Pregenerated sensors for SRSF9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029538Ensembl transcript IDs: ENSMUST00000031513.14, ENSMUST00000149510.2, ENSMUST00000209604.2
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCACTGCTAGTATGGGCGAGTCGCGGCCCCTaGACCCAGACCGCGACCGTG | + |
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Preference number: 2 (lower is better) Translates to: LNHRHTFSLQPNRSLLVWASRGP*TQTATV Trigger: CACGGTCGCGGTCTGGGTCCAGGGGCCGCGACTCGC...CCATACTAGCAGTGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209604.2 |
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| 3UTR-3UTR GCA 90 bp | CTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCACTGCTAGTATGGCGCACAGCTCGGGACTaGAGCCATTTCCTAATAGTT | + |
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Preference number: 2 (lower is better) Translates to: LNHRHTFSLQPNRSLLVWRTARD*SHFLIV Trigger: AACTATTAGGAAATGGCTGCAGTCCCGAGCTGTGCG...CCATACTAGCAGTGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209604.2 |
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| 3UTR CAA 90 bp | TGGTGTCATGAAAGGGAAATGTGCTCCTGCTCTCAAAGGCTGTGTTaGCTGCGCACAGCTCGGGACTGCAGCCATTTCCTAATAGTTTTC | + |
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Preference number: 2 (lower is better) Translates to: WCHEREMCSCSQRLC*LRTARDCSHFLIVF Trigger: GAAAACTATTAGGAAATGGCTGCAGTCCCGAGCTGTGCGCAGCAAACACAGCCTTTGAGAGCAGGAGCACATTTCCCTTTCATGACACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209604.2 |
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| 3UTR-3UTR TCA 90 bp | CTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCACTGCTAGTATGGTGTACAGCTTGTTCCTaGACCACAGACACACCTTCT | + |
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Preference number: 2 (lower is better) Translates to: LNHRHTFSLQPNRSLLVWCTACS*TTDTPS Trigger: AGAAGGTGTGTCTGTGGTTCAGGAACAAGCTGTACA...CCATACTAGCAGTGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031513.14 ENSMUST00000149510.2 ENSMUST00000209604.2 |
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| 3UTR-3UTR TCA 90 bp | CTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCACTGCTAGTATGGATGAAGATGCAGCACTaGTTTCCGTCCCATAGTCAG | + |
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Preference number: 2 (lower is better) Translates to: LNHRHTFSLQPNRSLLVWMKMQH*FPSHSQ Trigger: CTGACTATGGGACGGAAATCAGTGCTGCATCTTCAT...CCATACTAGCAGTGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031513.14 ENSMUST00000149510.2 ENSMUST00000209604.2 |
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| 3UTR-3UTR TCA 90 bp | CTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCACTGCTAGTATGGAATCCGCATTTTGTGTaGAATACGGTCAGCATCCTC | + |
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Preference number: 2 (lower is better) Translates to: LNHRHTFSLQPNRSLLVWNPHFV*NTVSIL Trigger: GAGGATGCTGACCGTATTTCACACAAAATGCGGATT...CCATACTAGCAGTGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209604.2 |
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| 3UTR-3UTR CAA 90 bp | CTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCACTGCTAGTATGGTCTCAAAGGCTGTGTTaGCTGCGCACAGCTCGGGAC | + |
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Preference number: 3 (lower is better) Translates to: LNHRHTFSLQPNRSLLVWSQRLC*LRTARD Trigger: GTCCCGAGCTGTGCGCAGCAAACACAGCCTTTGAGA...CCATACTAGCAGTGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209604.2 |
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| 3UTR-3UTR CAA 90 bp | CTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCACTGCTAGTATGGCACGAGGCGTGGCACTaGACACAGAACTTGACTATT | + |
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Preference number: 3 (lower is better) Translates to: LNHRHTFSLQPNRSLLVWHEAWH*TQNLTI Trigger: AATAGTCAAGTTCTGTGTCAAGTGCCACGCCTCGTG...CCATACTAGCAGTGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209604.2 |
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| 3UTR TCA 72 bp | CATCTCCGAGCAGAGCAGCCCATGAAGATGCAGCACTaGTTTCCGTCCCATAGTCAGGGTGAAAAATGTACA | + |
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Preference number: 3 (lower is better) Translates to: HLRAEQPMKMQH*FPSHSQGEKCT Trigger: TGTACATTTTTCACCCTGACTATGGGACGGAAATCAGTGCTGCATCTTCATGGGCTGCTCTGCTCGGAGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031513.14 ENSMUST00000209604.2 |
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| 3UTR-3UTR CAA 90 bp | TACAGCTTGTTCCTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCAGCTTCAGTCTATTTTTaGAGGCAAACTGCAAGACAC | + |
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Preference number: 3 (lower is better) Translates to: YSLFLNHRHTFSLQPNRSASVYF*RQTARH Trigger: GTGTCTTGCAGTTTGCCTCAAAAAATAGACTGAAGC...TGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAGGAACAAGCTGTA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209604.2 |
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| 3UTR TCA 72 bp | AGCATCTCTCTTGCATTAAACAATCCGCATTTTGTGTaGAATACGGTCAGCATCCTCTGCTTCATGGGCTAT | + |
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Preference number: 3 (lower is better) Translates to: SISLALNNPHFV*NTVSILCFMGY Trigger: ATAGCCCATGAAGCAGAGGATGCTGACCGTATTTCACACAAAATGCGGATTGTTTAATGCAAGAGAGATGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209604.2 |
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| CDS-3UTR CCA 90 bp | TACAGCTTGTTCCTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCAGCGAGTCGCGGCCCCTaGACCCAGACCGCGACCGTG | + |
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Preference number: 4 (lower is better) Translates to: YSLFLNHRHTFSLQPNRSASRGP*TQTATV Trigger: CACGGTCGCGGTCTGGGTCCAGGGGCCGCGACTCGC...TGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAGGAACAAGCTGTA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031513.14 ENSMUST00000149510.2 |
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| CDS-3UTR CCA 90 bp | CTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCACTGCTAGTATGGGGCGAGCCCCGGCTTTaGTATGGCGAGTCGCGGCCC | + |
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Preference number: 4 (lower is better) Translates to: LNHRHTFSLQPNRSLLVWGEPRL*YGESRP Trigger: GGGCCGCGACTCGCCATACCAAAGCCGGGGCTCGCC...CCATACTAGCAGTGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031513.14 ENSMUST00000149510.2 |
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| CDS-3UTR GCA 90 bp | TACAGCTTGTTCCTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCAGGTTGCCCACGTAGATaGGCCCGTCGCCCTCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: YSLFLNHRHTFSLQPNRSGCPRR*ARRPRR Trigger: GCGGCGAGGGCGACGGGCGCATCTACGTGGGCAACC...TGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAGGAACAAGCTGTA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031513.14 |
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| CDS-3UTR TCA 90 bp | CTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCACTGCTAGTATGGGTCGGCAGGCAGAGATaGAGCTCTCCTCCCAACGAG | + |
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Preference number: 4 (lower is better) Translates to: LNHRHTFSLQPNRSLLVWVGRQR*SSPPNE Trigger: CTCGTTGGGAGGAGAGCTTCATCTCTGCCTGCCGAC...CCATACTAGCAGTGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209604.2 |
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| CDS-3UTR TCA 90 bp | CTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCACTGCTAGTATGGAAGAACTCGGAAATCTaGCCGTCTTGTAGGAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: LNHRHTFSLQPNRSLLVWKNSEI*PSCRRP Trigger: GGGCCTCCTACAAGACGGTCAGATTTCCGAGTTCTT...CCATACTAGCAGTGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031513.14 ENSMUST00000149510.2 |
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| CDS-3UTR GCA 90 bp | CTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCACTGCTAGTATGGCGCACAGCTCGGGACTaGAGCCATTTCCTGAAACAA | + |
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Preference number: 4 (lower is better) Translates to: LNHRHTFSLQPNRSLLVWRTARD*SHFLKQ Trigger: TTGTTTCAGGAAATGGCTGCAGTCCCGAGCTGTGCG...CCATACTAGCAGTGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149510.2 |
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| CDS-3UTR GCA 90 bp | TACAGCTTGTTCCTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCAAAAGGCTGTGTTTGCTaGGCACAGCTCGGGACTGCA | + |
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Preference number: 4 (lower is better) Translates to: YSLFLNHRHTFSLQPNRSKGCVC*AQLGTA Trigger: TGCAGTCCCGAGCTGTGCGCAGCAAACACAGCCTTT...TGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAGGAACAAGCTGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149510.2 |
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| CDS-3UTR GCA 90 bp | TACAGCTTGTTCCTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCACTCAAAGGCTGTGTTTaGTGCGCACAGCTCGGGACT | + |
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Preference number: 4 (lower is better) Translates to: YSLFLNHRHTFSLQPNRSLKGCV*CAQLGT Trigger: AGTCCCGAGCTGTGCGCAGCAAACACAGCCTTTGAG...TGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAGGAACAAGCTGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149510.2 |
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| CDS-3UTR GCA 90 bp | CTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCACTGCTAGTATGGAGGGAAATGTGCTCCTaGTCTCAAAGGCTGTGTTTG | + |
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Preference number: 4 (lower is better) Translates to: LNHRHTFSLQPNRSLLVWREMCS*SQRLCL Trigger: CAAACACAGCCTTTGAGAGCAGGAGCACATTTCCCT...CCATACTAGCAGTGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149510.2 |
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| CDS-3UTR GCA 90 bp | CTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCACTGCTAGTATGGCATGAAAGGGAAATGTaGTCCTGCTCTCAAAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: LNHRHTFSLQPNRSLLVWHEREM*SCSQRL Trigger: CAGCCTTTGAGAGCAGGAGCACATTTCCCTTTCATG...CCATACTAGCAGTGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149510.2 |
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| CDS-3UTR TCA 90 bp | CTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCACTGCTAGTATGGACTGCAGCCATTTCCTaGAACAAGAACTCGGAAATC | + |
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Preference number: 4 (lower is better) Translates to: LNHRHTFSLQPNRSLLVWTAAIS*NKNSEI Trigger: GATTTCCGAGTTCTTGTTTCAGGAAATGGCTGCAGT...CCATACTAGCAGTGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149510.2 |
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| CDS TCA 90 bp | AATCTCCAACCCAGGCCGGCGAGACACCGGGTCGGCAGGCAGAGATaGAGCTCTCCTCCCAACGAGGCGCGGGTCCTCGAAGCGCACGAA | + |
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Preference number: 5 (lower is better) Translates to: NLQPRPARHRVGRQR*SSPPNEARVLEAHE Trigger: TTCGTGCGCTTCGAGGACCCGCGCCTCGTTGGGAGGAGAGCTTCATCTCTGCCTGCCGACCCGGTGTCTCGCCGGCCTGGGTTGGAGATT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209604.2 |
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| CDS-3UTR CAA 90 bp | TACAGCTTGTTCCTGAACCACAGACACACCTTCTCTCTGCAGCCTAACAGGTCATCTCAAAGGCTGTGTTaGCTGCGCACAGCTCGGGAC | + |
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Preference number: 5 (lower is better) Translates to: YSLFLNHRHTFSLQPNRSSQRLC*LRTARD Trigger: GTCCCGAGCTGTGCGCAGCAAACACAGCCTTTGAGA...TGACCTGTTAGGCTGCAGAGAGAAGGTGTGTCTGTGGTTCAGGAACAAGCTGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149510.2 |
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| CDS TCA 72 bp | CCCAGGCCGGCGAGACACCGGGTCGGCAGGCAGAGATaGAGCTCTCCTCCCAACGAGGCGCGGGTCCTCGAA | + |
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Preference number: 6 (lower is better) Translates to: PRPARHRVGRQR*SSPPNEARVLE Trigger: TTCGAGGACCCGCGCCTCGTTGGGAGGAGAGCTTCATCTCTGCCTGCCGACCCGGTGTCTCGCCGGCCTGGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209604.2 |
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| CDS CAA 90 bp | TGGTGTCATGAAAGGGAAATGTGCTCCTGCTCTCAAAGGCTGTGTTaGCTGCGCACAGCTCGGGACTGCAGCCATTTCCTGAAACAAGAA | + |
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Preference number: 6 (lower is better) Translates to: WCHEREMCSCSQRLC*LRTARDCSHFLKQE Trigger: TTCTTGTTTCAGGAAATGGCTGCAGTCCCGAGCTGTGCGCAGCAAACACAGCCTTTGAGAGCAGGAGCACATTTCCCTTTCATGACACCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149510.2 |
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| CDS GCA 72 bp | TCTCAAAGGCTGTGTTTGCTGCGCACAGCTCGGGACTaGAGCCATTTCCTGAAACAAGAACTCGGAAATCTG | + |
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Preference number: 6 (lower is better) Translates to: SQRLCLLRTARD*SHFLKQELGNL Trigger: CAGATTTCCGAGTTCTTGTTTCAGGAAATGGCTGCAGTCCCGAGCTGTGCGCAGCAAACACAGCCTTTGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149510.2 |
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