Pregenerated sensors for SRSY (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096819Ensembl transcript IDs: ENSMUST00000179900.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGTCTCTCCAAGGACAGGAGAGAGCAGGTACCACATCCTCTGCTTaGGATATTGTATGTCTGTCATATCTTCGCATAACAGGGAATGTT | + |
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Preference number: 1 (lower is better) Translates to: GSLQGQERAGTTSSA*DIVCLSYLRITGNV Trigger: AACATTCCCTGTTATGCGAAGATATGACAGACATACAATATCTCAAGCAGAGGATGTGGTACCTGCTCTCTCCTGTCCTTGGAGAGACCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| 3UTR-3UTR CCA 90 bp | ATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTACCACATCCTCTGCTTGAGATATTCCAAAAGGGAATGTaGTACTCCCTTTTGGAGGTA | + |
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Preference number: 2 (lower is better) Translates to: MGLSKDRREQVPHPLLEIFQKGM*YSLLEV Trigger: TACCTCCAAAAGGGAGTACCACATTCCCTTTTGGAA...TATCTCAAGCAGAGGATGTGGTACCTGCTCTCTCCTGTCCTTGGAGAGACCCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| 3UTR CAA 90 bp | TGGGTCTCTCCAAGGACAGGAGAGAGCAGGTACCACATCCTCTGCTaGAGATATTGTATGTCTGTCATATCTTCGCATAACAGGGAATGT | + |
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Preference number: 2 (lower is better) Translates to: WVSPRTGESRYHILC*RYCMSVISSHNREC Trigger: ACATTCCCTGTTATGCGAAGATATGACAGACATACAATATCTCAAGCAGAGGATGTGGTACCTGCTCTCTCCTGTCCTTGGAGAGACCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| 3UTR TCA 72 bp | CATTTGAGGGGCCACCTATTTCAGCCTGAAGCATTCTaGGCCTTTCTGAAACAGGGATCACAAAGCATGTGT | + |
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Preference number: 3 (lower is better) Translates to: HLRGHLFQPEAF*AFLKQGSQSMC Trigger: ACACATGCTTTGTGATCCCTGTTTCAGAAAGGCTCAGAATGCTTCAGGCTGAAATAGGTGGCCCCTCAAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| 3UTR TCA 72 bp | TTAGATGGAGCATTTGAGGGGCCACCTATTTCAGCCTaGAGCATTCTGAGCCTTTCTGAAACAGGGATCACA | + |
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Preference number: 3 (lower is better) Translates to: LDGAFEGPPISA*SILSLSETGIT Trigger: TGTGATCCCTGTTTCAGAAAGGCTCAGAATGCTTCAGGCTGAAATAGGTGGCCCCTCAAATGCTCCATCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| 3UTR TCA 72 bp | TCTGAAACAGGGATCACAAAGCATGTGTCCCTTTGGTaGGAACTGGAAAGTCTGAGTCCACATTGGTCTGAT | + |
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Preference number: 3 (lower is better) Translates to: SETGITKHVSLW*ELESLSPHWSD Trigger: ATCAGACCAATGTGGACTCAGACTTTCCAGTTCTCACCAAAGGGACACATGCTTTGTGATCCCTGTTTCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| 3UTR GCA 72 bp | TCTCCAAGGACAGGAGAGAGCAGGTACCACATCCTCTaGTTGAGATATTGTATGTCTGTCATATCTTCGCAT | + |
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Preference number: 3 (lower is better) Translates to: SPRTGESRYHIL*LRYCMSVISSH Trigger: ATGCGAAGATATGACAGACATACAATATCTCAAGCAGAGGATGTGGTACCTGCTCTCTCCTGTCCTTGGAGA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| 3UTR TCA 72 bp | TTTTGCAGTGCGATCCTGTTGAGATTGATTTTCAAATaGTGTGTATATTTGTGGCCTCCTAGGACAGAATGG | + |
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Preference number: 3 (lower is better) Translates to: FCSAILLRLIFK*CVYLWPPRTEW Trigger: CCATTCTGTCCTAGGAGGCCACAAATATACACATCATTTGAAAATCAATCTCAACAGGATCGCACTGCAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR TCA 90 bp | GTAATGATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTACCACATCCTCTGCTTTTGGTAGGGGACTTCTaGGGCCCACCTCATGAGATG | + |
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Preference number: 4 (lower is better) Translates to: VMMGLSKDRREQVPHPLLLVGDF*GPPHEM Trigger: CATCTCATGAGGTGGGCCTCAGAAGTCCCCTACCAA...AAGCAGAGGATGTGGTACCTGCTCTCTCCTGTCCTTGGAGAGACCCATCATTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR GCA 90 bp | ATGATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTACCACATCCTCTGCTTGAGTCTGTAGGGGAAGTTTaGAGGGCTCCTTGGGAAACA | + |
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Preference number: 4 (lower is better) Translates to: MMGLSKDRREQVPHPLLESVGEV*RAPWET Trigger: TGTTTCCCAAGGAGCCCTGCAAACTTCCCCTACAGA...CTCAAGCAGAGGATGTGGTACCTGCTCTCTCCTGTCCTTGGAGAGACCCATCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR CCA 90 bp | GTAATGATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTACCACATCCTCTGCTTGTTTGCAGGGCTCCTTaGGAAACAGAGGCTTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: VMMGLSKDRREQVPHPLLVCRAP*ETEAFL Trigger: GAGGAAAGCCTCTGTTTCCCAAGGAGCCCTGCAAAC...AAGCAGAGGATGTGGTACCTGCTCTCTCCTGTCCTTGGAGAGACCCATCATTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR TCA 90 bp | GTAATGATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTACCACATCCTCTGCTTGACTTAGATGGTCTGTaGATGCCTTGGCTTGGTAGG | + |
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Preference number: 4 (lower is better) Translates to: VMMGLSKDRREQVPHPLLDLDGL*MPWLGR Trigger: CCTACCAAGCCAAGGCATTCACAGACCATCTAAGTC...AAGCAGAGGATGTGGTACCTGCTCTCTCCTGTCCTTGGAGAGACCCATCATTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR TCA 90 bp | TGTAATGATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTACCACATCCTCTGCTGGAAGGTGTGATGCCTaGGGCTGTCTTCATGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: CNDGSLQGQERAGTTSSAGRCDA*GCLHEK Trigger: TTTCTCATGAAGACAGCCTCAGGCATCACACCTTCC...AGCAGAGGATGTGGTACCTGCTCTCTCCTGTCCTTGGAGAGACCCATCATTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR CCA 90 bp | TGTAATGATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTACCACATCCTCTGCTTGTTGCACACCTCTATaGGGACTGTCTCCATCTGGA | + |
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Preference number: 4 (lower is better) Translates to: CNDGSLQGQERAGTTSSACCTPL*GLSPSG Trigger: TCCAGATGGAGACAGTCCCCATAGAGGTGTGCAACA...AGCAGAGGATGTGGTACCTGCTCTCTCCTGTCCTTGGAGAGACCCATCATTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR CCA 90 bp | TGTAATGATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTACCACATCCTCTGCTCCCGTTTTGCACTTCTaGAAGTTGTCTCTCCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: CNDGSLQGQERAGTTSSAPVLHF*KLSLPL Trigger: AAGAGGGAGAGACAACTTCCAGAAGTGCAAAACGGG...AGCAGAGGATGTGGTACCTGCTCTCTCCTGTCCTTGGAGAGACCCATCATTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR TCA 90 bp | TGTAATGATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTACCACATCCTCTGCTGTCTCCATCTGGAGATaGCTCAATGCATTCTTGATC | + |
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Preference number: 4 (lower is better) Translates to: CNDGSLQGQERAGTTSSAVSIWR*LNAFLI Trigger: GATCAAGAATGCATTGAGTCATCTCCAGATGGAGAC...AGCAGAGGATGTGGTACCTGCTCTCTCCTGTCCTTGGAGAGACCCATCATTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR GCA 90 bp | GTAATGATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTACCACATCCTCTGCTTGGCTTGTCAACCTCATaGTCTGAATTGGAAGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: VMMGLSKDRREQVPHPLLGLSTS*SELEAL Trigger: CAAAGCTTCCAATTCAGAGCATGAGGTTGACAAGCC...AAGCAGAGGATGTGGTACCTGCTCTCTCCTGTCCTTGGAGAGACCCATCATTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR TCA 90 bp | AACCCAAATTCATATTGTAATGATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTCACCTCATGAGATGGTaGGCATCTGCAGGCTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: NPNSYCNDGSLQGQERAGHLMRW*ASAGSF Trigger: AAAGGAGCCTGCAGATGCTCACCATCTCATGAGGTG...ACCTGCTCTCTCCTGTCCTTGGAGAGACCCATCATTACAATATGAATTTGGGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR CCA 90 bp | TTGAGAAGGTCCGACACCTCCTTTAGGGGAGAGGAAAGAACTACAACTCCCCTTCCTCATGCTCTGAATTaGAAGCTTTGGTGTCCCATT | + |
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Preference number: 4 (lower is better) Translates to: LRRSDTSFRGEERTTTPLPHALN*KLWCPI Trigger: AATGGGACACCAAAGCTTCCAATTCAGAGCATGAGG...AAGGGGAGTTGTAGTTCTTTCCTCTCCCCTAAAGGAGGTGTCGGACCTTCTCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR TCA 90 bp | AACCCAAATTCATATTGTAATGATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTCTGAGGCTGTCTTCATaGGAAAGAGTGGTTCGCATG | + |
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Preference number: 4 (lower is better) Translates to: NPNSYCNDGSLQGQERAGLRLSS*ERVVRM Trigger: CATGCGAACCACTCTTTCTCATGAAGACAGCCTCAG...ACCTGCTCTCTCCTGTCCTTGGAGAGACCCATCATTACAATATGAATTTGGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR TCA 90 bp | AACCCAAATTCATATTGTAATGATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTGTCAACCTCATGCTCTaGATTGGAAGCTTTGGTGTC | + |
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Preference number: 4 (lower is better) Translates to: NPNSYCNDGSLQGQERAGVNLML*IGSFGV Trigger: GACACCAAAGCTTCCAATTCAGAGCATGAGGTTGAC...ACCTGCTCTCTCCTGTCCTTGGAGAGACCCATCATTACAATATGAATTTGGGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR CCA 90 bp | ATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTACCACATCCTCTGCTTGAGATAGTTGTCTCTCCCTCTTaGACATTAGGAATATGTTTT | + |
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Preference number: 4 (lower is better) Translates to: MGLSKDRREQVPHPLLEIVVSPS*TLGICF Trigger: AAAACATATTCCTAATGTCCAAGAGGGAGAGACAAC...TATCTCAAGCAGAGGATGTGGTACCTGCTCTCTCCTGTCCTTGGAGAGACCCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| 3UTR CAA 72 bp | CCAAGGACAGGAGAGAGCAGGTACCACATCCTCTGCTaGAGATATTGTATGTCTGTCATATCTTCGCATAAC | + |
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Preference number: 4 (lower is better) Translates to: PRTGESRYHILC*RYCMSVISSHN Trigger: GTTATGCGAAGATATGACAGACATACAATATCTCAAGCAGAGGATGTGGTACCTGCTCTCTCCTGTCCTTGG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR TCA 90 bp | AACCCAAATTCATATTGTAATGATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTGACTCAATGCATTCTTaGTCTGTAGGGGAAGTTTGC | + |
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Preference number: 4 (lower is better) Translates to: NPNSYCNDGSLQGQERAGDSMHS*SVGEVC Trigger: GCAAACTTCCCCTACAGATCAAGAATGCATTGAGTC...ACCTGCTCTCTCCTGTCCTTGGAGAGACCCATCATTACAATATGAATTTGGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR CCA 90 bp | TTTCTGAAACAGGGATCACAAAGCATGTGTCCCTTTGGTGAGAACTGGAAAGTCCTGAATTGGAAGCTTTaGTGTCCCATTGGTCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: FLKQGSQSMCPFGENWKVLNWKL*CPIGQK Trigger: CTTCTGACCAATGGGACACCAAAGCTTCCAATTCAG...GACTTTCCAGTTCTCACCAAAGGGACACATGCTTTGTGATCCCTGTTTCAGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR CCA 90 bp | TTGAGAAGGTCCGACACCTCCTTTAGGGGAGAGGAAAGAACTACAACTCCCCTTTTAGTAGAAAAAGAATaGCTGATATCCTCTTGCGGT | + |
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Preference number: 4 (lower is better) Translates to: LRRSDTSFRGEERTTTPLLVEKE*LISSCG Trigger: ACCGCAAGAGGATATCAGCCATTCTTTTTCTACTAA...AAGGGGAGTTGTAGTTCTTTCCTCTCCCCTAAAGGAGGTGTCGGACCTTCTCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR CAA 90 bp | TGTAATGATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTACCACATCCTCTGCTAGTTTGCAGGGCTCCTaGGGAAACAGAGGCTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: CNDGSLQGQERAGTTSSASLQGS*GNRGFP Trigger: AGGAAAGCCTCTGTTTCCCAAGGAGCCCTGCAAACT...AGCAGAGGATGTGGTACCTGCTCTCTCCTGTCCTTGGAGAGACCCATCATTACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR CAA 90 bp | TTGAGAAGGTCCGACACCTCCTTTAGGGGAGAGGAAAGAACTACAACTCCCCTTATCTGTAGGGGAAGTTaGCAGGGCTCCTTGGGAAAC | + |
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Preference number: 5 (lower is better) Translates to: LRRSDTSFRGEERTTTPLICRGS*QGSLGN Trigger: GTTTCCCAAGGAGCCCTGCAAACTTCCCCTACAGAT...AAGGGGAGTTGTAGTTCTTTCCTCTCCCCTAAAGGAGGTGTCGGACCTTCTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR CAA 90 bp | ATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTACCACATCCTCTGCTTGAGATATTGCACTTCTGGAAGTaGTCTCTCCCTCTTGGACAT | + |
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Preference number: 5 (lower is better) Translates to: MGLSKDRREQVPHPLLEILHFWK*SLPLGH Trigger: ATGTCCAAGAGGGAGAGACAACTTCCAGAAGTGCAA...TATCTCAAGCAGAGGATGTGGTACCTGCTCTCTCCTGTCCTTGGAGAGACCCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR CAA 90 bp | TTGAGAAGGTCCGACACCTCCTTTAGGGGAGAGGAAAGAACTACAACTCCCCTTACCTCATGCTCTGAATaGGAAGCTTTGGTGTCCCAT | + |
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Preference number: 5 (lower is better) Translates to: LRRSDTSFRGEERTTTPLTSCSE*EALVSH Trigger: ATGGGACACCAAAGCTTCCAATTCAGAGCATGAGGT...AAGGGGAGTTGTAGTTCTTTCCTCTCCCCTAAAGGAGGTGTCGGACCTTCTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR CAA 90 bp | TGTAATGATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTACCACATCCTCTGCTAGTTGTCTCTCCCTCTaGGACATTAGGAATATGTTT | + |
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Preference number: 5 (lower is better) Translates to: CNDGSLQGQERAGTTSSASCLSL*DIRNMF Trigger: AAACATATTCCTAATGTCCAAGAGGGAGAGACAACT...AGCAGAGGATGTGGTACCTGCTCTCTCCTGTCCTTGGAGAGACCCATCATTACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR CAA 90 bp | AACCCAAATTCATATTGTAATGATGGGTCTCTCCAAGGACAGGAGAGAGCAGGTTCTGAATTGGAAGCTTaGGTGTCCCATTGGTCAGAA | + |
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Preference number: 5 (lower is better) Translates to: NPNSYCNDGSLQGQERAGSELEA*VSHWSE Trigger: TTCTGACCAATGGGACACCAAAGCTTCCAATTCAGA...ACCTGCTCTCTCCTGTCCTTGGAGAGACCCATCATTACAATATGAATTTGGGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS-3UTR CAA 90 bp | TTTCTGAAACAGGGATCACAAAGCATGTGTCCCTTTGGTGAGAACTGGAAAGTCTTCCTCTGTTTTCTTTaGGTAGAAGTAGCGTGTCTG | + |
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Preference number: 5 (lower is better) Translates to: FLKQGSQSMCPFGENWKVFLCFL*VEVACL Trigger: CAGACACGCTACTTCTACCAAAAGAAAACAGAGGAA...GACTTTCCAGTTCTCACCAAAGGGACACATGCTTTGTGATCCCTGTTTCAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS CCA 90 bp | TGGACATTAGGAATATGTTTTGAGTCCTCCTTAGTAGAAAAAGAATaGCTGATATCCTCTTGCGGTGATGATGAGTGTTGCACACCTCTA | + |
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Preference number: 5 (lower is better) Translates to: WTLGICFESSLVEKE*LISSCGDDECCTPL Trigger: TAGAGGTGTGCAACACTCATCATCACCGCAAGAGGATATCAGCCATTCTTTTTCTACTAAGGAGGACTCAAAACATATTCCTAATGTCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS TCA 72 bp | ATGGTCTGTGAATGCCTTGGCTTGGTAGGGGACTTCTaGGGCCCACCTCATGAGATGGTGAGCATCTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: MVCECLGLVGDF*GPPHEMVSICR Trigger: CCTGCAGATGCTCACCATCTCATGAGGTGGGCCTCAGAAGTCCCCTACCAAGCCAAGGCATTCACAGACCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS TCA 72 bp | GGACTGTCTCCATCTGGAGATGACTCAATGCATTCTTaGTCTGTAGGGGAAGTTTGCAGGGCTCCTTGGGAA | + |
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Preference number: 6 (lower is better) Translates to: GLSPSGDDSMHS*SVGEVCRAPWE Trigger: TTCCCAAGGAGCCCTGCAAACTTCCCCTACAGATCAAGAATGCATTGAGTCATCTCCAGATGGAGACAGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS CAA 72 bp | AGGATGGAAGATGGCTTGTCAACCTCATGCTCTGAATaGGAAGCTTTGGTGTCCCATTGGTCAGAAGGGGCT | + |
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Preference number: 6 (lower is better) Translates to: RMEDGLSTSCSE*EALVSHWSEGA Trigger: AGCCCCTTCTGACCAATGGGACACCAAAGCTTCCAATTCAGAGCATGAGGTTGACAAGCCATCTTCCATCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS TCA 72 bp | TGTAAGGATGGAAGATGGCTTGTCAACCTCATGCTCTaGATTGGAAGCTTTGGTGTCCCATTGGTCAGAAGG | + |
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Preference number: 6 (lower is better) Translates to: CKDGRWLVNLML*IGSFGVPLVRR Trigger: CCTTCTGACCAATGGGACACCAAAGCTTCCAATTCAGAGCATGAGGTTGACAAGCCATCTTCCATCCTTACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS TCA 72 bp | TTGCACACCTCTATGGGGACTGTCTCCATCTGGAGATaGCTCAATGCATTCTTGATCTGTAGGGGAAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: LHTSMGTVSIWR*LNAFLICRGSL Trigger: CAAACTTCCCCTACAGATCAAGAATGCATTGAGTCATCTCCAGATGGAGACAGTCCCCATAGAGGTGTGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS CAA 72 bp | GATGGCTTGTCAACCTCATGCTCTGAATTGGAAGCTTaGGTGTCCCATTGGTCAGAAGGGGCTTTTTCTGAT | + |
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Preference number: 6 (lower is better) Translates to: DGLSTSCSELEA*VSHWSEGAFSD Trigger: ATCAGAAAAAGCCCCTTCTGACCAATGGGACACCAAAGCTTCCAATTCAGAGCATGAGGTTGACAAGCCATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS GCA 72 bp | TCTTCTGTAAGGATGGAAGATGGCTTGTCAACCTCATaGTCTGAATTGGAAGCTTTGGTGTCCCATTGGTCA | + |
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Preference number: 6 (lower is better) Translates to: SSVRMEDGLSTS*SELEALVSHWS Trigger: TGACCAATGGGACACCAAAGCTTCCAATTCAGAGCATGAGGTTGACAAGCCATCTTCCATCCTTACAGAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS GCA 72 bp | TCCTCCTTAGTAGAAAAAGAATGGCTGATATCCTCTTaGGGTGATGATGAGTGTTGCACACCTCTATGGGGA | + |
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Preference number: 6 (lower is better) Translates to: SSLVEKEWLISS*GDDECCTPLWG Trigger: TCCCCATAGAGGTGTGCAACACTCATCATCACCGCAAGAGGATATCAGCCATTCTTTTTCTACTAAGGAGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS CCA 72 bp | TCCCGTTTTGCACTTCTGGAAGTTGTCTCTCCCTCTTaGACATTAGGAATATGTTTTGAGTCCTCCTTAGTA | + |
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Preference number: 6 (lower is better) Translates to: SRFALLEVVSPS*TLGICFESSLV Trigger: TACTAAGGAGGACTCAAAACATATTCCTAATGTCCAAGAGGGAGAGACAACTTCCAGAAGTGCAAAACGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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| CDS TCA 72 bp | AGTTGTCTCTCCCTCTTGGACATTAGGAATATGTTTTaGGTCCTCCTTAGTAGAAAAAGAATGGCTGATATC | + |
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Preference number: 6 (lower is better) Translates to: SCLSLLDIRNMF*VLLSRKRMADI Trigger: GATATCAGCCATTCTTTTTCTACTAAGGAGGACTCAAAACATATTCCTAATGTCCAAGAGGGAGAGACAACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179900.2 |
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