCAGAAATTCCCACTGCCTCTGCCTCCCATGTGCTGGGACTAAGATGTACCACCACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR CCA 90 bp | ACTATAGCCTTGGCTGTCTTCAAAGTCAGGAGATCCATCTGTCTCTaGCTCCCCAAGTATACCACCACACCAGGCTTTCCCAACCTCGTT | + |
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Preference number: 1 (lower is better) Translates to: TIALAVFKVRRSICL*LPKYTTTPGFPNLV Trigger: AACGAGGTTGGGAAAGCCTGGTGTGGTGGTATACTTGGGGAGCCAGAGACAGATGGATCTCCTGACTTTGAAGACAGCCAAGGCTATAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR TCA 90 bp | CCCTGTCTTCTACTTACCCTACCTGATTTCTGCAGTGCTAGAAAGTaGACCCAGGGCTTCCTATACATGACAGGCATGCCCTGCCTTTAT | + |
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Preference number: 1 (lower is better) Translates to: PCLLLTLPDFCSARK*TQGFLYMTGMPCLY Trigger: ATAAAGGCAGGGCATGCCTGTCATGTATAGGAAGCCCTGGGTTCACTTTCTAGCACTGCAGAAATCAGGTAGGGTAAGTAGAAGACAGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR CCA 90 bp | AGAACAGCTTTCCCTCTGACTCAGTGTCACAGGTCATCAACCAAATaGTCTTACTATAGCCTTGGCTGTCTTCAAAGTCAGGAGATCCAT | + |
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Preference number: 1 (lower is better) Translates to: RTAFPLTQCHRSSTK*SYYSLGCLQSQEIH Trigger: ATGGATCTCCTGACTTTGAAGACAGCCAAGGCTATAGTAAGACCATTTGGTTGATGACCTGTGACACTGAGTCAGAGGGAAAGCTGTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR TCA 90 bp | TCAGAATACAGTAGAGTTGGTAGCGAGTTTCTTCACAGTCTAAAATaGATGGGACTTTTTGCCCATGTTCTGAGCAGCTCTCTGATTCCC | + |
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Preference number: 1 (lower is better) Translates to: SEYSRVGSEFLHSLK*MGLFAHVLSSSLIP Trigger: GGGAATCAGAGAGCTGCTCAGAACATGGGCAAAAAGTCCCATTCATTTTAGACTGTGAAGAAACTCGCTACCAACTCTACTGTATTCTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000035113.11 ENSMUST00000215966.2 |
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| 3UTR GCA 90 bp | CACAATGTGAAGAAACAGAATAAATTTGTAGGACCTTTGTATCTTTaGACAAGAGTCAGTATACCAAAAAGCATGTCTGCAGGCATTTTC | + |
|
Preference number: 1 (lower is better) Translates to: HNVKKQNKFVGPLYL*TRVSIPKSMSAGIF Trigger: GAAAATGCCTGCAGACATGCTTTTTGGTATACTGACTCTTGTGCAAAGATACAAAGGTCCTACAAATTTATTCTGTTTCTTCACATTGTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR-3UTR CCA 90 bp | GATCCATCTGTCTCTGGCTCCCCAAGTATACCACCACACCAGGCTTTCCCAACCAGACTGACTGAGTGCTaGTTAACAAAATGGCCTGAT | + |
|
Preference number: 2 (lower is better) Translates to: DPSVSGSPSIPPHQAFPTRLTEC*LTKWPD Trigger: ATCAGGCCATTTTGTTAACCAGCACTCAGTCAGTCT...GGTTGGGAAAGCCTGGTGTGGTGGTATACTTGGGGAGCCAGAGACAGATGGATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR-3UTR CCA 90 bp | TGCTGGGTGTGGTGGTACATCTTAGTCCCAGCACATGGGAGGCAGAGGCAGTGGATTGTCTATAAGAAATaGGACCTAGTTCTTGGACCA | + |
|
Preference number: 2 (lower is better) Translates to: CWVWWYILVPAHGRQRQWIVYKK*DLVLGP Trigger: TGGTCCAAGAACTAGGTCCCATTTCTTATAGACAAT...CCACTGCCTCTGCCTCCCATGTGCTGGGACTAAGATGTACCACCACACCCAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR-3UTR TCA 90 bp | CAGTCTCCTCATCTCCTATATTGCAGCCCCGCTGTATTCTACAGAGCTGGAGTGACCAAAGTAAGCACATaGCATAGCCACTGTCAATTG | + |
|
Preference number: 2 (lower is better) Translates to: QSPHLLYCSPAVFYRAGVTKVST*HSHCQL Trigger: CAATTGACAGTGGCTATGTCATGTGCTTACTTTGGT...CACTCCAGCTCTGTAGAATACAGCGGGGCTGCAATATAGGAGATGAGGAGACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR-3UTR GCA 90 bp | AACAGCAGTCTCCTCATCTCCTATATTGCAGCCCCGCTGTATTCTACAGAGCTGGCCACTGTCAATTGCTaGCCATTCAGGAAGTCATTA | + |
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Preference number: 2 (lower is better) Translates to: NSSLLISYIAAPLYSTELATVNC*PFRKSL Trigger: TAATGACTTCCTGAATGGGCAGCAATTGACAGTGGC...CAGCTCTGTAGAATACAGCGGGGCTGCAATATAGGAGATGAGGAGACTGCTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR-3UTR TCA 90 bp | GGGCTTCCTATACATGACAGGCATGCCCTGCCTTTATTCCATTTAAAGCACATAGGCAGTGGGAATTTCTaGCTTCACAGTCAACCTGGA | + |
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Preference number: 2 (lower is better) Translates to: GLPIHDRHALPLFHLKHIGSGNF*LHSQPG Trigger: TCCAGGTTGACTGTGAAGTCAGAAATTCCCACTGCC...TATGTGCTTTAAATGGAATAAAGGCAGGGCATGCCTGTCATGTATAGGAAGCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR-3UTR CCA 90 bp | CAGTCTCCTCATCTCCTATATTGCAGCCCCGCTGTATTCTACAGAGCTGGAGTGATAAACACCGCAAAATaGCAATTCTGCTGTTCCATT | + |
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Preference number: 2 (lower is better) Translates to: QSPHLLYCSPAVFYRAGVINTAK*QFCCSI Trigger: AATGGAACAGCAGAATTGCCATTTTGCGGTGTTTAT...CACTCCAGCTCTGTAGAATACAGCGGGGCTGCAATATAGGAGATGAGGAGACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR-3UTR CCA 90 bp | GAGTCTAGAATGTCAGCTCCACAGAGAGTAGGAATCTCGTGTTTCCTATTCACCTGCTGGTTAACAAAATaGCCTGATTACTTTTGGGGG | + |
|
Preference number: 2 (lower is better) Translates to: ESRMSAPQRVGISCFLFTCWLTK*PDYFWG Trigger: CCCCCAAAAGTAATCAGGCCATTTTGTTAACCAGCA...GGTGAATAGGAAACACGAGATTCCTACTCTCTGTGGAGCTGACATTCTAGACTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR-3UTR TCA 90 bp | GAGTCTAGAATGTCAGCTCCACAGAGAGTAGGAATCTCGTGTTTCCTATTCACCCTTCACAGTCTAAAATaGATGGGACTTTTTGCCCAT | + |
|
Preference number: 2 (lower is better) Translates to: ESRMSAPQRVGISCFLFTLHSLK*MGLFAH Trigger: ATGGGCAAAAAGTCCCATTCATTTTAGACTGTGAAG...GGTGAATAGGAAACACGAGATTCCTACTCTCTGTGGAGCTGACATTCTAGACTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR-3UTR CCA 90 bp | GAGTCAGTATACCAAAAAGCATGTCTGCAGGCATTTTCTAAACATGAGAACGTGATGGGACCTAGTTCTTaGACCAAATTTAGAAAAGGG | + |
|
Preference number: 2 (lower is better) Translates to: ESVYQKACLQAFSKHENVMGPSS*TKFRKG Trigger: CCCTTTTCTAAATTTGGTCCAAGAACTAGGTCCCAT...CACGTTCTCATGTTTAGAAAATGCCTGCAGACATGCTTTTTGGTATACTGACTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR CAA 90 bp | TTCGACCTTCACAATGTGAAGAAACAGAATAAATTTGTAGGACCTTaGTATCTTTGCACAAGAGTCAGTATACCAAAAAGCATGTCTGCA | + |
|
Preference number: 2 (lower is better) Translates to: FDLHNVKKQNKFVGP*YLCTRVSIPKSMSA Trigger: TGCAGACATGCTTTTTGGTATACTGACTCTTGTGCAAAGATACAAAGGTCCTACAAATTTATTCTGTTTCTTCACATTGTGAAGGTCGAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR GCA 72 bp | AGAGGGCGGAGCACAGGCCATCCTCCGGCCGCAACCTaGCCAGTGCAAAGATTACAGGCATGCAGCACCACT | + |
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Preference number: 3 (lower is better) Translates to: RGRSTGHPPAAT*PVQRLQACSTT Trigger: AGTGGTGCTGCATGCCTGTAATCTTTGCACTGGGCAGGTTGCGGCCGGAGGATGGCCTGTGCTCCGCCCTCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR TCA 72 bp | CTTCTGTGTCCTCATCTCCTGTGGCTTTCCCTTCACTaGGATCTGAACACAGGGGCCTCCTCGGTATGCCTG | + |
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Preference number: 3 (lower is better) Translates to: LLCPHLLWLSLH*DLNTGASSVCL Trigger: CAGGCATACCGAGGAGGCCCCTGTGTTCAGATCTCAGTGAAGGGAAAGCCACAGGAGATGAGGACACAGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR CCA 72 bp | CTGCTGGGTGTGGTGGTACATCTTAGTCCCAGCACATaGGAGGCAGAGGCAGTGGGAATTTCTGACTTCACA | + |
|
Preference number: 3 (lower is better) Translates to: LLGVVVHLSPST*EAEAVGISDFT Trigger: TGTGAAGTCAGAAATTCCCACTGCCTCTGCCTCCCATGTGCTGGGACTAAGATGTACCACCACACCCAGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR TCA 72 bp | TCCCAGCACATGGGAGGCAGAGGCAGTGGGAATTTCTaGCTTCACAGTCAACCTGGACTACAGAGCAAGTAC | + |
|
Preference number: 3 (lower is better) Translates to: SQHMGGRGSGNF*LHSQPGLQSKY Trigger: GTACTTGCTCTGTAGTCCAGGTTGACTGTGAAGTCAGAAATTCCCACTGCCTCTGCCTCCCATGTGCTGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR CCA 72 bp | CAGAGGCAGTGGGAATTTCTGACTTCACAGTCAACCTaGACTACAGAGCAAGTACTGGGACAGCCAGGGCTA | + |
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Preference number: 3 (lower is better) Translates to: QRQWEFLTSQST*TTEQVLGQPGL Trigger: TAGCCCTGGCTGTCCCAGTACTTGCTCTGTAGTCCAGGTTGACTGTGAAGTCAGAAATTCCCACTGCCTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR CCA 72 bp | TTGGCTGTCTTCAAAGTCAGGAGATCCATCTGTCTCTaGCTCCCCAAGTATACCACCACACCAGGCTTTCCC | + |
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Preference number: 3 (lower is better) Translates to: LAVFKVRRSICL*LPKYTTTPGFP Trigger: GGGAAAGCCTGGTGTGGTGGTATACTTGGGGAGCCAGAGACAGATGGATCTCCTGACTTTGAAGACAGCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR-3UTR CAA 90 bp | CAGTCTCCTCATCTCCTATATTGCAGCCCCGCTGTATTCTACAGAGCTGGAGTGCATAGCCACTGTCAATaGCTGCCCATTCAGGAAGTC | + |
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Preference number: 3 (lower is better) Translates to: QSPHLLYCSPAVFYRAGVHSHCQ*LPIQEV Trigger: GACTTCCTGAATGGGCAGCAATTGACAGTGGCTATG...CACTCCAGCTCTGTAGAATACAGCGGGGCTGCAATATAGGAGATGAGGAGACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR-3UTR CAA 90 bp | GATCCATCTGTCTCTGGCTCCCCAAGTATACCACCACACCAGGCTTTCCCAACCGGATATCCAGCACCTTaGGCCTGCCTTATTTATTTC | + |
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Preference number: 3 (lower is better) Translates to: DPSVSGSPSIPPHQAFPTGYPAP*ACLIYF Trigger: GAAATAAATAAGGCAGGCCAAAGGTGCTGGATATCC...GGTTGGGAAAGCCTGGTGTGGTGGTATACTTGGGGAGCCAGAGACAGATGGATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR GCA 72 bp | TCACTCCCACATCTGCCCCTCGAGATCAAACAACTATaGCTTTTTGGCCTGGACTACAACAGCAGTCTCCTC | + |
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Preference number: 3 (lower is better) Translates to: SLPHLPLEIKQL*LFGLDYNSSLL Trigger: GAGGAGACTGCTGTTGTAGTCCAGGCCAAAAAGGCATAGTTGTTTGATCTCGAGGGGCAGATGTGGGAGTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR CCA 72 bp | GCCCATGTTCTGAGCAGCTCTCTGATTCCCAGGAGATaGGTTCCAATCAGTCCTCATTACAGCCTTCTGGAA | + |
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Preference number: 3 (lower is better) Translates to: AHVLSSSLIPRR*VPISPHYSLLE Trigger: TTCCAGAAGGCTGTAATGAGGACTGATTGGAACCCATCTCCTGGGAATCAGAGAGCTGCTCAGAACATGGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035113.11 ENSMUST00000215104.2 ENSMUST00000215966.2 |
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| 3UTR TCA 72 bp | CTACTTACCCTACCTGATTTCTGCAGTGCTAGAAAGTaGACCCAGGGCTTCCTATACATGACAGGCATGCCC | + |
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Preference number: 3 (lower is better) Translates to: LLTLPDFCSARK*TQGFLYMTGMP Trigger: GGGCATGCCTGTCATGTATAGGAAGCCCTGGGTTCACTTTCTAGCACTGCAGAAATCAGGTAGGGTAAGTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR TCA 72 bp | GCAGTGCTAGAAAGTGAACCCAGGGCTTCCTATACATaGCAGGCATGCCCTGCCTTTATTCCATTTAAAGCA | + |
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Preference number: 3 (lower is better) Translates to: AVLESEPRASYT*QACPAFIPFKA Trigger: TGCTTTAAATGGAATAAAGGCAGGGCATGCCTGTCATGTATAGGAAGCCCTGGGTTCACTTTCTAGCACTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR CCA 72 bp | TGCCCCTCGAGATCAAACAACTATGCCTTTTTGGCCTaGACTACAACAGCAGTCTCCTCATCTCCTATATTG | + |
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Preference number: 3 (lower is better) Translates to: CPSRSNNYAFLA*TTTAVSSSPIL Trigger: CAATATAGGAGATGAGGAGACTGCTGTTGTAGTCCAGGCCAAAAAGGCATAGTTGTTTGATCTCGAGGGGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR TCA 72 bp | CTCTGTCACCAGCTGACAGGGCTTTGTGTGAAACCCTaGCTAACTCCAGGTTCTTACCATAAACTGTCAATA | + |
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Preference number: 3 (lower is better) Translates to: LCHQLTGLCVKP*LTPGSYHKLSI Trigger: TATTGACAGTTTATGGTAAGAACCTGGAGTTAGTCAGGGTTTCACACAAAGCCCTGTCAGCTGGTGACAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR TCA 72 bp | CTAATTAAACCCACTGAGGCAGAACAGCTTTCCCTCTaGCTCAGTGTCACAGGTCATCAACCAAATGGTCTT | + |
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Preference number: 3 (lower is better) Translates to: LIKPTEAEQLSL*LSVTGHQPNGL Trigger: AAGACCATTTGGTTGATGACCTGTGACACTGAGTCAGAGGGAAAGCTGTTCTGCCTCAGTGGGTTTAATTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR TCA 72 bp | AATAAAGGAGGCCCTTGTATGACCAAAGTAAGCACATaGCATAGCCACTGTCAATTGCTGCCCATTCAGGAA | + |
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Preference number: 3 (lower is better) Translates to: NKGGPCMTKVST*HSHCQLLPIQE Trigger: TTCCTGAATGGGCAGCAATTGACAGTGGCTATGTCATGTGCTTACTTTGGTCATACAAGGGCCTCCTTTATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR TCA 72 bp | AGTAGAGTTGGTAGCGAGTTTCTTCACAGTCTAAAATaGATGGGACTTTTTGCCCATGTTCTGAGCAGCTCT | + |
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Preference number: 3 (lower is better) Translates to: SRVGSEFLHSLK*MGLFAHVLSSS Trigger: AGAGCTGCTCAGAACATGGGCAAAAAGTCCCATTCATTTTAGACTGTGAAGAAACTCGCTACCAACTCTACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000035113.11 ENSMUST00000215966.2 |
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| 3UTR CCA 72 bp | CCTCAAATGCTGGAGTCAAACATAAACACCGCAAAATaGCAATTCTGCTGTTCCATTAAGATGCTTAGAGAA | + |
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Preference number: 3 (lower is better) Translates to: PQMLESNINTAK*QFCCSIKMLRE Trigger: TTCTCTAAGCATCTTAATGGAACAGCAGAATTGCCATTTTGCGGTGTTTATGTTTGACTCCAGCATTTGAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| 3UTR GCA 72 bp | TCTTTGCACAAGAGTCAGTATACCAAAAAGCATGTCTaGAGGCATTTTCTAAACATGAGAACGTGTTTAAAA | + |
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Preference number: 3 (lower is better) Translates to: SLHKSQYTKKHV*RHFLNMRTCLK Trigger: TTTTAAACACGTTCTCATGTTTAGAAAATGCCTGCAGACATGCTTTTTGGTATACTGACTCTTGTGCAAAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| CDS-3UTR TCA 90 bp | GCCCATGTTCTGAGCAGCTCTCTGATTCCCAGGAGATGGGTTCCAATCAGTCCTGCTCGGCCCTTATTCTaGTACTCCACGATACAGCGG | + |
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Preference number: 4 (lower is better) Translates to: AHVLSSSLIPRRWVPISPARPLF*YSTIQR Trigger: CCGCTGTATCGTGGAGTATCAGAATAAGGGCCGAGC...AGGACTGATTGGAACCCATCTCCTGGGAATCAGAGAGCTGCTCAGAACATGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035113.11 ENSMUST00000215104.2 ENSMUST00000215966.2 |
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| CDS-3UTR TCA 90 bp | TCATACACCTCAGGTCCTCGCAGGTCCTCAGGTTCTACCGTGGGATCTGTTTTAGCTCGGCCCTTATTCTaGTACTCCACGATACAGCGG | + |
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Preference number: 4 (lower is better) Translates to: SYTSGPRRSSGSTVGSVLARPLF*YSTIQR Trigger: CCGCTGTATCGTGGAGTATCAGAATAAGGGCCGAGC...TAAAACAGATCCCACGGTAGAACCTGAGGACCTGCGAGGACCTGAGGTGTATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035113.11 ENSMUST00000215833.2 |
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| CDS-3UTR TCA 90 bp | TCATACACCTCAGGTCCTCGCAGGTCCTCAGGTTCTACCGTGGGATCTGTTTTACGCTGGATTGTCTCTTaGTTGACCTTGGCTTTGCCG | + |
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Preference number: 4 (lower is better) Translates to: SYTSGPRRSSGSTVGSVLRWIVS*LTLALP Trigger: CGGCAAAGCCAAGGTCAATCAAGAGACAATCCAGCG...TAAAACAGATCCCACGGTAGAACCTGAGGACCTGCGAGGACCTGAGGTGTATGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035113.11 ENSMUST00000215833.2 |
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| CDS-3UTR TCA 90 bp | TGCCCATGTTCTGAGCAGCTCTCTGATTCCCAGGAGATGGGTTCCAATCAGTCCCTATGTAACACATGCTaGTACTGGACGCACTCGTTC | + |
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Preference number: 4 (lower is better) Translates to: CPCSEQLSDSQEMGSNQSLCNTC*YWTHSF Trigger: GAACGAGTGCGTCCAGTATCAGCATGTGTTACATAG...GGACTGATTGGAACCCATCTCCTGGGAATCAGAGAGCTGCTCAGAACATGGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035113.11 ENSMUST00000215104.2 |
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| CDS-3UTR TCA 90 bp | AATGGGACTTTTTGCCCATGTTCTGAGCAGCTCTCTGATTCCCAGGAGATGGGTGGATTGTCTCTTGATTaGCCTTGGCTTTGCCGCGTA | + |
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Preference number: 4 (lower is better) Translates to: NGTFCPCSEQLSDSQEMGGLSLD*PWLCRV Trigger: TACGCGGCAAAGCCAAGGTCAATCAAGAGACAATCC...ACCCATCTCCTGGGAATCAGAGAGCTGCTCAGAACATGGGCAAAAAGTCCCATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035113.11 ENSMUST00000215966.2 |
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| CDS-3UTR TCA 90 bp | ATACACCTCAGGTCCTCGCAGGTCCTCAGGTTCTACCGTGGGATCTGTTTTATTGGATTGTCTCTTGATTaGCCTTGGCTTTGCCGCGTA | + |
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Preference number: 4 (lower is better) Translates to: IHLRSSQVLRFYRGICFIGLSLD*PWLCRV Trigger: TACGCGGCAAAGCCAAGGTCAATCAAGAGACAATCC...AATAAAACAGATCCCACGGTAGAACCTGAGGACCTGCGAGGACCTGAGGTGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035113.11 ENSMUST00000215833.2 |
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| CDS-3UTR TCA 90 bp | AAAATGAATGGGACTTTTTGCCCATGTTCTGAGCAGCTCTCTGATTCCCAGGAGGCTCGGCCCTTATTCTaGTACTCCACGATACAGCGG | + |
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Preference number: 4 (lower is better) Translates to: KMNGTFCPCSEQLSDSQEARPLF*YSTIQR Trigger: CCGCTGTATCGTGGAGTATCAGAATAAGGGCCGAGC...CTCCTGGGAATCAGAGAGCTGCTCAGAACATGGGCAAAAAGTCCCATTCATTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000035113.11 ENSMUST00000215104.2 ENSMUST00000215966.2 |
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| CDS-3UTR TCA 90 bp | ATGGGACTTTTTGCCCATGTTCTGAGCAGCTCTCTGATTCCCAGGAGATGGGTTCTATGTAACACATGCTaGTACTGGACGCACTCGTTC | + |
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Preference number: 4 (lower is better) Translates to: MGLFAHVLSSSLIPRRWVLCNTC*YWTHSF Trigger: GAACGAGTGCGTCCAGTATCAGCATGTGTTACATAG...AACCCATCTCCTGGGAATCAGAGAGCTGCTCAGAACATGGGCAAAAAGTCCCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035113.11 ENSMUST00000215104.2 |
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| CDS-3UTR CCA 90 bp | TCATACACCTCAGGTCCTCGCAGGTCCTCAGGTTCTACCGTGGGATCTGTTTTACTCATTACAGCCTTCTaGAAAACTACTCCACTGCCT | + |
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Preference number: 4 (lower is better) Translates to: SYTSGPRRSSGSTVGSVLLITAF*KTTPLP Trigger: AGGCAGTGGAGTAGTTTTCCAGAAGGCTGTAATGAG...TAAAACAGATCCCACGGTAGAACCTGAGGACCTGCGAGGACCTGAGGTGTATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215833.2 |
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| 3UTR CAA 72 bp | TTGAGACACTTTCCTCTGTCACCAGCTGACAGGGCTTaGTGTGAAACCCTGACTAACTCCAGGTTCTTACCA | + |
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Preference number: 4 (lower is better) Translates to: LRHFPLSPADRA*CETLTNSRFLP Trigger: TGGTAAGAACCTGGAGTTAGTCAGGGTTTCACACAAAGCCCTGTCAGCTGGTGACAGAGGAAAGTGTCTCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215966.2 |
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| CDS-3UTR TCA 90 bp | GGTCCTCGCAGGTCCTCAGGTTCTACCGTGGGATCTGTTTTATTAATAAATATTGCTCGGCCCTTATTCTaGTACTCCACGATACAGCGG | + |
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Preference number: 4 (lower is better) Translates to: GPRRSSGSTVGSVLLINIARPLF*YSTIQR Trigger: CCGCTGTATCGTGGAGTATCAGAATAAGGGCCGAGC...AATATTTATTAATAAAACAGATCCCACGGTAGAACCTGAGGACCTGCGAGGACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035113.11 ENSMUST00000215833.2 |
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| CDS-3UTR GCA 90 bp | ATACACCTCAGGTCCTCGCAGGTCCTCAGGTTCTACCGTGGGATCTGTTTTATTGGAAAACTACTCCACTaGCTTTGTGAGACTGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: IHLRSSQVLRFYRGICFIGKLLH*LCETAC Trigger: ACAAGCAGTCTCACAAAGGCAGTGGAGTAGTTTTCC...AATAAAACAGATCCCACGGTAGAACCTGAGGACCTGCGAGGACCTGAGGTGTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215833.2 |
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| CDS-3UTR TCA 90 bp | GGTCCTCGCAGGTCCTCAGGTTCTACCGTGGGATCTGTTTTATTAATAAATATTCGCTGGATTGTCTCTTaGTTGACCTTGGCTTTGCCG | + |
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Preference number: 4 (lower is better) Translates to: GPRRSSGSTVGSVLLINIRWIVS*LTLALP Trigger: CGGCAAAGCCAAGGTCAATCAAGAGACAATCCAGCG...AATATTTATTAATAAAACAGATCCCACGGTAGAACCTGAGGACCTGCGAGGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035113.11 ENSMUST00000215833.2 |
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| CDS-3UTR GCA 90 bp | ACCTCAGGTCCTCGCAGGTCCTCAGGTTCTACCGTGGGATCTGTTTTATTAATAATGAATGGGACTTTTTaGCCATGTTCTGAGCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: TSGPRRSSGSTVGSVLLIMNGTF*PCSEQL Trigger: GAGCTGCTCAGAACATGGGCAAAAAGTCCCATTCAT...TATTAATAAAACAGATCCCACGGTAGAACCTGAGGACCTGCGAGGACCTGAGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215833.2 |
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| CDS-3UTR TCA 90 bp | TCACAGTCTAAAATGAATGGGACTTTTTGCCCATGTTCTGAGCAGCTCTCTGATGGATTGTCTCTTGATTaGCCTTGGCTTTGCCGCGTA | + |
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Preference number: 4 (lower is better) Translates to: SQSKMNGTFCPCSEQLSDGLSLD*PWLCRV Trigger: TACGCGGCAAAGCCAAGGTCAATCAAGAGACAATCC...ATCAGAGAGCTGCTCAGAACATGGGCAAAAAGTCCCATTCATTTTAGACTGTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000035113.11 ENSMUST00000215966.2 |
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