Pregenerated sensors for SRSF7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024097Ensembl transcript IDs: ENSMUST00000063417.11, ENSMUST00000234095.2, ENSMUST00000234503.2, ENSMUST00000234696.2, ENSMUST00000235069.2
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AACGACGATCAAACTGACAGCCAAAAGAGCCAGATGAGGCTTGATTaGCGCAAGAAGATTTTTCTAGTTGGGAATGTGGTCAATCTGGTG | + |
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Preference number: 1 (lower is better) Translates to: NDDQTDSQKSQMRLD*RKKIFLVGNVVNLV Trigger: CACCAGATTGACCACATTCCCAACTAGAAAAATCTTCTTGCGTCAATCAAGCCTCATCTGGCTCTTTTGGCTGTCAGTTTGATCGTCGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR TCA 90 bp | ACCCTCTTTGGCCCATGGTCTAGTAGTAGGTCTAGTAGATCTAGATaGTCTAGAAGTATCTATAGCCGATCGCTGCATCTAGATGTTTTC | + |
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Preference number: 1 (lower is better) Translates to: TLFGPWSSSRSSRSR*SRSIYSRSLHLDVF Trigger: GAAAACATCTAGATGCAGCGATCGGCTATAGATACTTCTAGATCATCTAGATCTACTAGACCTACTACTAGACCATGGGCCAAAGAGGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR GCA 90 bp | TGTAAGCCAAATTTACTGTTACGGCGATCACCGACTCAAATTTTCTaGCCTTTAAAGAATAAGGTGAAGCTAGGTGTAGATGACTCGAGG | + |
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Preference number: 1 (lower is better) Translates to: CKPNLLLRRSPTQIF*PLKNKVKLGVDDSR Trigger: CCTCGAGTCATCTACACCTAGCTTCACCTTATTCTTTAAAGGGCAGAAAATTTGAGTCGGTGATCGCCGTAACAGTAAATTTGGCTTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR TCA 90 bp | GAAAATGACCATTACTGCCCTATTATGCATAATATATTTAAAGTCTaGGTAAGAACCTACTGGCTACACCATTCTAAGGTCTACCAGACA | + |
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Preference number: 1 (lower is better) Translates to: ENDHYCPIMHNIFKV*VRTYWLHHSKVYQT Trigger: TGTCTGGTAGACCTTAGAATGGTGTAGCCAGTAGGTTCTTACTCAGACTTTAAATATATTATGCATAATAGGGCAGTAATGGTCATTTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| 3UTR-3UTR TCA 90 bp | CCTTGCAAGTTTGCAGGTCGACCCTCTTTGGCCCATGGTCTAGTAGTAGGTCTAGAAGCTAGGTGTAGATaGCTCGAGGGGATCTGGCCT | + |
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Preference number: 2 (lower is better) Translates to: PCKFAGRPSLAHGLVVGLEARCR*LEGIWP Trigger: AGGCCAGATCCCCTCGAGTCATCTACACCTAGCTTC...TAGACCTACTACTAGACCATGGGCCAAAGAGGGTCGACCTGCAAACTTGCAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR-3UTR GCA 90 bp | GAGCGGGATCTCGATCCTATTATAGAACCAGACCTAGATCTTCTGAGTGAAGCTTCCGTCCTCGGCTCCTaGTGCGGGAGCGAGAGTATC | + |
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Preference number: 2 (lower is better) Translates to: ERDLDPIIEPDLDLLSEASVLGS*CGSESI Trigger: GATACTCTCGCTCCCGCAGCAGGAGCCGAGGACGGA...AGCTTCACTCAGAAGATCTAGGTCTGGTTCTATAATAGGATCGAGATCCCGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR-3UTR TCA 90 bp | TGTGGTCAATCTGGTGTTCCTCTTTCTAAAGCGGAGGGGGCCCCAATTGTAAGCCAAGGCGCCTCAGCATaGTATCATAAGGCTCGTGAC | + |
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Preference number: 2 (lower is better) Translates to: CGQSGVPLSKAEGAPIVSQGASA*YHKARD Trigger: GTCACGAGCCTTATGATATCATGCTGAGGCGCCTTG...GCTTACAATTGGGGCCCCCTCCGCTTTAGAAAGAGGAACACCAGATTGACCACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR-3UTR TCA 90 bp | CAGTCCATTCTTTCTGGACTTGCACTTCTGTGTGGACTTCCTGATGGGGAACGAGCCAAAAGAGCCAGATaGGGCTTGATTGACGCAAGA | + |
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Preference number: 2 (lower is better) Translates to: QSILSGLALLCGLPDGERAKRAR*GLIDAR Trigger: TCTTGCGTCAATCAAGCCTCATCTGGCTCTTTTGGC...TCGTTCCCCATCAGGAAGTCCACACAGAAGTGCAAGTCCAGAAAGAATGGACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR-3UTR TCA 90 bp | CAGTCCATTCTTTCTGGACTTGCACTTCTGTGTGGACTTCCTGATGGGGAACGAGAAATCAGTTTCTACTaGCATGTCAGTAACTCTGCT | + |
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Preference number: 2 (lower is better) Translates to: QSILSGLALLCGLPDGEREISFY*HVSNSA Trigger: AGCAGAGTTACTGACATGTCAGTAGAAACTGATTTC...TCGTTCCCCATCAGGAAGTCCACACAGAAGTGCAAGTCCAGAAAGAATGGACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR-3UTR TCA 90 bp | GGTCTAGTAGTAGGTCTAGTAGATCTAGATGATCTAGAAGTATCTATAGCCGATTCTGGCCTCTTATGCTaGTCACCTCAAGGTCTAGGA | + |
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Preference number: 2 (lower is better) Translates to: GLVVGLVDLDDLEVSIADSGLLC*SPQGLG Trigger: TCCTAGACCTTGAGGTGATCAGCATAAGAGGCCAGA...ATCGGCTATAGATACTTCTAGATCATCTAGATCTACTAGACCTACTACTAGACC 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR-3UTR GCA 90 bp | CTTCAGTCCATTCTTTCTGGACTTGCACTTCTGTGTGGACTTCCTGATGGGGAACCGACTCAAATTTTCTaGCCTTTAAAGAATAAGGTG | + |
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Preference number: 2 (lower is better) Translates to: LQSILSGLALLCGLPDGEPTQIF*PLKNKV Trigger: CACCTTATTCTTTAAAGGGCAGAAAATTTGAGTCGG...TTCCCCATCAGGAAGTCCACACAGAAGTGCAAGTCCAGAAAGAATGGACTGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR-3UTR CCA 90 bp | GATGCACTCATGCTATTAAGGACTCAAAGATCATCTTACCCAAAGGTACAAGAGACAGAGGACTGGGGCTaGATAATTTTGCAAAGCTGG | + |
|
Preference number: 2 (lower is better) Translates to: DALMLLRTQRSSYPKVQETEDWG*IILQSW Trigger: CCAGCTTTGCAAAATTATCCAGCCCCAGTCCTCTGT...CTCTTGTACCTTTGGGTAAGATGATCTTTGAGTCCTTAATAGCATGAGTGCATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| 3UTR-3UTR TCA 90 bp | GATGCACTCATGCTATTAAGGACTCAAAGATCATCTTACCCAAAGGTACAAGAGGAGCCAGATGAGGCTTaGTTGACGCAAGAAGATTTT | + |
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Preference number: 2 (lower is better) Translates to: DALMLLRTQRSSYPKVQEEPDEA*LTQEDF Trigger: AAAATCTTCTTGCGTCAATCAAGCCTCATCTGGCTC...CTCTTGTACCTTTGGGTAAGATGATCTTTGAGTCCTTAATAGCATGAGTGCATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR-3UTR CCA 90 bp | ACCCAACTTAATAGCCTGAAAAACTACACTACTAAAATCTCAGCCGCTAGAAATACAGAGGACTGGGGCTaGATAATTTTGCAAAGCTGG | + |
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Preference number: 2 (lower is better) Translates to: TQLNSLKNYTTKISAARNTEDWG*IILQSW Trigger: CCAGCTTTGCAAAATTATCCAGCCCCAGTCCTCTGT...ATTTCTAGCGGCTGAGATTTTAGTAGTGTAGTTTTTCAGGCTATTAAGTTGGGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| 3UTR-3UTR CCA 90 bp | ACCCAACTTAATAGCCTGAAAAACTACACTACTAAAATCTCAGCCGCTAGAAATACCCTCTTTGGCCCATaGTCTAGTAGTAGGTCTAGT | + |
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Preference number: 2 (lower is better) Translates to: TQLNSLKNYTTKISAARNTLFGP*SSSRSS Trigger: ACTAGACCTACTACTAGACCATGGGCCAAAGAGGGT...ATTTCTAGCGGCTGAGATTTTAGTAGTGTAGTTTTTCAGGCTATTAAGTTGGGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR-3UTR TCA 90 bp | GATGCACTCATGCTATTAAGGACTCAAAGATCATCTTACCCAAAGGTACAAGAGGAAATCAGTTTCTACTaGCATGTCAGTAACTCTGCT | + |
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Preference number: 2 (lower is better) Translates to: DALMLLRTQRSSYPKVQEEISFY*HVSNSA Trigger: AGCAGAGTTACTGACATGTCAGTAGAAACTGATTTC...CTCTTGTACCTTTGGGTAAGATGATCTTTGAGTCCTTAATAGCATGAGTGCATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 ENSMUST00000234503.2 |
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| 3UTR-3UTR TCA 90 bp | ATACCAGCTTGGCAAAATAGAACAATGTCAGTAACCAAGCTAACCAAGTGCAACGAAATCAGTTTCTACTaGCATGTCAGTAACTCTGCT | + |
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Preference number: 2 (lower is better) Translates to: IPAWQNRTMSVTKLTKCNEISFY*HVSNSA Trigger: AGCAGAGTTACTGACATGTCAGTAGAAACTGATTTC...GTTGCACTTGGTTAGCTTGGTTACTGACATTGTTCTATTTTGCCAAGCTGGTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| 3UTR-3UTR CCA 90 bp | CATGCACCAATTTGTAGGCTTATCAGTGGTCCCTCTAAGCTTGACAATTCCAAATCCATTTTGATTAGATaGTTGATGATCCTTCCTAGG | + |
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Preference number: 2 (lower is better) Translates to: HAPICRLISGPSKLDNSKSILIR*LMILPR Trigger: CCTAGGAAGGATCATCAACCATCTAATCAAAATGGA...TTTGGAATTGTCAAGCTTAGAGGGACCACTGATAAGCCTACAAATTGGTGCATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 ENSMUST00000234503.2 |
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| 3UTR-3UTR CCA 90 bp | TGTTTTCTTCAATCTAACGACGATCAAACTGACAGCCAAAAGAGCCAGATGAGGGAAGATTTTTCTAGTTaGGAATGTGGTCAATCTGGT | + |
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Preference number: 2 (lower is better) Translates to: CFLQSNDDQTDSQKSQMREDFSS*ECGQSG Trigger: ACCAGATTGACCACATTCCCAACTAGAAAAATCTTC...CCTCATCTGGCTCTTTTGGCTGTCAGTTTGATCGTCGTTAGATTGAAGAAAACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR-3UTR CCA 90 bp | ACCCAACTTAATAGCCTGAAAAACTACACTACTAAAATCTCAGCCGCTAGAAATTCAGTCCATTCTTTCTaGACTTGCACTTCTGTGTGG | + |
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Preference number: 2 (lower is better) Translates to: TQLNSLKNYTTKISAARNSVHSF*TCTSVW Trigger: CCACACAGAAGTGCAAGTCCAGAAAGAATGGACTGA...ATTTCTAGCGGCTGAGATTTTAGTAGTGTAGTTTTTCAGGCTATTAAGTTGGGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR-3UTR CCA 90 bp | TGTAGGCTTATCAGTGGTCCCTCTAAGCTTGACAATTCCAAATTGTTAACACCATCCATTTTGATTAGATaGTTGATGATCCTTCCTAGG | + |
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Preference number: 2 (lower is better) Translates to: CRLISGPSKLDNSKLLTPSILIR*LMILPR Trigger: CCTAGGAAGGATCATCAACCATCTAATCAAAATGGA...TGGTGTTAACAATTTGGAATTGTCAAGCTTAGAGGGACCACTGATAAGCCTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 ENSMUST00000234503.2 |
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| 3UTR-3UTR CCA 90 bp | ACCCAACTTAATAGCCTGAAAAACTACACTACTAAAATCTCAGCCGCTAGAAATAAAAGAACAGAGGACTaGGGCTGGATAATTTTGCAA | + |
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Preference number: 2 (lower is better) Translates to: TQLNSLKNYTTKISAARNKRTED*GWIILQ Trigger: TTGCAAAATTATCCAGCCCCAGTCCTCTGTTCTTTT...ATTTCTAGCGGCTGAGATTTTAGTAGTGTAGTTTTTCAGGCTATTAAGTTGGGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| 3UTR GCA 72 bp | GAGATGCTGATCTTGACCTCCGTCCTCGGCTCCTGCTaGGGGAGCGAGAGTATCGCCTTCCCCTGGATCGGG | + |
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Preference number: 3 (lower is better) Translates to: EMLILTSVLGSC*GSESIAFPWIG Trigger: CCCGATCCAGGGGAAGGCGATACTCTCGCTCCCGCAGCAGGAGCCGAGGACGGAGGTCAAGATCAGCATCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR GCA 72 bp | GAGGAGATGCTGATCTTGACCTCCGTCCTCGGCTCCTaGTGCGGGAGCGAGAGTATCGCCTTCCCCTGGATC | + |
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Preference number: 3 (lower is better) Translates to: EEMLILTSVLGS*CGSESIAFPWI Trigger: GATCCAGGGGAAGGCGATACTCTCGCTCCCGCAGCAGGAGCCGAGGACGGAGGTCAAGATCAGCATCTCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR TCA 72 bp | TCGCCTTCCCCTGGATCGGGAATGGGATCTAGATCGTaGCCTTGCAAGTTTGCAGGTCGACCCTCTTTGGCC | + |
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Preference number: 3 (lower is better) Translates to: SPSPGSGMGSRS*PCKFAGRPSLA Trigger: GGCCAAAGAGGGTCGACCTGCAAACTTGCAAGGTCACGATCTAGATCCCATTCCCGATCCAGGGGAAGGCGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR CCA 72 bp | CGGGAGCGAGAGTATCGCCTTCCCCTGGATCGGGAATaGGATCTAGATCGTGACCTTGCAAGTTTGCAGGTC | + |
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Preference number: 3 (lower is better) Translates to: REREYRLPLDRE*DLDRDLASLQV Trigger: GACCTGCAAACTTGCAAGGTCACGATCTAGATCCCATTCCCGATCCAGGGGAAGGCGATACTCTCGCTCCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR TCA 72 bp | CATTCTTTCTGGACTTGCACTTCTGTGTGGACTTCCTaGTGGGGAACGACTTCTTTTAGGAGATGGAGATCT | + |
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Preference number: 3 (lower is better) Translates to: HSFWTCTSVWTS*WGTTSFRRWRS Trigger: AGATCTCCATCTCCTAAAAGAAGTCGTTCCCCATCAGGAAGTCCACACAGAAGTGCAAGTCCAGAAAGAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR TCA 72 bp | CAAACTGACAGCCAAAAGAGCCAGATGAGGCTTGATTaGCGCAAGAAGATTTTTCTAGTTGGGAATGTGGTC | + |
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Preference number: 3 (lower is better) Translates to: QTDSQKSQMRLD*RKKIFLVGNVV Trigger: GACCACATTCCCAACTAGAAAAATCTTCTTGCGTCAATCAAGCCTCATCTGGCTCTTTTGGCTGTCAGTTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR TCA 72 bp | GGCCCATGGTCTAGTAGTAGGTCTAGTAGATCTAGATaGTCTAGAAGTATCTATAGCCGATCGCTGCATCTA | + |
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Preference number: 3 (lower is better) Translates to: GPWSSSRSSRSR*SRSIYSRSLHL Trigger: TAGATGCAGCGATCGGCTATAGATACTTCTAGATCATCTAGATCTACTAGACCTACTACTAGACCATGGGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| 3UTR-3UTR CAA 90 bp | GATGCACTCATGCTATTAAGGACTCAAAGATCATCTTACCCAAAGGTACAAGAGTGGGGCTGGATAATTTaGCAAAGCTGGTTTACAAGG | + |
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Preference number: 3 (lower is better) Translates to: DALMLLRTQRSSYPKVQEWGWII*QSWFTR Trigger: CCTTGTAAACCAGCTTTGCAAAATTATCCAGCCCCA...CTCTTGTACCTTTGGGTAAGATGATCTTTGAGTCCTTAATAGCATGAGTGCATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| 3UTR TCA 72 bp | CATTACTGCCCTATTATGCATAATATATTTAAAGTCTaGGTAAGAACCTACTGGCTACACCATTCTAAGGTC | + |
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Preference number: 3 (lower is better) Translates to: HYCPIMHNIFKV*VRTYWLHHSKV Trigger: GACCTTAGAATGGTGTAGCCAGTAGGTTCTTACTCAGACTTTAAATATATTATGCATAATAGGGCAGTAATG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| CDS-3UTR GCA 90 bp | CATGCACCAATTTGTAGGCTTATCAGTGGTCCCTCTAAGCTTGACAATTCCAAAGTCCTCGGCTCCTGCTaGGGGAGCGAGAGTATCGCC | + |
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Preference number: 4 (lower is better) Translates to: HAPICRLISGPSKLDNSKVLGSC*GSESIA Trigger: GGCGATACTCTCGCTCCCGCAGCAGGAGCCGAGGAC...TTTGGAATTGTCAAGCTTAGAGGGACCACTGATAAGCCTACAAATTGGTGCATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| CDS-3UTR CCA 90 bp | CTTTCTAAAGCGGAGGGGGCCCCAATTGTAAGCCAAATTTACTGTTACGGCGATGGGACGACGGGCAGGTaGCCTATCAAAACGAGATCT | + |
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Preference number: 4 (lower is better) Translates to: LSKAEGAPIVSQIYCYGDGTTGR*PIKTRS Trigger: AGATCTCGTTTTGATAGGCCACCTGCCCGTCGTCCC...ATCGCCGTAACAGTAAATTTGGCTTACAATTGGGGCCCCCTCCGCTTTAGAAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| CDS-3UTR GCA 90 bp | GATGCACTCATGCTATTAAGGACTCAAAGATCATCTTACCCAAAGGTACAAGAGTCCGTCCTCGGCTCCTaGTGCGGGAGCGAGAGTATC | + |
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Preference number: 4 (lower is better) Translates to: DALMLLRTQRSSYPKVQESVLGS*CGSESI Trigger: GATACTCTCGCTCCCGCAGCAGGAGCCGAGGACGGA...CTCTTGTACCTTTGGGTAAGATGATCTTTGAGTCCTTAATAGCATGAGTGCATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| CDS-3UTR GCA 90 bp | TGTAGGCTTATCAGTGGTCCCTCTAAGCTTGACAATTCCAAATTGTTAACACCATCCGTCCTCGGCTCCTaGTGCGGGAGCGAGAGTATC | + |
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Preference number: 4 (lower is better) Translates to: CRLISGPSKLDNSKLLTPSVLGS*CGSESI Trigger: GATACTCTCGCTCCCGCAGCAGGAGCCGAGGACGGA...TGGTGTTAACAATTTGGAATTGTCAAGCTTAGAGGGACCACTGATAAGCCTACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| CDS-3UTR TCA 90 bp | CAGTCCATTCTTTCTGGACTTGCACTTCTGTGTGGACTTCCTGATGGGGAACGAAGGGCCCATAGTAACTaGATGCCCTTTCTAACTCTC | + |
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Preference number: 4 (lower is better) Translates to: QSILSGLALLCGLPDGERRAHSN*MPFLTL Trigger: GAGAGTTAGAAAGGGCATTCAGTTACTATGGGCCCT...TCGTTCCCCATCAGGAAGTCCACACAGAAGTGCAAGTCCAGAAAGAATGGACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| CDS-3UTR GCA 90 bp | CTTCAGTCCATTCTTTCTGGACTTGCACTTCTGTGTGGACTTCCTGATGGGGAAGAGATCTCCGAGGCATaGCTGTTGATAGTTCAACCC | + |
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Preference number: 4 (lower is better) Translates to: LQSILSGLALLCGLPDGEEISEA*LLIVQP Trigger: GGGTTGAACTATCAACAGGCATGCCTCGGAGATCTC...TTCCCCATCAGGAAGTCCACACAGAAGTGCAAGTCCAGAAAGAATGGACTGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| CDS-3UTR GCA 90 bp | GAGGATCTTAATTGTCGGATTTGCAAGGCGCCTCAGCATGATATCATAAGGCTCATCCAATCCTCGAACTaGATCCTCTGCATCTCTAGG | + |
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Preference number: 4 (lower is better) Translates to: EDLNCRICKAPQHDIIRLIQSSN*ILCISR Trigger: CCTAGAGATGCAGAGGATGCAGTTCGAGGATTGGAT...GAGCCTTATGATATCATGCTGAGGCGCCTTGCAAATCCGACAATTAAGATCCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| CDS-3UTR CCA 90 bp | GATGCACTCATGCTATTAAGGACTCAAAGATCATCTTACCCAAAGGTACAAGAGGGGACGACGGGCAGGTaGCCTATCAAAACGAGATCT | + |
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Preference number: 4 (lower is better) Translates to: DALMLLRTQRSSYPKVQEGTTGR*PIKTRS Trigger: AGATCTCGTTTTGATAGGCCACCTGCCCGTCGTCCC...CTCTTGTACCTTTGGGTAAGATGATCTTTGAGTCCTTAATAGCATGAGTGCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 ENSMUST00000234503.2 |
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| CDS-3UTR TCA 90 bp | GGCTACACCATTCTAAGGTCTACCAGACACTACCAAAGGAGGAAAAACCCAAAAAGGGCCCATAGTAACTaGATGCCCTTTCTAACTCTC | + |
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Preference number: 4 (lower is better) Translates to: GYTILRSTRHYQRRKNPKRAHSN*MPFLTL Trigger: GAGAGTTAGAAAGGGCATTCAGTTACTATGGGCCCT...TTTTGGGTTTTTCCTCCTTTGGTAGTGTCTGGTAGACCTTAGAATGGTGTAGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000063417.11 |
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| CDS-3UTR GCA 90 bp | GGCTACACCATTCTAAGGTCTACCAGACACTACCAAAGGAGGAAAAACCCAAAAATCCAATCCTCGAACTaGATCCTCTGCATCTCTAGG | + |
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Preference number: 4 (lower is better) Translates to: GYTILRSTRHYQRRKNPKIQSSN*ILCISR Trigger: CCTAGAGATGCAGAGGATGCAGTTCGAGGATTGGAT...TTTTGGGTTTTTCCTCCTTTGGTAGTGTCTGGTAGACCTTAGAATGGTGTAGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000063417.11 |
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| CDS-3UTR TCA 90 bp | CATGCACCAATTTGTAGGCTTATCAGTGGTCCCTCTAAGCTTGACAATTCCAAATCTGTGTGGACTTCCTaGTGGGGAACGACTTCTTTT | + |
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Preference number: 4 (lower is better) Translates to: HAPICRLISGPSKLDNSKSVWTS*WGTTSF Trigger: AAAAGAAGTCGTTCCCCATCAGGAAGTCCACACAGA...TTTGGAATTGTCAAGCTTAGAGGGACCACTGATAAGCCTACAAATTGGTGCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| CDS-3UTR GCA 90 bp | GATGCACTCATGCTATTAAGGACTCAAAGATCATCTTACCCAAAGGTACAAGAGGAGATCTCCGAGGCATaGCTGTTGATAGTTCAACCC | + |
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Preference number: 4 (lower is better) Translates to: DALMLLRTQRSSYPKVQEEISEA*LLIVQP Trigger: GGGTTGAACTATCAACAGGCATGCCTCGGAGATCTC...CTCTTGTACCTTTGGGTAAGATGATCTTTGAGTCCTTAATAGCATGAGTGCATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234503.2 |
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| CDS-3UTR TCA 90 bp | GATGCACTCATGCTATTAAGGACTCAAAGATCATCTTACCCAAAGGTACAAGAGTCTGTGTGGACTTCCTaGTGGGGAACGACTTCTTTT | + |
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Preference number: 4 (lower is better) Translates to: DALMLLRTQRSSYPKVQESVWTS*WGTTSF Trigger: AAAAGAAGTCGTTCCCCATCAGGAAGTCCACACAGA...CTCTTGTACCTTTGGGTAAGATGATCTTTGAGTCCTTAATAGCATGAGTGCATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| CDS-3UTR CCA 90 bp | TGTTTTCTTCAATCTAACGACGATCAAACTGACAGCCAAAAGAGCCAGATGAGGTACCAACATATACCTTaGTTTCTCCTCCATACCGCC | + |
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Preference number: 4 (lower is better) Translates to: CFLQSNDDQTDSQKSQMRYQHIP*FLLHTA Trigger: GGCGGTATGGAGGAGAAACCAAGGTATATGTTGGTA...CCTCATCTGGCTCTTTTGGCTGTCAGTTTGATCGTCGTTAGATTGAAGAAAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| CDS-3UTR GCA 90 bp | GATGCACTCATGCTATTAAGGACTCAAAGATCATCTTACCCAAAGGTACAAGAGCATTCTTTCTGGACTTaGACTTCTGTGTGGACTTCC | + |
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Preference number: 4 (lower is better) Translates to: DALMLLRTQRSSYPKVQEHSFWT*TSVWTS Trigger: GGAAGTCCACACAGAAGTGCAAGTCCAGAAAGAATG...CTCTTGTACCTTTGGGTAAGATGATCTTTGAGTCCTTAATAGCATGAGTGCATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| CDS-3UTR CCA 90 bp | ATACCAGCTTGGCAAAATAGAACAATGTCAGTAACCAAGCTAACCAAGTGCAACTACCAACATATACCTTaGTTTCTCCTCCATACCGCC | + |
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Preference number: 4 (lower is better) Translates to: IPAWQNRTMSVTKLTKCNYQHIP*FLLHTA Trigger: GGCGGTATGGAGGAGAAACCAAGGTATATGTTGGTA...GTTGCACTTGGTTAGCTTGGTTACTGACATTGTTCTATTTTGCCAAGCTGGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063417.11 |
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| CDS-3UTR CCA 90 bp | TGTAGGCTTATCAGTGGTCCCTCTAAGCTTGACAATTCCAAATTGTTAACACCATCAGTCCATTCTTTCTaGACTTGCACTTCTGTGTGG | + |
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Preference number: 4 (lower is better) Translates to: CRLISGPSKLDNSKLLTPSVHSF*TCTSVW Trigger: CCACACAGAAGTGCAAGTCCAGAAAGAATGGACTGA...TGGTGTTAACAATTTGGAATTGTCAAGCTTAGAGGGACCACTGATAAGCCTACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| CDS-3UTR GCA 90 bp | ACCCAACTTAATAGCCTGAAAAACTACACTACTAAAATCTCAGCCGCTAGAAATCATTCTTTCTGGACTTaGACTTCTGTGTGGACTTCC | + |
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Preference number: 4 (lower is better) Translates to: TQLNSLKNYTTKISAARNHSFWT*TSVWTS Trigger: GGAAGTCCACACAGAAGTGCAAGTCCAGAAAGAATG...ATTTCTAGCGGCTGAGATTTTAGTAGTGTAGTTTTTCAGGCTATTAAGTTGGGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| CDS GCA 90 bp | AGGGACGACGGGCAGGTGGCCTATCAAAACGAGATCTCCGAGGCATaGCTGTTGATAGTTCAACCCTCACTCGAGAACCACAAATCACTT | + |
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Preference number: 5 (lower is better) Translates to: RDDGQVAYQNEISEA*LLIVQPSLENHKSL Trigger: AAGTGATTTGTGGTTCTCGAGTGAGGGTTGAACTATCAACAGGCATGCCTCGGAGATCTCGTTTTGATAGGCCACCTGCCCGTCGTCCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000063417.11 ENSMUST00000234503.2 ENSMUST00000234696.2 ENSMUST00000235069.2 |
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| CDS-3UTR CAA 90 bp | TGTGGTCAATCTGGTGTTCCTCTTTCTAAAGCGGAGGGGGCCCCAATTGTAAGCTTACCAACATATACCTaGGTTTCTCCTCCATACCGC | + |
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Preference number: 5 (lower is better) Translates to: CGQSGVPLSKAEGAPIVSLPTYT*VSPPYR Trigger: GCGGTATGGAGGAGAAACCAAGGTATATGTTGGTAA...GCTTACAATTGGGGCCCCCTCCGCTTTAGAAAGAGGAACACCAGATTGACCACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000234503.2 |
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| CDS CCA 90 bp | GGTCGTGAAATAGACCTGGATCTTGATCTCGACCTTGAGCGGGATTaGAAATACCTCGATCCTATTATAGAACCAGACCTAGATCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: GREIDLDLDLDLERD*KYLDPIIEPDLDLL Trigger: CAGAAGATCTAGGTCTGGTTCTATAATAGGATCGAGGTATTTCCAATCCCGCTCAAGGTCGAGATCAAGATCCAGGTCTATTTCACGACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| CDS-3UTR CAA 90 bp | GATGCACTCATGCTATTAAGGACTCAAAGATCATCTTACCCAAAGGTACAAGAGTCCGAGGCATGCCTGTaGATAGTTCAACCCTCACTC | + |
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Preference number: 5 (lower is better) Translates to: DALMLLRTQRSSYPKVQESEACL*IVQPSL Trigger: GAGTGAGGGTTGAACTATCAACAGGCATGCCTCGGA...CTCTTGTACCTTTGGGTAAGATGATCTTTGAGTCCTTAATAGCATGAGTGCATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234503.2 |
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| CDS-3UTR CAA 90 bp | CATGCACCAATTTGTAGGCTTATCAGTGGTCCCTCTAAGCTTGACAATTCCAAAATGGAGATCTGGATTTaGATCGGCTGCTTCTTGGTC | + |
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Preference number: 5 (lower is better) Translates to: HAPICRLISGPSKLDNSKMEIWI*IGCFLV Trigger: GACCAAGAAGCAGCCGATCAAAATCCAGATCTCCAT...TTTGGAATTGTCAAGCTTAGAGGGACCACTGATAAGCCTACAAATTGGTGCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| CDS-3UTR CAA 90 bp | ATACCAGCTTGGCAAAATAGAACAATGTCAGTAACCAAGCTAACCAAGTGCAACATGGAGATCTGGATTTaGATCGGCTGCTTCTTGGTC | + |
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Preference number: 5 (lower is better) Translates to: IPAWQNRTMSVTKLTKCNMEIWI*IGCFLV Trigger: GACCAAGAAGCAGCCGATCAAAATCCAGATCTCCAT...GTTGCACTTGGTTAGCTTGGTTACTGACATTGTTCTATTTTGCCAAGCTGGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| CDS-3UTR CAA 90 bp | TGTAGGCTTATCAGTGGTCCCTCTAAGCTTGACAATTCCAAATTGTTAACACCACCATTCTTTCTGGACTaGCACTTCTGTGTGGACTTC | + |
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Preference number: 5 (lower is better) Translates to: CRLISGPSKLDNSKLLTPPFFLD*HFCVDF Trigger: GAAGTCCACACAGAAGTGCAAGTCCAGAAAGAATGG...TGGTGTTAACAATTTGGAATTGTCAAGCTTAGAGGGACCACTGATAAGCCTACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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| CDS-3UTR CAA 90 bp | GATGCACTCATGCTATTAAGGACTCAAAGATCATCTTACCCAAAGGTACAAGAGTTACCAACATATACCTaGGTTTCTCCTCCATACCGC | + |
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Preference number: 5 (lower is better) Translates to: DALMLLRTQRSSYPKVQELPTYT*VSPPYR Trigger: GCGGTATGGAGGAGAAACCAAGGTATATGTTGGTAA...CTCTTGTACCTTTGGGTAAGATGATCTTTGAGTCCTTAATAGCATGAGTGCATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234503.2 |
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| CDS CCA 72 bp | CGGGAGCGAGAGTATCGCCTTCCCCTGGATCGGGAATaGGATCTAGATCGTGACCTGCTTCTTCTTCGTCGG | + |
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Preference number: 6 (lower is better) Translates to: REREYRLPLDRE*DLDRDLLLLRR Trigger: CCGACGAAGAAGAAGCAGGTCACGATCTAGATCCCATTCCCGATCCAGGGGAAGGCGATACTCTCGCTCCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 ENSMUST00000234696.2 ENSMUST00000235069.2 |
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| CDS TCA 72 bp | TCGCCTTCCCCTGGATCGGGAATGGGATCTAGATCGTaGCCTGCTTCTTCTTCGTCGGCTATAGCGATGACA | + |
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Preference number: 6 (lower is better) Translates to: SPSPGSGMGSRS*PASSSSAIAMT Trigger: TGTCATCGCTATAGCCGACGAAGAAGAAGCAGGTCACGATCTAGATCCCATTCCCGATCCAGGGGAAGGCGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 ENSMUST00000234696.2 ENSMUST00000235069.2 |
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| CDS GCA 72 bp | GGGCAGGTGGCCTATCAAAACGAGATCTCCGAGGCATaGCTGTTGATAGTTCAACCCTCACTCGAGAACCAC | + |
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Preference number: 6 (lower is better) Translates to: GQVAYQNEISEA*LLIVQPSLENH Trigger: GTGGTTCTCGAGTGAGGGTTGAACTATCAACAGGCATGCCTCGGAGATCTCGTTTTGATAGGCCACCTGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000063417.11 ENSMUST00000234503.2 ENSMUST00000234696.2 ENSMUST00000235069.2 |
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| CDS CCA 72 bp | GCATCTATCATTAGGATCAAAGGGACGACGGGCAGGTaGCCTATCAAAACGAGATCTCCGAGGCATGCCTGT | + |
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Preference number: 6 (lower is better) Translates to: ASIIRIKGTTGR*PIKTRSPRHAC Trigger: ACAGGCATGCCTCGGAGATCTCGTTTTGATAGGCCACCTGCCCGTCGTCCCTTTGATCCTAATGATAGATGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000063417.11 ENSMUST00000234503.2 ENSMUST00000234696.2 ENSMUST00000235069.2 |
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| CDS CAA 90 bp | GACGGGCAGGTGGCCTATCAAAACGAGATCTCCGAGGCATGCCTGTaGATAGTTCAACCCTCACTCGAGAACCACAAATCACTTTCCCAT | + |
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Preference number: 6 (lower is better) Translates to: DGQVAYQNEISEACL*IVQPSLENHKSLSH Trigger: ATGGGAAAGTGATTTGTGGTTCTCGAGTGAGGGTTGAACTATCAACAGGCATGCCTCGGAGATCTCGTTTTGATAGGCCACCTGCCCGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000063417.11 ENSMUST00000234503.2 ENSMUST00000234696.2 ENSMUST00000235069.2 |
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| CDS CAA 72 bp | GTGGCCTATCAAAACGAGATCTCCGAGGCATGCCTGTaGATAGTTCAACCCTCACTCGAGAACCACAAATCA | + |
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Preference number: 6 (lower is better) Translates to: VAYQNEISEACL*IVQPSLENHKS Trigger: TGATTTGTGGTTCTCGAGTGAGGGTTGAACTATCAACAGGCATGCCTCGGAGATCTCGTTTTGATAGGCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000063417.11 ENSMUST00000234503.2 ENSMUST00000234696.2 ENSMUST00000235069.2 |
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| CDS CCA 72 bp | ATAGACCTGGATCTTGATCTCGACCTTGAGCGGGATTaGAAATACCTCGATCCTATTATAGAACCAGACCTA | + |
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Preference number: 6 (lower is better) Translates to: IDLDLDLDLERD*KYLDPIIEPDL Trigger: TAGGTCTGGTTCTATAATAGGATCGAGGTATTTCCAATCCCGCTCAAGGTCGAGATCAAGATCCAGGTCTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063417.11 ENSMUST00000234095.2 |
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