Pregenerated sensors for SRXN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032802Ensembl transcript IDs: ENSMUST00000041500.8
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGTCTCCGCTCCAGGCCCTCTCACTACTACTCTCTCTTGGAACCCTaGGGCCATCTTGAGAATTCTCCTGAACTGACCTTTGAGAGAGGC | + |
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Preference number: 1 (lower is better) Translates to: SLRSRPSHYYSLLEP*GHLENSPELTFERG Trigger: GCCTCTCTCAAAGGTCAGTTCAGGAGAATTCTCAAGATGGCCTCAGGGTTCCAAGAGAGAGTAGTAGTGAGAGGGCCTGGAGCGGAGACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR GCA 90 bp | CTAACATCTCCCTCTCCCTCTCTTGCTATGGGATCCCAATGGTACTaGAGGCAACACAGTACCAGTCCAGGGGATGAACAAGGCAGTCAC | + |
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Preference number: 1 (lower is better) Translates to: LTSPSPSLAMGSQWY*RQHSTSPGDEQGSH Trigger: GTGACTGCCTTGTTCATCCCCTGGACTGGTACTGTGTTGCCTGCAGTACCATTGGGATCCCATAGCAAGAGAGGGAGAGGGAGATGTTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR TCA 90 bp | AGGGATGACAGTGTTGTGAATCACCATGTAGGTGCTCTTAACAGCTaGGTCTCCGCTCCAGGCCCTCTCACTACTACTCTCTCTTGGAAC | + |
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Preference number: 1 (lower is better) Translates to: RDDSVVNHHVGALNS*VSAPGPLTTTLSWN Trigger: GTTCCAAGAGAGAGTAGTAGTGAGAGGGCCTGGAGCGGAGACTCAGCTGTTAAGAGCACCTACATGGTGATTCACAACACTGTCATCCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR GCA 90 bp | GCAAAAGAAAAGCAATTGGGTGCTTTGCTCGAATGTGTTTGTCTGTaGCCACAGAGCCTAGAAGAGGGCATCAGGTCATCTGGAACAGGG | + |
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Preference number: 1 (lower is better) Translates to: AKEKQLGALLECVCL*PQSLEEGIRSSGTG Trigger: CCCTGTTCCAGATGACCTGATGCCCTCTTCTAGGCTCTGTGGGCACAGACAAACACATTCGAGCAAAGCACCCAATTGCTTTTCTTTTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR CCA 90 bp | TGTTTGTCTGTGCCCACAGAGCCTAGAAGAGGGCATCAGGTCATCTaGAACAGGGATGACAGTGTTGTGAATCACCATGTAGGTGCTCTT | + |
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Preference number: 1 (lower is better) Translates to: CLSVPTEPRRGHQVI*NRDDSVVNHHVGAL Trigger: AAGAGCACCTACATGGTGATTCACAACACTGTCATCCCTGTTCCAGATGACCTGATGCCCTCTTCTAGGCTCTGTGGGCACAGACAAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR CCA 90 bp | TGCATCTTATTCCTTCCAATTTCATTTTCTGGGACACTCGGTGGGTaGGAAAGCTGGTGTCCTCACCATGGAGCTGGGAAAACAGAGGCT | + |
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Preference number: 1 (lower is better) Translates to: CILFLPISFSGTLGG*ESWCPHHGAGKTEA Trigger: AGCCTCTGTTTTCCCAGCTCCATGGTGAGGACACCAGCTTTCCCACCCACCGAGTGTCCCAGAAAATGAAATTGGAAGGAATAAGATGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR TCA 90 bp | CCATCTCCTTTCTTCCTTCCTGGTACTCCTTCAGGGTCAAGGCCATaGTATCTTTCCATAGACAGAAGAACTGAACCCCCTCATTCCTGG | + |
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Preference number: 1 (lower is better) Translates to: PSPFFLPGTPSGSRP*YLSIDRRTEPPHSW Trigger: CCAGGAATGAGGGGGTTCAGTTCTTCTGTCTATGGAAAGATATCATGGCCTTGACCCTGAAGGAGTACCAGGAAGGAAGAAAGGAGATGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR CCA 90 bp | ACGATGCATCTTATTCCTTCCAATTTCATTTTCTGGGACACTCGGTaGGTGGGAAAGCTGGTGTCCTCACCATGGAGCTGGGAAAACAGA | + |
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Preference number: 1 (lower is better) Translates to: TMHLIPSNFIFWDTR*VGKLVSSPWSWENR Trigger: TCTGTTTTCCCAGCTCCATGGTGAGGACACCAGCTTTCCCACCCACCGAGTGTCCCAGAAAATGAAATTGGAAGGAATAAGATGCATCGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR CCA 90 bp | AAAATGAGAGTCCTTGTCTCCAAGTCCATCTCCTTTCTTCCTTCCTaGTACTCCTTCAGGGTCAAGGCCATGATATCTTTCCATAGACAG | + |
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Preference number: 1 (lower is better) Translates to: KMRVLVSKSISFLPS*YSFRVKAMISFHRQ Trigger: CTGTCTATGGAAAGATATCATGGCCTTGACCCTGAAGGAGTACCAGGAAGGAAGAAAGGAGATGGACTTGGAGACAAGGACTCTCATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR GCA 90 bp | TTTGAGAACCGTTACTTAAAGGCTGACATGCCAAGGCCCCTTGTGTaGTTCTGTGACAAACTTATGAAAAGGGAGTACTTATGTGTGGGA | + |
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Preference number: 1 (lower is better) Translates to: FENRYLKADMPRPLV*FCDKLMKREYLCVG Trigger: TCCCACACATAAGTACTCCCTTTTCATAAGTTTGTCACAGAAGCACACAAGGGGCCTTGGCATGTCAGCCTTTAAGTAACGGTTCTCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR-3UTR CCA 90 bp | ACCCCCTCATTCCTGGGAGCTAGCCCCTGGGAGCTAGTGCAGAGGCACCAAGAGGTAGTGGTGCTGATGTaGAGAGGGGCAGGGGGCTAT | + |
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Preference number: 2 (lower is better) Translates to: TPSFLGASPWELVQRHQEVVVLM*RGAGGY Trigger: ATAGCCCCCTGCCCCTCTCCACATCAGCACCACTAC...CTCTTGGTGCCTCTGCACTAGCTCCCAGGGGCTAGCTCCCAGGAATGAGGGGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR-3UTR GCA 90 bp | GAGGCAAATCTCCGTGAGGTCAAGGCCAGCCTGGTACTGCACAGTGAGTTCCAGCTGCCCACTGGGGGCTaGATGTGTCTTCTGAGCGCC | + |
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Preference number: 2 (lower is better) Translates to: EANLREVKASLVLHSEFQLPTGG*MCLLSA Trigger: GGCGCTCAGAAGACACATGCAGCCCCCAGTGGGCAG...CTGGAACTCACTGTGCAGTACCAGGCTGGCCTTGACCTCACGGAGATTTGCCTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR-3UTR GCA 90 bp | CCAACACTTGCCACAATGGTGAAGGTGACCCCAGCCCAACCAGCCCCAGCTGAGCCCATCTACAGCTTCTaGCCACTGGGGGCTGCATGT | + |
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Preference number: 2 (lower is better) Translates to: PTLATMVKVTPAQPAPAEPIYSF*PLGAAC Trigger: ACATGCAGCCCCCAGTGGGCAGAAGCTGTAGATGGG...CTCAGCTGGGGCTGGTTGGGCTGGGGTCACCTTCACCATTGTGGCAAGTGTTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR-3UTR TCA 90 bp | TCTGTGCCCACAGAGCCTAGAAGAGGGCATCAGGTCATCTGGAACAGGGATGACCTTTGCAGCTGTGGGTaGCAATGGTGGCTAGCTCAG | + |
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Preference number: 2 (lower is better) Translates to: SVPTEPRRGHQVIWNRDDLCSCG*QWWLAQ Trigger: CTGAGCTAGCCACCATTGTCACCCACAGCTGCAAAG...GTCATCCCTGTTCCAGATGACCTGATGCCCTCTTCTAGGCTCTGTGGGCACAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR-3UTR TCA 90 bp | CCTTCCAATTTCATTTTCTGGGACACTCGGTGGGTGGGAAAGCTGGTGTCCTCATGTGGTTCCTCCCGCTaGGAGCTCGGTCCATTTGCA | + |
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Preference number: 2 (lower is better) Translates to: PSNFIFWDTRWVGKLVSSCGSSR*ELGPFA Trigger: TGCAAATGGACCGAGCTCTCAGCGGGAGGAACCACA...TGAGGACACCAGCTTTCCCACCCACCGAGTGTCCCAGAAAATGAAATTGGAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR-3UTR CCA 90 bp | TCTCCCTCTCCCTCTCTTGCTATGGGATCCCAATGGTACTGCAGGCAACACAGTACAGCTTCTGCCCACTaGGGGCTGCATGTGTCTTCT | + |
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Preference number: 2 (lower is better) Translates to: SPSPSLAMGSQWYCRQHSTASAH*GLHVSS Trigger: AGAAGACACATGCAGCCCCCAGTGGGCAGAAGCTGT...ACTGTGTTGCCTGCAGTACCATTGGGATCCCATAGCAAGAGAGGGAGAGGGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR-3UTR CCA 90 bp | GAGGCAAATCTCCGTGAGGTCAAGGCCAGCCTGGTACTGCACAGTGAGTTCCAGCCAGAGTTCAGGCTATaGGGATGGATAACCAGCTTC | + |
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Preference number: 2 (lower is better) Translates to: EANLREVKASLVLHSEFQPEFRL*GWITSF Trigger: GAAGCTGGTTATCCATCCCCATAGCCTGAACTCTGG...CTGGAACTCACTGTGCAGTACCAGGCTGGCCTTGACCTCACGGAGATTTGCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR-3UTR GCA 90 bp | TCTGTGCCCACAGAGCCTAGAAGAGGGCATCAGGTCATCTGGAACAGGGATGACAATGCAGCCAACACTTaGCACAATGGTGAAGGTGAC | + |
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Preference number: 2 (lower is better) Translates to: SVPTEPRRGHQVIWNRDDNAANT*HNGEGD Trigger: GTCACCTTCACCATTGTGGCAAGTGTTGGCTGCATT...GTCATCCCTGTTCCAGATGACCTGATGCCCTCTTCTAGGCTCTGTGGGCACAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR-3UTR TCA 90 bp | CATCCAGCCCACCCCAGAGATAAGATTACCCAAACTGGAAGGTATGAGTCCTGGTCACTGAAGCCATGGTaGCCTGGGTTTTCCTTTACT | + |
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Preference number: 2 (lower is better) Translates to: HPAHPRDKITQTGRYESWSLKPW*PGFSFT Trigger: AGTAAAGGAAAACCCAGGTCACCATGGCTTCAGTGA...CCAGGACTCATACCTTCCAGTTTGGGTAATCTTATCTCTGGGGTGGGCTGGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR-3UTR TCA 90 bp | TCCCATACATTCTTCATCCAGCCCACCCCAGAGATAAGATTACCCAAACTGGAAACCTCATTGTGCCTCTaGGACATCCTTAGGGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: SHTFFIQPTPEIRLPKLETSLCL*DILRAG Trigger: CCCAGCCCTAAGGATGTCTCAGAGGCACAATGAGGT...TTCCAGTTTGGGTAATCTTATCTCTGGGGTGGGCTGGATGAAGAATGTATGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR-3UTR TCA 90 bp | TCCCATACATTCTTCATCCAGCCCACCCCAGAGATAAGATTACCCAAACTGGAATACCAGTCCAGGGGATaGACAAGGCAGTCACACTCA | + |
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Preference number: 2 (lower is better) Translates to: SHTFFIQPTPEIRLPKLEYQSRG*TRQSHS Trigger: TGAGTGTGACTGCCTTGTTCATCCCCTGGACTGGTA...TTCCAGTTTGGGTAATCTTATCTCTGGGGTGGGCTGGATGAAGAATGTATGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR-3UTR CCA 90 bp | TCCCATACATTCTTCATCCAGCCCACCCCAGAGATAAGATTACCCAAACTGGAATCCAATTTCATTTTCTaGGACACTCGGTGGGTGGGA | + |
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Preference number: 2 (lower is better) Translates to: SHTFFIQPTPEIRLPKLESNFIF*DTRWVG Trigger: TCCCACCCACCGAGTGTCCCAGAAAATGAAATTGGA...TTCCAGTTTGGGTAATCTTATCTCTGGGGTGGGCTGGATGAAGAATGTATGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR-3UTR TCA 90 bp | TCCCATACATTCTTCATCCAGCCCACCCCAGAGATAAGATTACCCAAACTGGAAAGAATTCTCCTGAACTaGCCTTTGAGAGAGGCAACA | + |
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Preference number: 2 (lower is better) Translates to: SHTFFIQPTPEIRLPKLERILLN*PLREAT Trigger: TGTTGCCTCTCTCAAAGGTCAGTTCAGGAGAATTCT...TTCCAGTTTGGGTAATCTTATCTCTGGGGTGGGCTGGATGAAGAATGTATGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR-3UTR TCA 90 bp | CAAAGGCTAACTAACATCTCCCTCTCCCTCTCTTGCTATGGGATCCCAATGGTACAAAGAACAGGGTCCTaGAACTTTGAACAAGGTTTT | + |
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Preference number: 2 (lower is better) Translates to: QRLTNISLSLSCYGIPMVQRTGS*NFEQGF Trigger: AAAACCTTGTTCAAAGTTTCAGGACCCTGTTCTTTG...TACCATTGGGATCCCATAGCAAGAGAGGGAGAGGGAGATGTTAGTTAGCCTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR-3UTR GCA 90 bp | CAAACTTATGAAAAGGGAGTACTTATGTGTGGGAGTGAGGAATTCTGTCTCTTGGTGTTTCCTAAGGTCTaGTTTCTTTGCAGCTGTGGG | + |
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Preference number: 2 (lower is better) Translates to: QTYEKGVLMCGSEEFCLLVFPKV*FLCSCG Trigger: CCCACAGCTGCAAAGAAAGCAGACCTTAGGAAACAC...CAAGAGACAGAATTCCTCACTCCCACACATAAGTACTCCCTTTTCATAAGTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR TCA 72 bp | TACAGCTTCTGCCCACTGGGGGCTGCATGTGTCTTCTaGGCGCCGGGTAGTGGTGCTGATGTGGAGAGGGGC | + |
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Preference number: 3 (lower is better) Translates to: YSFCPLGAACVF*APGSGADVERG Trigger: GCCCCTCTCCACATCAGCACCACTACCCGGCGCTCAGAAGACACATGCAGCCCCCAGTGGGCAGAAGCTGTA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR CCA 72 bp | ACATCTCCCTCTCCCTCTCTTGCTATGGGATCCCAATaGTACTGCAGGCAACACAGTACCAGTCCAGGGGAT | + |
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Preference number: 3 (lower is better) Translates to: TSPSPSLAMGSQ*YCRQHSTSPGD Trigger: ATCCCCTGGACTGGTACTGTGTTGCCTGCAGTACCATTGGGATCCCATAGCAAGAGAGGGAGAGGGAGATGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR CCA 72 bp | GTCTCCGCTCCAGGCCCTCTCACTACTACTCTCTCTTaGAACCCTGAGGCCATCTTGAGAATTCTCCTGAAC | + |
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Preference number: 3 (lower is better) Translates to: VSAPGPLTTTLS*NPEAILRILLN Trigger: GTTCAGGAGAATTCTCAAGATGGCCTCAGGGTTCCAAGAGAGAGTAGTAGTGAGAGGGCCTGGAGCGGAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR TCA 72 bp | GTCAAGGCCATGATATCTTTCCATAGACAGAAGAACTaGACCCCCTCATTCCTGGGAGCTAGCCCCTGGGAG | + |
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Preference number: 3 (lower is better) Translates to: VKAMISFHRQKN*TPSFLGASPWE Trigger: CTCCCAGGGGCTAGCTCCCAGGAATGAGGGGGTTCAGTTCTTCTGTCTATGGAAAGATATCATGGCCTTGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR CCA 72 bp | ATTTCATTTTCTGGGACACTCGGTGGGTGGGAAAGCTaGTGTCCTCACCATGGAGCTGGGAAAACAGAGGCT | + |
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Preference number: 3 (lower is better) Translates to: ISFSGTLGGWES*CPHHGAGKTEA Trigger: AGCCTCTGTTTTCCCAGCTCCATGGTGAGGACACCAGCTTTCCCACCCACCGAGTGTCCCAGAAAATGAAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR-3UTR CAA 90 bp | GAGGCAAATCTCCGTGAGGTCAAGGCCAGCCTGGTACTGCACAGTGAGTTCCAGCAGGGTCCTGAAACTTaGAACAAGGTTTTCCTTTCT | + |
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Preference number: 3 (lower is better) Translates to: EANLREVKASLVLHSEFQQGPET*NKVFLS Trigger: AGAAAGGAAAACCTTGTTCAAAGTTTCAGGACCCTG...CTGGAACTCACTGTGCAGTACCAGGCTGGCCTTGACCTCACGGAGATTTGCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR TCA 72 bp | GACTCCCGAGAGGAAGCCCTGCCTTCACTGAGCTGTTaGCACAATACTGTGTTAGTCAGTGCTGTGTTAGCT | + |
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Preference number: 3 (lower is better) Translates to: DSREEALPSLSC*HNTVLVSAVLA Trigger: AGCTAACACAGCACTGACTAACACAGTATTGTGTCAACAGCTCAGTGAAGGCAGGGCTTCCTCTCGGGAGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR TCA 72 bp | GTGTTTCCTAAGGTCTGCTTTCTTTGCAGCTGTGGGTaGCAATGGTGGCTAGCTCAGACCAAGGTGACCATG | + |
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Preference number: 3 (lower is better) Translates to: VFPKVCFLCSCG*QWWLAQTKVTM Trigger: CATGGTCACCTTGGTCTGAGCTAGCCACCATTGTCACCCACAGCTGCAAAGAAAGCAGACCTTAGGAAACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR CCA 72 bp | GTGCCCACAGAGCCTAGAAGAGGGCATCAGGTCATCTaGAACAGGGATGACAGTGTTGTGAATCACCATGTA | + |
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Preference number: 3 (lower is better) Translates to: VPTEPRRGHQVI*NRDDSVVNHHV Trigger: TACATGGTGATTCACAACACTGTCATCCCTGTTCCAGATGACCTGATGCCCTCTTCTAGGCTCTGTGGGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR CCA 72 bp | TTCCTTCCAATTTCATTTTCTGGGACACTCGGTGGGTaGGAAAGCTGGTGTCCTCACCATGGAGCTGGGAAA | + |
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Preference number: 3 (lower is better) Translates to: FLPISFSGTLGG*ESWCPHHGAGK Trigger: TTTCCCAGCTCCATGGTGAGGACACCAGCTTTCCCACCCACCGAGTGTCCCAGAAAATGAAATTGGAAGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR TCA 72 bp | TCCAGGCCCTCTCACTACTACTCTCTCTTGGAACCCTaGGGCCATCTTGAGAATTCTCCTGAACTGACCTTT | + |
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Preference number: 3 (lower is better) Translates to: SRPSHYYSLLEP*GHLENSPELTF Trigger: AAAGGTCAGTTCAGGAGAATTCTCAAGATGGCCTCAGGGTTCCAAGAGAGAGTAGTAGTGAGAGGGCCTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR GCA 72 bp | AAGCAATTGGGTGCTTTGCTCGAATGTGTTTGTCTGTaGCCACAGAGCCTAGAAGAGGGCATCAGGTCATCT | + |
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Preference number: 3 (lower is better) Translates to: KQLGALLECVCL*PQSLEEGIRSS Trigger: AGATGACCTGATGCCCTCTTCTAGGCTCTGTGGGCACAGACAAACACATTCGAGCAAAGCACCCAATTGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR-3UTR CAA 90 bp | TATTCCTTCCAATTTCATTTTCTGGGACACTCGGTGGGTGGGAAAGCTGGTGTCATAGCCCAATGTTCTTaGTGGTTCCTCCCGCTGAGA | + |
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Preference number: 3 (lower is better) Translates to: YSFQFHFLGHSVGGKAGVIAQCS*WFLPLR Trigger: TCTCAGCGGGAGGAACCACAAAGAACATTGGGCTAT...GACACCAGCTTTCCCACCCACCGAGTGTCCCAGAAAATGAAATTGGAAGGAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR TCA 72 bp | TTCAGGCTATGGGGATGGATAACCAGCTTCTCTCACTaGAGCCATGGTGACCTGGGTTTTCCTTTACTTCCT | + |
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Preference number: 3 (lower is better) Translates to: FRLWGWITSFSH*SHGDLGFPLLP Trigger: AGGAAGTAAAGGAAAACCCAGGTCACCATGGCTTCAGTGAGAGAAGCTGGTTATCCATCCCCATAGCCTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR TCA 72 bp | TTCTTCCTTCCTGGTACTCCTTCAGGGTCAAGGCCATaGTATCTTTCCATAGACAGAAGAACTGAACCCCCT | + |
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Preference number: 3 (lower is better) Translates to: FFLPGTPSGSRP*YLSIDRRTEPP Trigger: AGGGGGTTCAGTTCTTCTGTCTATGGAAAGATATCATGGCCTTGACCCTGAAGGAGTACCAGGAAGGAAGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR GCA 72 bp | TTCACTGAGCTGTTGACACAATACTGTGTTAGTCAGTaGTGTGTTAGCTGCCGGTTCCAGAGTTCAGGCTAT | + |
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Preference number: 3 (lower is better) Translates to: FTELLTQYCVSQ*CVSCRFQSSGY Trigger: ATAGCCTGAACTCTGGAACCGGCAGCTAACACAGCACTGACTAACACAGTATTGTGTCAACAGCTCAGTGAA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR GCA 72 bp | CGTTACTTAAAGGCTGACATGCCAAGGCCCCTTGTGTaGTTCTGTGACAAACTTATGAAAAGGGAGTACTTA | + |
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Preference number: 3 (lower is better) Translates to: RYLKADMPRPLV*FCDKLMKREYL Trigger: TAAGTACTCCCTTTTCATAAGTTTGTCACAGAAGCACACAAGGGGCCTTGGCATGTCAGCCTTTAAGTAACG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR TCA 72 bp | ATAAGATTACCCAAACTGGAAGGTATGAGTCCTGGTTaGCCTGCTAATGTGCTTTCTCTCCCTAGTCTCTTT | + |
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Preference number: 3 (lower is better) Translates to: IRLPKLEGMSPG*PANVLSLPSLF Trigger: AAAGAGACTAGGGAGAGAAAGCACATTAGCAGGTCAACCAGGACTCATACCTTCCAGTTTGGGTAATCTTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR GCA 72 bp | CTCTTTTTGGTCCCAAGAATCAATCCAGCACCACGATaGATCTTATTCCTTCCAATTTCATTTTCTGGGACA | + |
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Preference number: 3 (lower is better) Translates to: LFLVPRINPAPR*ILFLPISFSGT Trigger: TGTCCCAGAAAATGAAATTGGAAGGAATAAGATGCATCGTGGTGCTGGATTGATTCTTGGGACCAAAAAGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR-3UTR CAA 90 bp | CAAACTTATGAAAAGGGAGTACTTATGTGTGGGAGTGAGGAATTCTGTCTCTTGGCAAAAGAAAAGCAATaGGGTGCTTTGCTCGAATGT | + |
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Preference number: 3 (lower is better) Translates to: QTYEKGVLMCGSEEFCLLAKEKQ*GALLEC Trigger: ACATTCGAGCAAAGCACCCAATTGCTTTTCTTTTGC...CAAGAGACAGAATTCCTCACTCCCACACATAAGTACTCCCTTTTCATAAGTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| CDS-3UTR GCA 90 bp | GAGGCAAATCTCCGTGAGGTCAAGGCCAGCCTGGTACTGCACAGTGAGTTCCAGTGTGCACCGTGGCGATaGAGCCCGAGTGGATGCTGC | + |
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Preference number: 4 (lower is better) Translates to: EANLREVKASLVLHSEFQCAPWR*SPSGCC Trigger: GCAGCATCCACTCGGGCTGCATCGCCACGGTGCACA...CTGGAACTCACTGTGCAGTACCAGGCTGGCCTTGACCTCACGGAGATTTGCCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| CDS-3UTR CCA 90 bp | GAGGCAAATCTCCGTGAGGTCAAGGCCAGCCTGGTACTGCACAGTGAGTTCCAGGTACGTTGTGCACCGTaGCGATGCAGCCCGAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: EANLREVKASLVLHSEFQVRCAP*RCSPSG Trigger: TCCACTCGGGCTGCATCGCCACGGTGCACAACGTAC...CTGGAACTCACTGTGCAGTACCAGGCTGGCCTTGACCTCACGGAGATTTGCCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| CDS-3UTR CCA 90 bp | TTTGCTCGAATGTGTTTGTCTGTGCCCACAGAGCCTAGAAGAGGGCATCAGGTCCGAGCTTGGCAGGAATaGTCTCTCTCTGCAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: FARMCLSVPTEPRRGHQVRAWQE*SLSAAA Trigger: AGCAGCTGCAGAGAGAGACCATTCCTGCCAAGCTCG...GACCTGATGCCCTCTTCTAGGCTCTGTGGGCACAGACAAACACATTCGAGCAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR CAA 72 bp | GGACTCCCGAGAGGAAGCCCTGCCTTCACTGAGCTGTaGACACAATACTGTGTTAGTCAGTGCTGTGTTAGC | + |
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Preference number: 4 (lower is better) Translates to: GLPRGSPAFTEL*TQYCVSQCCVS Trigger: GCTAACACAGCACTGACTAACACAGTATTGTGTCAACAGCTCAGTGAAGGCAGGGCTTCCTCTCGGGAGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR CAA 72 bp | TTCTTTGTGGTTCCTCCCGCTGAGAGCTCGGTCCATTaGCAACCCTTGAATCTAAGGAACGAACTGACCAAC | + |
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Preference number: 4 (lower is better) Translates to: FFVVPPAESSVH*QPLNLRNELTN Trigger: GTTGGTCAGTTCGTTCCTTAGATTCAAGGGTTGCAAATGGACCGAGCTCTCAGCGGGAGGAACCACAAAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR CAA 72 bp | AAAAGAAAAGCAATTGGGTGCTTTGCTCGAATGTGTTaGTCTGTGCCCACAGAGCCTAGAAGAGGGCATCAG | + |
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Preference number: 4 (lower is better) Translates to: KRKAIGCFARMC*SVPTEPRRGHQ Trigger: CTGATGCCCTCTTCTAGGCTCTGTGGGCACAGACAAACACATTCGAGCAAAGCACCCAATTGCTTTTCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| 3UTR CAA 72 bp | AATCTAAGGAACGAACTGACCAACAGAAACACATTCTaGGCACAGGGGCTGAAGAAACCTTGTCACCTTAAA | + |
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Preference number: 4 (lower is better) Translates to: NLRNELTNRNTF*AQGLKKPCHLK Trigger: TTTAAGGTGACAAGGTTTCTTCAGCCCCTGTGCCAAGAATGTGTTTCTGTTGGTCAGTTCGTTCCTTAGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| CDS GCA 90 bp | CGATTGGTACGTTGTGCACCGTGGCGATGCAGCCCGAGTGGATGCTaGCGCCCTGGGCGCCACCGGGTCCCTGTCCCTCGGGCGCCCCGG | + |
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Preference number: 5 (lower is better) Translates to: RLVRCAPWRCSPSGC*RPGRHRVPVPRAPR Trigger: CCGGGGCGCCCGAGGGACAGGGACCCGGTGGCGCCCAGGGCGGCAGCATCCACTCGGGCTGCATCGCCACGGTGCACAACGTACCAATCG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| CDS CCA 90 bp | GCCCTCCGGAGCGCTCCACCCGCGCGTAGCCCCATACCTCTTCCTTaGTGGCCAGTGCCGCCCGGCCTCTTTACCAGGCCGGGCTGTACC | + |
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Preference number: 5 (lower is better) Translates to: ALRSAPPARSPIPLP*WPVPPGLFTRPGCT Trigger: GGTACAGCCCGGCCTGGTAAAGAGGCCGGGCGGCACTGGCCACCAAGGAAGAGGTATGGGGCTACGCGCGGGTGGAGCGCTCCGGAGGGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| CDS CCA 90 bp | AGCACGGCGATTGGTACGTTGTGCACCGTGGCGATGCAGCCCGAGTaGATGCTGCCGCCCTGGGCGCCACCGGGTCCCTGTCCCTCGGGC | + |
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Preference number: 5 (lower is better) Translates to: STAIGTLCTVAMQPE*MLPPWAPPGPCPSG Trigger: GCCCGAGGGACAGGGACCCGGTGGCGCCCAGGGCGGCAGCATCCACTCGGGCTGCATCGCCACGGTGCACAACGTACCAATCGCCGTGCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| CDS GCA 90 bp | AGCACGGACGGCAGCGGCCGGATGAGCACGGCGATTGGTACGTTGTaGACCGTGGCGATGCAGCCCGAGTGGATGCTGCCGCCCTGGGCG | + |
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Preference number: 5 (lower is better) Translates to: STDGSGRMSTAIGTL*TVAMQPEWMLPPWA Trigger: CGCCCAGGGCGGCAGCATCCACTCGGGCTGCATCGCCACGGTGCACAACGTACCAATCGCCGTGCTCATCCGGCCGCTGCCGTCCGTGCT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| CDS GCA 72 bp | CGTTGTGCACCGTGGCGATGCAGCCCGAGTGGATGCTaGCGCCCTGGGCGCCACCGGGTCCCTGTCCCTCGG | + |
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Preference number: 6 (lower is better) Translates to: RCAPWRCSPSGC*RPGRHRVPVPR Trigger: CCGAGGGACAGGGACCCGGTGGCGCCCAGGGCGGCAGCATCCACTCGGGCTGCATCGCCACGGTGCACAACG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| CDS GCA 72 bp | CCGCGCGTAGCCCCATACCTCTTCCTTGGTGGCCAGTaGCGCCCGGCCTCTTTACCAGGCCGGGCTGTACCA | + |
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Preference number: 6 (lower is better) Translates to: PRVAPYLFLGGQ*RPASLPGRAVP Trigger: TGGTACAGCCCGGCCTGGTAAAGAGGCCGGGCGGCACTGGCCACCAAGGAAGAGGTATGGGGCTACGCGCGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| CDS GCA 72 bp | GGCAGCGGCCGGATGAGCACGGCGATTGGTACGTTGTaGACCGTGGCGATGCAGCCCGAGTGGATGCTGCCG | + |
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Preference number: 6 (lower is better) Translates to: GSGRMSTAIGTL*TVAMQPEWMLP Trigger: CGGCAGCATCCACTCGGGCTGCATCGCCACGGTGCACAACGTACCAATCGCCGTGCTCATCCGGCCGCTGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| CDS CCA 72 bp | ATTGGTACGTTGTGCACCGTGGCGATGCAGCCCGAGTaGATGCTGCCGCCCTGGGCGCCACCGGGTCCCTGT | + |
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Preference number: 6 (lower is better) Translates to: IGTLCTVAMQPE*MLPPWAPPGPC Trigger: ACAGGGACCCGGTGGCGCCCAGGGCGGCAGCATCCACTCGGGCTGCATCGCCACGGTGCACAACGTACCAAT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| CDS CCA 72 bp | CAGCACGGACGGCAGCGGCCGGATGAGCACGGCGATTaGTACGTTGTGCACCGTGGCGATGCAGCCCGAGTG | + |
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Preference number: 6 (lower is better) Translates to: QHGRQRPDEHGD*YVVHRGDAARV Trigger: CACTCGGGCTGCATCGCCACGGTGCACAACGTACCAATCGCCGTGCTCATCCGGCCGCTGCCGTCCGTGCTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| CDS CAA 72 bp | GACGGCAGCGGCCGGATGAGCACGGCGATTGGTACGTaGTGCACCGTGGCGATGCAGCCCGAGTGGATGCTG | + |
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Preference number: 6 (lower is better) Translates to: DGSGRMSTAIGT*CTVAMQPEWML Trigger: CAGCATCCACTCGGGCTGCATCGCCACGGTGCACAACGTACCAATCGCCGTGCTCATCCGGCCGCTGCCGTC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| CDS CCA 72 bp | ACATCCTCAGGTCTGAAAGGGTGGACCTCACGAGCTTaGCAGGAATGGTCTCTCTCTGCAGCTGCTGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: TSSGLKGWTSRA*QEWSLSAAAGR Trigger: CCTACCAGCAGCTGCAGAGAGAGACCATTCCTGCCAAGCTCGTGAGGTCCACCCTTTCAGACCTGAGGATGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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| CDS CCA 72 bp | TGGATGCTCCCAGGTACATCCTCAGGTCTGAAAGGGTaGACCTCACGAGCTTGGCAGGAATGGTCTCTCTCT | + |
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Preference number: 6 (lower is better) Translates to: WMLPGTSSGLKG*TSRAWQEWSLS Trigger: AGAGAGAGACCATTCCTGCCAAGCTCGTGAGGTCCACCCTTTCAGACCTGAGGATGTACCTGGGAGCATCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041500.8 |
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