Pregenerated sensors for SRY (Mus musculus)
Ensembl gene IDs: ENSMUSG00000069036Ensembl transcript IDs: ENSMUST00000091178.2
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
---|---|---|
CDS GCA 90 bp | TGCTGCTTCTGCTGCTGCTGGTGGTGGTGGTCATGGAACTGCTGTTaGTGCTGGGGGTGGTCATGGAACTGCTGCTTCTGCTGGGGGTGG | + |
Preference number: 5 (lower is better) Translates to: CCFCCCWWWWSWNCC*CWGWSWNCCFCWGW Trigger: CCACCCCCAGCAGAAGCAGCAGTTCCATGACCACCCCCAGCAGCAACAGCAGTTCCATGACCACCACCACCAGCAGCAGCAGAAGCAGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS TCA 90 bp | GGGTGGTCATGGAACTGCTGCTTCTGCTGGGGGTGGTCATGGAACTaGTGCTGCTGCTGCTGGTGGTCATGGAACTGCTGCTGCTGCTGC | + |
Preference number: 5 (lower is better) Translates to: GWSWNCCFCWGWSWN*CCCCWWSWNCCCCC Trigger: GCAGCAGCAGCAGCAGTTCCATGACCACCAGCAGCAGCAGCATCAGTTCCATGACCACCCCCAGCAGAAGCAGCAGTTCCATGACCACCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS GCA 90 bp | TGGTGGTGGTCATGGAACTGCTGCTGCTGCTGCTGCTGCTGCTGCTaGTGGTGGTCATGGAACTGCTGTTGCTGCTGGTGGTGGTCATGG | + |
Preference number: 5 (lower is better) Translates to: WWWSWNCCCCCCCCC*WWSWNCCCCWWWSW Trigger: CCATGACCACCACCAGCAGCAACAGCAGTTCCATGACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTCCATGACCACCACCA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS GCA 90 bp | TGCTGGTGGTGGTCATGGAACTGCTGCTGCTGCTGCTGCTGCTGCTaGTGCTGGTGGTCATGGAACTGCTGTTGCTGCTGGTGGTGGTCA | + |
Preference number: 5 (lower is better) Translates to: CWWWSWNCCCCCCCC*CWWSWNCCCCWWWS Trigger: TGACCACCACCAGCAGCAACAGCAGTTCCATGACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTCCATGACCACCACCAGCA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS GCA 90 bp | TTCTGCTGGTGGTGGTCATGGAACTGCTGCTGCTGCTGCTGCTGCTaGTGCTGCTGGTGGTCATGGAACTGCTGTTGCTGCTGGTGGTGG | + |
Preference number: 5 (lower is better) Translates to: FCWWWSWNCCCCCCC*CCWWSWNCCCCWWW Trigger: CCACCACCAGCAGCAACAGCAGTTCCATGACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTCCATGACCACCACCAGCAGAA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS GCA 90 bp | TGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTGCTGCTGCTGCTaGTGCTGCTGCTGGTGGTCATGGAACTGCTGTTGCTGCTGGTGG | + |
Preference number: 5 (lower is better) Translates to: CFCWWWSWNCCCCCC*CCCWWSWNCCCCWW Trigger: CCACCAGCAGCAACAGCAGTTCCATGACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTCCATGACCACCACCAGCAGAAGCA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS CCA 90 bp | TGCTGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTGGTaGTGGTCATGGAACTGCTGCTTCTGCTGCTGCTGGTGGTGGTGG | + |
Preference number: 5 (lower is better) Translates to: CCFCWWWSWNCCFCW*WSWNCCFCCCWWWW Trigger: CCACCACCACCAGCAGCAGCAGAAGCAGCAGTTCCATGACCACCACCAGCAGAAGCAGCAGTTCCATGACCACCACCAGCAGAAGCAGCA 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS GCA 90 bp | TGGTCATGGAACTGCTGTTGCTGCTGGTGGTGGTCATGGAACTGCTaGTCCTGGTGGTGGTGGTGGTGGTCATGGAACTGCTGTTGCTGC | + |
Preference number: 5 (lower is better) Translates to: WSWNCCCCWWWSWNC*SWWWWWWSWNCCCC Trigger: GCAGCAACAGCAGTTCCATGACCACCACCACCACCACCAGGAGCAGCAGTTCCATGACCACCACCAGCAGCAACAGCAGTTCCATGACCA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS CCA 90 bp | TGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTGGTGGTaGTCATGGAACTGCTGCTTCTGCTGCTGCTGGTGGTGGTGGTCA | + |
Preference number: 5 (lower is better) Translates to: CFCWWWSWNCCFCWW*SWNCCFCCCWWWWS Trigger: TGACCACCACCACCAGCAGCAGCAGAAGCAGCAGTTCCATGACCACCACCAGCAGAAGCAGCAGTTCCATGACCACCACCAGCAGAAGCA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS CCA 90 bp | AACTGCTGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTaGTGGTGGTCATGGAACTGCTGCTTCTGCTGCTGCTGGTGGTGG | + |
Preference number: 5 (lower is better) Translates to: NCCFCWWWSWNCCFC*WWSWNCCFCCCWWW Trigger: CCACCACCAGCAGCAGCAGAAGCAGCAGTTCCATGACCACCACCAGCAGAAGCAGCAGTTCCATGACCACCACCAGCAGAAGCAGCAGTT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS CCA 90 bp | TGCTGGTGGTGGTCATGGAACTGCTGTTGCTGCTGGTGGTGGTCATaGAACTGCTGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTC | + |
Preference number: 5 (lower is better) Translates to: CWWWSWNCCCCWWWS*NCCFCWWWSWNCCF Trigger: GAAGCAGCAGTTCCATGACCACCACCAGCAGAAGCAGCAGTTCCATGACCACCACCAGCAGCAACAGCAGTTCCATGACCACCACCAGCA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS GCA 90 bp | CTTTGCTGGTTTTTGGAGTACAGGTGTGCAGCTCTACTCCAGTCTTaGCTGTATGTGATGGCATGTGGGTTCCTGTCCCACTGCAGAAGG | + |
Preference number: 5 (lower is better) Translates to: LCWFLEYRCAALLQS*LYVMACGFLSHCRR Trigger: CCTTCTGCAGTGGGACAGGAACCCACATGCCATCACATACAGGCAAGACTGGAGTAGAGCTGCACACCTGTACTCCAAAAACCAGCAAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS TCA 90 bp | TTTTGGAGTACAGGTGTGCAGCTCTACTCCAGTCTTGCCTGTATGTaGTGGCATGTGGGTTCCTGTCCCACTGCAGAAGGTTGTACAGTT | + |
Preference number: 5 (lower is better) Translates to: FWSTGVQLYSSLACM*WHVGSCPTAEGCTV Trigger: AACTGTACAACCTTCTGCAGTGGGACAGGAACCCACATGCCATCACATACAGGCAAGACTGGAGTAGAGCTGCACACCTGTACTCCAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS GCA 90 bp | AACAGGCTGCCAATAAAAGCTTTGCTGGTTTTTGGAGTACAGGTGTaGAGCTCTACTCCAGTCTTGCCTGTATGTGATGGCATGTGGGTT | + |
Preference number: 5 (lower is better) Translates to: NRLPIKALLVFGVQV*SSTPVLPVCDGMWV Trigger: AACCCACATGCCATCACATACAGGCAAGACTGGAGTAGAGCTGCACACCTGTACTCCAAAAACCAGCAAAGCTTTTATTGGCAGCCTGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS GCA 72 bp | AGCTGCTGGTCGTGGAACTGCTGCTGCTGCTGCTGCTaGTGCTGCTGCTGCTGCTGGTGGTGGTCATGGAAC | + |
Preference number: 6 (lower is better) Translates to: SCWSWNCCCCCC*CCCCCWWWSWN Trigger: GTTCCATGACCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTCCACGACCAGCAGCT 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS CAA 90 bp | CTGCTGCTTCTGCTGCTGCTGGTGGTGGTGGTCATGGAACTGCTGTaGCTGCTGGGGGTGGTCATGGAACTGCTGCTTCTGCTGGGGGTG | + |
Preference number: 6 (lower is better) Translates to: LLLLLLLVVVVMELL*LLGVVMELLLLLGV Trigger: CACCCCCAGCAGAAGCAGCAGTTCCATGACCACCCCCAGCAGCAACAGCAGTTCCATGACCACCACCACCAGCAGCAGCAGAAGCAGCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS GCA 72 bp | TGGAACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTaGAGGTGCCCAGTGGGGATATCAACAGGCTGCCAA | + |
Preference number: 6 (lower is better) Translates to: WNCCCCCCCCCC*RCPVGISTGCQ Trigger: TTGGCAGCCTGTTGATATCCCCACTGGGCACCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS GCA 72 bp | AACTGCTGTTGCTGCTGGTGGTGGTCATGGAACTGCTaGTCCTGGTGGTGGTGGTGGTGGTCATGGAACTGC | + |
Preference number: 6 (lower is better) Translates to: NCCCCWWWSWNC*SWWWWWWSWNC Trigger: GCAGTTCCATGACCACCACCACCACCACCAGGAGCAGCAGTTCCATGACCACCACCAGCAGCAACAGCAGTT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS GCA 72 bp | TGGAACTGCTGTTGCTGCTGGTGGTGGTCATGGAACTaGTGCTCCTGGTGGTGGTGGTGGTGGTCATGGAAC | + |
Preference number: 6 (lower is better) Translates to: WNCCCCWWWSWN*CSWWWWWWSWN Trigger: GTTCCATGACCACCACCACCACCACCAGGAGCAGCAGTTCCATGACCACCACCAGCAGCAACAGCAGTTCCA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS CCA 72 bp | TGGTCATGGAACTGCTGTTGCTGCTGGGGGTGGTCATaGAACTGCTGCTTCTGCTGGGGGTGGTCATGGAAC | + |
Preference number: 6 (lower is better) Translates to: WSWNCCCCWGWS*NCCFCWGWSWN Trigger: GTTCCATGACCACCCCCAGCAGAAGCAGCAGTTCCATGACCACCCCCAGCAGCAACAGCAGTTCCATGACCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS CCA 72 bp | GCTGCTGCTGCTGCTGCTGCTGCTGCAGGTGCCCAGTaGGGATATCAACAGGCTGCCAATAAAAGCTTTGCT | + |
Preference number: 6 (lower is better) Translates to: AAAAAAAAAGAQ*GYQQAANKSFA Trigger: AGCAAAGCTTTTATTGGCAGCCTGTTGATATCCCCACTGGGCACCTGCAGCAGCAGCAGCAGCAGCAGCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS CAA 72 bp | CTCCTGGTGGTGGTGGTGGTGGTCATGGAACTGCTGTaGCTGCTGGTGGTGGTCATGAAACTGCTGCTTCTG | + |
Preference number: 6 (lower is better) Translates to: LLVVVVVVMELL*LLVVVMKLLLL Trigger: CAGAAGCAGCAGTTTCATGACCACCACCAGCAGCAACAGCAGTTCCATGACCACCACCACCACCACCAGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS CCA 72 bp | GAGACTGCCAACCACAGGGCTGTGCTGAGGTGCTCCTaGTATGGTGTATGCTCACCAGTGATGTCAGCTGTT | + |
Preference number: 6 (lower is better) Translates to: ETANHRAVLRCS*YGVCSPVMSAV Trigger: AACAGCTGACATCACTGGTGAGCATACACCATACCAGGAGCACCTCAGCACAGCCCTGTGGTTGGCAGTCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS TCA 72 bp | ACAGGTGTGCAGCTCTACTCCAGTCTTGCCTGTATGTaGTGGCATGTGGGTTCCTGTCCCACTGCAGAAGGT | + |
Preference number: 6 (lower is better) Translates to: TGVQLYSSLACM*WHVGSCPTAEG Trigger: ACCTTCTGCAGTGGGACAGGAACCCACATGCCATCACATACAGGCAAGACTGGAGTAGAGCTGCACACCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS CAA 90 bp | GCTTTGCTGGTTTTTGGAGTACAGGTGTGCAGCTCTACTCCAGTCTaGCCTGTATGTGATGGCATGTGGGTTCCTGTCCCACTGCAGAAG | + |
Preference number: 6 (lower is better) Translates to: ALLVFGVQVCSSTPV*PVCDGMWVPVPLQK Trigger: CTTCTGCAGTGGGACAGGAACCCACATGCCATCACATACAGGCAAGACTGGAGTAGAGCTGCACACCTGTACTCCAAAAACCAGCAAAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS CAA 72 bp | GTGGGTTCCTGTCCCACTGCAGAAGGTTGTACAGTTTaGTTGAGGCAACTGCAGGCTGTAAAATGCCACTCC | + |
Preference number: 6 (lower is better) Translates to: VGSCPTAEGCTV*LRQLQAVKCHS Trigger: GGAGTGGCATTTTACAGCCTGCAGTTGCCTCAACAAAACTGTACAACCTTCTGCAGTGGGACAGGAACCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS CCA 72 bp | AGCTCTACTCCAGTCTTGCCTGTATGTGATGGCATGTaGGTTCCTGTCCCACTGCAGAAGGTTGTACAGTTT | + |
Preference number: 6 (lower is better) Translates to: SSTPVLPVCDGM*VPVPLQKVVQF Trigger: AAACTGTACAACCTTCTGCAGTGGGACAGGAACCCACATGCCATCACATACAGGCAAGACTGGAGTAGAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS CAA 72 bp | GGTTCCTGTCCCACTGCAGAAGGTTGTACAGTTTTGTaGAGGCAACTGCAGGCTGTAAAATGCCACTCCTCT | + |
Preference number: 6 (lower is better) Translates to: GSCPTAEGCTVL*RQLQAVKCHSS Trigger: AGAGGAGTGGCATTTTACAGCCTGCAGTTGCCTCAACAAAACTGTACAACCTTCTGCAGTGGGACAGGAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS CAA 72 bp | GTGATGGCATGTGGGTTCCTGTCCCACTGCAGAAGGTaGTACAGTTTTGTTGAGGCAACTGCAGGCTGTAAA | + |
Preference number: 6 (lower is better) Translates to: VMACGFLSHCRR*YSFVEATAGCK Trigger: TTTACAGCCTGCAGTTGCCTCAACAAAACTGTACAACCTTCTGCAGTGGGACAGGAACCCACATGCCATCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS GCA 72 bp | CCAATAAAAGCTTTGCTGGTTTTTGGAGTACAGGTGTaGAGCTCTACTCCAGTCTTGCCTGTATGTGATGGC | + |
Preference number: 6 (lower is better) Translates to: PIKALLVFGVQV*SSTPVLPVCDG Trigger: GCCATCACATACAGGCAAGACTGGAGTAGAGCTGCACACCTGTACTCCAAAAACCAGCAAAGCTTTTATTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |
||
CDS CCA 72 bp | TATCAACAGGCTGCCAATAAAAGCTTTGCTGGTTTTTaGAGTACAGGTGTGCAGCTCTACTCCAGTCTTGCC | + |
Preference number: 6 (lower is better) Translates to: YQQAANKSFAGF*STGVQLYSSLA Trigger: GGCAAGACTGGAGTAGAGCTGCACACCTGTACTCCAAAAACCAGCAAAGCTTTTATTGGCAGCCTGTTGATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091178.2 |