Pregenerated sensors for SRSF6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000016921Ensembl transcript IDs: ENSMUST00000017065.15, ENSMUST00000130411.7
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCCGGGATCTGGACTTTGACTTTATGTCTCCTTTGCCGTTCTCTTTaGGGGACCGAGACCGTGACCTACTACGTGACTTCCCATACTTAT | + |
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Preference number: 1 (lower is better) Translates to: SGIWTLTLCLLCRSL*GTETVTYYVTSHTY Trigger: ATAAGTATGGGAAGTCACGTAGTAGGTCACGGTCTCGGTCCCCCAAAGAGAACGGCAAAGGAGACATAAAGTCAAAGTCCAGATCCCGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017065.15 |
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| 3UTR GCA 90 bp | CACTATCACGTCCAACAGGACTCAAGATGTTCCCCACTTCTCTTGTaGTTTTATCAGTTGGTGTCGTTGCTATTCCACCCAGGGCACCAA | + |
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Preference number: 1 (lower is better) Translates to: HYHVQQDSRCSPLLL*FYQLVSLLFHPGHQ Trigger: TTGGTGCCCTGGGTGGAATAGCAACGACACCAACTGATAAAAGCACAAGAGAAGTGGGGAACATCTTGAGTCCTGTTGGACGTGATAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR CCA 90 bp | TATCCACCTCCACCACATCACAGTGTGAGGTTTTTGGTGGTGGTTTaGCCACAAAACACGCAAGGTAACAGTCACCTAGTTCAGATTAAC | + |
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Preference number: 1 (lower is better) Translates to: YPPPPHHSVRFLVVV*PQNTQGNSHLVQIN Trigger: GTTAATCTGAACTAGGTGACTGTTACCTTGCGTGTTTTGTGGCCAAACCACCACCAAAAACCTCACACTGTGATGTGGTGGAGGTGGATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017065.15 |
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| 3UTR GCA 90 bp | ACCCAGGGCACCAACCAATGTGTGCAGGATGGGATTCTTCAATTCTaGGCATTAGTTGGTAGGGAACTGAATTCACTCATCAGTAAGAAA | + |
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Preference number: 1 (lower is better) Translates to: TQGTNQCVQDGILQF*ALVGRELNSLISKK Trigger: TTTCTTACTGATGAGTGAATTCAGTTCCCTACCAACTAATGCGCAGAATTGAAGAATCCCATCCTGCACACATTGGTTGGTGCCCTGGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR-3UTR TCA 90 bp | GGAGCAGGTAGAGGCGAGTGGGACCGAGACTGGCTCCGGGATCTGGACTTTGACCTCCTGCTTGCCGCATaGAATCCTTTAAGTCTTGCC | + |
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Preference number: 2 (lower is better) Translates to: GAGRGEWDRDWLRDLDFDLLLAA*NPLSLA Trigger: GGCAAGACTTAAAGGATTTCATGCGGCAAGCAGGAG...GTCAAAGTCCAGATCCCGGAGCCAGTCTCGGTCCCACTCGCCTCTACCTGCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017065.15 |
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| 3UTR-3UTR CCA 90 bp | GGAGCAGGTAGAGGCGAGTGGGACCGAGACTGGCTCCGGGATCTGGACTTTGACGTTTTGTCTAACCCTTaGAATCCTCACCATCACCCT | + |
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Preference number: 2 (lower is better) Translates to: GAGRGEWDRDWLRDLDFDVLSNP*NPHHHP Trigger: AGGGTGATGGTGAGGATTCCAAGGGTTAGACAAAAC...GTCAAAGTCCAGATCCCGGAGCCAGTCTCGGTCCCACTCGCCTCTACCTGCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017065.15 |
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| 3UTR-3UTR GCA 90 bp | GGAGCAGGTAGAGGCGAGTGGGACCGAGACTGGCTCCGGGATCTGGACTTTGACACTTGGGCTTCGATTTaGTCTTTGATCTGGATTTCC | + |
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Preference number: 2 (lower is better) Translates to: GAGRGEWDRDWLRDLDFDTWASI*SLIWIS Trigger: GGAAATCCAGATCAAAGAGCAAATCGAAGCCCAAGT...GTCAAAGTCCAGATCCCGGAGCCAGTCTCGGTCCCACTCGCCTCTACCTGCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017065.15 |
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| 3UTR CAA 90 bp | CTCCGGGATCTGGACTTTGACTTTATGTCTCCTTTGCCGTTCTCTTaGGGGGACCGAGACCGTGACCTACTACGTGACTTCCCATACTTA | + |
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Preference number: 2 (lower is better) Translates to: LRDLDFDFMSPLPFS*GDRDRDLLRDFPYL Trigger: TAAGTATGGGAAGTCACGTAGTAGGTCACGGTCTCGGTCCCCCAAAGAGAACGGCAAAGGAGACATAAAGTCAAAGTCCAGATCCCGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017065.15 |
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| 3UTR-3UTR TCA 90 bp | TGGCTCCGGGATCTGGACTTTGACTTTATGTCTCCTTTGCCGTTCTCTTTGGGGCACCACATCACAGTGTaGGGTTTTTGGTGGTGGTTT | + |
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Preference number: 2 (lower is better) Translates to: WLRDLDFDFMSPLPFSLGHHITV*GFWWWF Trigger: AAACCACCACCAAAAACCTCACACTGTGATGTGGTG...CCCCAAAGAGAACGGCAAAGGAGACATAAAGTCAAAGTCCAGATCCCGGAGCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017065.15 |
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| 3UTR-3UTR TCA 90 bp | GACTGGCTCCGGGATCTGGACTTTGACTTTATGTCTCCTTTGCCGTTCTCTTTGCCTTCTTCTAGACCGTaGTCTGGATCTACTGCCAGA | + |
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Preference number: 2 (lower is better) Translates to: DWLRDLDFDFMSPLPFSLPSSRP*SGSTAR Trigger: TCTGGCAGTAGATCCAGATCACGGTCTAGAAGAAGG...CAAAGAGAACGGCAAAGGAGACATAAAGTCAAAGTCCAGATCCCGGAGCCAGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017065.15 |
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| 3UTR-3UTR GCA 90 bp | CTATTCCACCCAGGGCACCAACCAATGTGTGCAGGATGGGATTCTTCAATTCTGGGCAAGCCCAGCAGTTaGATGCAGTCAGAAAGTCAA | + |
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Preference number: 2 (lower is better) Translates to: LFHPGHQPMCAGWDSSILGKPSS*MQSESQ Trigger: TTGACTTTCTGACTGCATGCAACTGCTGGGCTTGCC...CAGAATTGAAGAATCCCATCCTGCACACATTGGTTGGTGCCCTGGGTGGAATAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR-3UTR TCA 90 bp | CTATTCCACCCAGGGCACCAACCAATGTGTGCAGGATGGGATTCTTCAATTCTGACCTACCTAGGCCCTTaGACCTCTATTTTCCACTCA | + |
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Preference number: 2 (lower is better) Translates to: LFHPGHQPMCAGWDSSILTYLGP*TSIFHS Trigger: TGAGTGGAAAATAGAGGTTCAAGGGCCTAGGTAGGT...CAGAATTGAAGAATCCCATCCTGCACACATTGGTTGGTGCCCTGGGTGGAATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR CAA 90 bp | AAACACTATCACGTCCAACAGGACTCAAGATGTTCCCCACTTCTCTaGTGCTTTTATCAGTTGGTGTCGTTGCTATTCCACCCAGGGCAC | + |
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Preference number: 2 (lower is better) Translates to: KHYHVQQDSRCSPLL*CFYQLVSLLFHPGH Trigger: GTGCCCTGGGTGGAATAGCAACGACACCAACTGATAAAAGCACAAGAGAAGTGGGGAACATCTTGAGTCCTGTTGGACGTGATAGTGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR-3UTR GCA 90 bp | TGGCTCCGGGATCTGGACTTTGACTTTATGTCTCCTTTGCCGTTCTCTTTGGGGTTCTTTGTGAGCATCTaGATAAGTCACTTCTCCTGC | + |
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Preference number: 2 (lower is better) Translates to: WLRDLDFDFMSPLPFSLGFFVSI*ISHFSC Trigger: GCAGGAGAAGTGACTTATGCAGATGCTCACAAAGAA...CCCCAAAGAGAACGGCAAAGGAGACATAAAGTCAAAGTCCAGATCCCGGAGCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017065.15 |
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| 3UTR-3UTR CCA 90 bp | GACTGGCTCCGGGATCTGGACTTTGACTTTATGTCTCCTTTGCCGTTCTCTTTGTTTTTGGTGGTGGTTTaGCCACAAAACACGCAAGGT | + |
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Preference number: 2 (lower is better) Translates to: DWLRDLDFDFMSPLPFSLFLVVV*PQNTQG Trigger: ACCTTGCGTGTTTTGTGGCCAAACCACCACCAAAAA...CAAAGAGAACGGCAAAGGAGACATAAAGTCAAAGTCCAGATCCCGGAGCCAGTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017065.15 |
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| 3UTR-3UTR GCA 90 bp | ACCCAGGGCACCAACCAATGTGTGCAGGATGGGATTCTTCAATTCTGCGCATTACAAACTAACCACAAATaGCCCACTAATACAAAGGGG | + |
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Preference number: 2 (lower is better) Translates to: TQGTNQCVQDGILQFCALQTNHK*PTNTKG Trigger: CCCCTTTGTATTAGTGGGGCATTTGTGGTTAGTTTG...TAATGCGCAGAATTGAAGAATCCCATCCTGCACACATTGGTTGGTGCCCTGGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR-3UTR CCA 90 bp | CACCCAGGGCACCAACCAATGTGTGCAGGATGGGATTCTTCAATTCTGCGCATTGGGCTTGCGGATGTATaGAAACTGCAATCTAATTAT | + |
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Preference number: 2 (lower is better) Translates to: HPGHQPMCAGWDSSILRIGLADV*KLQSNY Trigger: ATAATTAGATTGCAGTTTCCATACATCCGCAAGCCC...AATGCGCAGAATTGAAGAATCCCATCCTGCACACATTGGTTGGTGCCCTGGGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR-3UTR CCA 90 bp | AGGAGTGGGAACATAAAAACTGAAGTAGGTAGGACTCAAACTGGCCATAAAGGCCCAATGTGTGCAGGATaGGATTCTTCAATTCTGCGC | + |
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Preference number: 2 (lower is better) Translates to: RSGNIKTEVGRTQTGHKGPMCAG*DSSILR Trigger: GCGCAGAATTGAAGAATCCCATCCTGCACACATTGG...GCCTTTATGGCCAGTTTGAGTCCTACCTACTTCAGTTTTTATGTTCCCACTCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR CAA 90 bp | GGCTTGCGGATGTATGGAAACTGCAATCTAATTATTCCTACACATTaGCACTATTTATTTCACCTTGGTCTCCACAGCATTCATAGCGCT | + |
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Preference number: 2 (lower is better) Translates to: GLRMYGNCNLIIPTH*HYLFHLGLHSIHSA Trigger: AGCGCTATGAATGCTGTGGAGACCAAGGTGAAATAAATAGTGCAAATGTGTAGGAATAATTAGATTGCAGTTTCCATACATCCGCAAGCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR-3UTR GCA 90 bp | AAATCAAATTCCGGTGTTCCCTTTTCAGGAAATCCTCTTAAAGAAGAGGCGAGTATAAGTCACTTCTCCTaGTTGCCGCATGAAATCCTT | + |
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Preference number: 2 (lower is better) Translates to: KSNSGVPFSGNPLKEEASISHFS*LPHEIL Trigger: AAGGATTTCATGCGGCAAGCAGGAGAAGTGACTTAT...ACTCGCCTCTTCTTTAAGAGGATTTCCTGAAAAGGGAACACCGGAATTTGATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017065.15 |
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| 3UTR-3UTR CCA 90 bp | ATCAAAGAAAAGAAGACTAAAGCAGCAGCTTTGTTTGACACTATGTTCCTAAAGGCAGTTTCAACTAACTaGGCTTGCGGATGTATGGAA | + |
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Preference number: 2 (lower is better) Translates to: IKEKKTKAAALFDTMFLKAVSTN*ACGCME Trigger: TTCCATACATCCGCAAGCCCAGTTAGTTGAAACTGC...CTTTAGGAACATAGTGTCAAACAAAGCTGCTGCTTTAGTCTTCTTTTCTTTGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR-3UTR TCA 90 bp | ATCAAAGAAAAGAAGACTAAAGCAGCAGCTTTGTTTGACACTATGTTCCTAAAGTTATTGCATGTCCTCTaGTTATTTGGCCCTACAAAC | + |
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Preference number: 2 (lower is better) Translates to: IKEKKTKAAALFDTMFLKLLHVL*LFGPTN Trigger: GTTTGTAGGGCCAAATAATCAGAGGACATGCAATAA...CTTTAGGAACATAGTGTCAAACAAAGCTGCTGCTTTAGTCTTCTTTTCTTTGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR-3UTR CAA 90 bp | GGAGCAGGTAGAGGCGAGTGGGACCGAGACTGGCTCCGGGATCTGGACTTTGACGTTTTTGGTGGTGGTTaGGCCACAAAACACGCAAGG | + |
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Preference number: 3 (lower is better) Translates to: GAGRGEWDRDWLRDLDFDVFGGG*ATKHAR Trigger: CCTTGCGTGTTTTGTGGCCAAACCACCACCAAAAAC...GTCAAAGTCCAGATCCCGGAGCCAGTCTCGGTCCCACTCGCCTCTACCTGCTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017065.15 |
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| 3UTR-3UTR CAA 90 bp | TGGCTCCGGGATCTGGACTTTGACTTTATGTCTCCTTTGCCGTTCTCTTTGGGGGATCGGGATCGACCTTaGCTCCGAGACCTAGATCGG | + |
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Preference number: 3 (lower is better) Translates to: WLRDLDFDFMSPLPFSLGDRDRP*LRDLDR Trigger: CCGATCTAGGTCTCGGAGCAAAGGTCGATCCCGATC...CCCCAAAGAGAACGGCAAAGGAGACATAAAGTCAAAGTCCAGATCCCGGAGCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017065.15 |
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| 3UTR CCA 72 bp | TGGACTTTGACTTTATGTCTCCTTTGCCGTTCTCTTTaGGGGACCGAGACCGTGACCTACTACGTGACTTCC | + |
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Preference number: 3 (lower is better) Translates to: WTLTLCLLCRSL*GTETVTYYVTS Trigger: GGAAGTCACGTAGTAGGTCACGGTCTCGGTCCCCCAAAGAGAACGGCAAAGGAGACATAAAGTCAAAGTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017065.15 |
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| 3UTR-3UTR CAA 90 bp | ACCCAGGGCACCAACCAATGTGTGCAGGATGGGATTCTTCAATTCTGCGCATTACACCTACCTAGGCCCTaGAACCTCTATTTTCCACTC | + |
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Preference number: 3 (lower is better) Translates to: TQGTNQCVQDGILQFCALHLPRP*NLYFPL Trigger: GAGTGGAAAATAGAGGTTCAAGGGCCTAGGTAGGTG...TAATGCGCAGAATTGAAGAATCCCATCCTGCACACATTGGTTGGTGCCCTGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR CCA 72 bp | CCACCACATCACAGTGTGAGGTTTTTGGTGGTGGTTTaGCCACAAAACACGCAAGGTAACAGTCACCTAGTT | + |
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Preference number: 3 (lower is better) Translates to: PPHHSVRFLVVV*PQNTQGNSHLV Trigger: AACTAGGTGACTGTTACCTTGCGTGTTTTGTGGCCAAACCACCACCAAAAACCTCACACTGTGATGTGGTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017065.15 |
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| 3UTR GCA 72 bp | GTCCAACAGGACTCAAGATGTTCCCCACTTCTCTTGTaGTTTTATCAGTTGGTGTCGTTGCTATTCCACCCA | + |
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Preference number: 3 (lower is better) Translates to: VQQDSRCSPLLL*FYQLVSLLFHP Trigger: TGGGTGGAATAGCAACGACACCAACTGATAAAAGCACAAGAGAAGTGGGGAACATCTTGAGTCCTGTTGGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR GCA 72 bp | ACCAACCAATGTGTGCAGGATGGGATTCTTCAATTCTaGGCATTAGTTGGTAGGGAACTGAATTCACTCATC | + |
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Preference number: 3 (lower is better) Translates to: TNQCVQDGILQF*ALVGRELNSLI Trigger: GATGAGTGAATTCAGTTCCCTACCAACTAATGCGCAGAATTGAAGAATCCCATCCTGCACACATTGGTTGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR-3UTR CAA 90 bp | AGGAGTGGGAACATAAAAACTGAAGTAGGTAGGACTCAAACTGGCCATAAAGGCATGTCCTCTGATTATTaGGCCCTACAAACCAACTCT | + |
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Preference number: 3 (lower is better) Translates to: RSGNIKTEVGRTQTGHKGMSSDY*ALQTNS Trigger: AGAGTTGGTTTGTAGGGCCAAATAATCAGAGGACAT...GCCTTTATGGCCAGTTTGAGTCCTACCTACTTCAGTTTTTATGTTCCCACTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR-3UTR CAA 90 bp | AAATCAAATTCCGGTGTTCCCTTTTCAGGAAATCCTCTTAAAGAAGAGGCGAGTGTTAATCTCTGGAACTaGATCTGGACCTTGAACGAG | + |
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Preference number: 3 (lower is better) Translates to: KSNSGVPFSGNPLKEEASVNLWN*IWTLNE Trigger: CTCGTTCAAGGTCCAGATCAAGTTCCAGAGATTAAC...ACTCGCCTCTTCTTTAAGAGGATTTCCTGAAAAGGGAACACCGGAATTTGATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017065.15 |
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| 3UTR-3UTR CAA 90 bp | AGGAGTGGGAACATAAAAACTGAAGTAGGTAGGACTCAAACTGGCCATAAAGGCACTATTTATTTCACCTaGGTCTCCACAGCATTCATA | + |
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Preference number: 3 (lower is better) Translates to: RSGNIKTEVGRTQTGHKGTIYFT*VSTAFI Trigger: TATGAATGCTGTGGAGACCAAGGTGAAATAAATAGT...GCCTTTATGGCCAGTTTGAGTCCTACCTACTTCAGTTTTTATGTTCCCACTCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR TCA 72 bp | TATTTTCCACTCAGCCTTGCCTTATTGCATGTCCTCTaGTTATTTGGCCCTACAAACCAACTCTACGTTATA | + |
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Preference number: 3 (lower is better) Translates to: YFPLSLALLHVL*LFGPTNQLYVI Trigger: TATAACGTAGAGTTGGTTTGTAGGGCCAAATAATCAGAGGACATGCAATAAGGCAAGGCTGAGTGGAAAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR CCA 72 bp | CGGCCTTTGTCCCCACTAGAAAAACTGTATGGGTATTaGCATTTACCTATTCGTTATATATTTATGAGGGCA | + |
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Preference number: 3 (lower is better) Translates to: RPLSPLEKLYGY*HLPIRYIFMRA Trigger: TGCCCTCATAAATATATAACGAATAGGTAAATGCCAATACCCATACAGTTTTTCTAGTGGGGACAAAGGCCG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR CAA 72 bp | GCGAGTGGGACCGAGACTGGCTCCGGGATCTGGACTTaGACTTTATGTCTCCTTTGCCGTTCTCTTTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: ASGTETGSGIWT*TLCLLCRSLWG Trigger: CCCCCAAAGAGAACGGCAAAGGAGACATAAAGTCAAAGTCCAGATCCCGGAGCCAGTCTCGGTCCCACTCGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017065.15 |
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| CDS-3UTR CCA 90 bp | TTACACTGTCTCCACACATGGCAGGTATCAACACTTAAGGGCCTTAGTAGTGACGCAGGTAGAGGCGAGTaGGACCGAGACTGGCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: LHCLHTWQVSTLKGLSSDAGRGE*DRDWLR Trigger: CCGGAGCCAGTCTCGGTCCCACTCGCCTCTACCTGC...GTCACTACTAAGGCCCTTAAGTGTTGATACCTGCCATGTGTGGAGACAGTGTAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| CDS-3UTR TCA 90 bp | CACCCAGGGCACCAACCAATGTGTGCAGGATGGGATTCTTCAATTCTGCGCATTCTCCTGCTTGCCGCATaGAATCCTTTAAGTCTTGCC | + |
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Preference number: 4 (lower is better) Translates to: HPGHQPMCAGWDSSILRILLLAA*NPLSLA Trigger: GGCAAGACTTAAAGGATTTCATGCGGCAAGCAGGAG...AATGCGCAGAATTGAAGAATCCCATCCTGCACACATTGGTTGGTGCCCTGGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| CDS-3UTR TCA 90 bp | CACCCAGGGCACCAACCAATGTGTGCAGGATGGGATTCTTCAATTCTGCGCATTCCTTCTTCTAGACCGTaGTCTGGATCTACTGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: HPGHQPMCAGWDSSILRIPSSRP*SGSTAR Trigger: TCTGGCAGTAGATCCAGATCACGGTCTAGAAGAAGG...AATGCGCAGAATTGAAGAATCCCATCCTGCACACATTGGTTGGTGCCCTGGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| CDS-3UTR GCA 90 bp | TTACACTGTCTCCACACATGGCAGGTATCAACACTTAAGGGCCTTAGTAGTGACATCCACCTCCACCACTaGGGCTTCCGTAGCTGTAGC | + |
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Preference number: 4 (lower is better) Translates to: LHCLHTWQVSTLKGLSSDIHLHH*GFRSCS Trigger: GCTACAGCTACGGAAGCCGCAGTGGTGGAGGTGGAT...GTCACTACTAAGGCCCTTAAGTGTTGATACCTGCCATGTGTGGAGACAGTGTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR CAA 72 bp | CTGGACTTTGACTTTATGTCTCCTTTGCCGTTCTCTTaGGGGGACCGAGACCGTGACCTACTACGTGACTTC | + |
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Preference number: 4 (lower is better) Translates to: LDFDFMSPLPFS*GDRDRDLLRDF Trigger: GAAGTCACGTAGTAGGTCACGGTCTCGGTCCCCCAAAGAGAACGGCAAAGGAGACATAAAGTCAAAGTCCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017065.15 |
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| CDS-3UTR CCA 90 bp | CTGGGCTTGCGGATGTATGGAAACTGCAATCTAATTATTCCTACACATTTGCACCTTTGCCGTTCTCTTTaGGGGACCGAGACCGTGACC | + |
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Preference number: 4 (lower is better) Translates to: LGLRMYGNCNLIIPTHLHLCRSL*GTETVT Trigger: GGTCACGGTCTCGGTCCCCCAAAGAGAACGGCAAAG...GTGCAAATGTGTAGGAATAATTAGATTGCAGTTTCCATACATCCGCAAGCCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR CAA 72 bp | TCAAGATGTTCCCCACTTCTCTTGTGCTTTTATCAGTaGGTGTCGTTGCTATTCCACCCAGGGCACCAACCA | + |
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Preference number: 4 (lower is better) Translates to: SRCSPLLLCFYQ*VSLLFHPGHQP Trigger: TGGTTGGTGCCCTGGGTGGAATAGCAACGACACCAACTGATAAAAGCACAAGAGAAGTGGGGAACATCTTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| CDS-3UTR GCA 90 bp | CTATTCCACCCAGGGCACCAACCAATGTGTGCAGGATGGGATTCTTCAATTCTGACTTGGGCTTCGATTTaGTCTTTGATCTGGATTTCC | + |
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Preference number: 4 (lower is better) Translates to: LFHPGHQPMCAGWDSSILTWASI*SLIWIS Trigger: GGAAATCCAGATCAAAGAGCAAATCGAAGCCCAAGT...CAGAATTGAAGAATCCCATCCTGCACACATTGGTTGGTGCCCTGGGTGGAATAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| CDS-3UTR CCA 90 bp | AGGAGTGGGAACATAAAAACTGAAGTAGGTAGGACTCAAACTGGCCATAAAGGCACTGGCTCCGGGATCTaGACTTTGACTTTATGTCTC | + |
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Preference number: 4 (lower is better) Translates to: RSGNIKTEVGRTQTGHKGTGSGI*TLTLCL Trigger: GAGACATAAAGTCAAAGTCCAGATCCCGGAGCCAGT...GCCTTTATGGCCAGTTTGAGTCCTACCTACTTCAGTTTTTATGTTCCCACTCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| CDS-3UTR GCA 90 bp | TTACACTGTCTCCACACATGGCAGGTATCAACACTTAAGGGCCTTAGTAGTGACATAAGTCACTTCTCCTaGTTGCCGCATGAAATCCTT | + |
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Preference number: 4 (lower is better) Translates to: LHCLHTWQVSTLKGLSSDISHFS*LPHEIL Trigger: AAGGATTTCATGCGGCAAGCAGGAGAAGTGACTTAT...GTCACTACTAAGGCCCTTAAGTGTTGATACCTGCCATGTGTGGAGACAGTGTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| CDS-3UTR GCA 90 bp | AGGAGTGGGAACATAAAAACTGAAGTAGGTAGGACTCAAACTGGCCATAAAGGCTTCTTTGTGAGCATCTaGATAAGTCACTTCTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: RSGNIKTEVGRTQTGHKGFFVSI*ISHFSC Trigger: GCAGGAGAAGTGACTTATGCAGATGCTCACAAAGAA...GCCTTTATGGCCAGTTTGAGTCCTACCTACTTCAGTTTTTATGTTCCCACTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| CDS-3UTR TCA 90 bp | ATCAAAGAAAAGAAGACTAAAGCAGCAGCTTTGTTTGACACTATGTTCCTAAAGTCTAGAACGGGACCTTaGAGCTCTTTTTGGCGGAGG | + |
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Preference number: 4 (lower is better) Translates to: IKEKKTKAAALFDTMFLKSRTGP*SSFWRR Trigger: CCTCCGCCAAAAAGAGCTTCAAGGTCCCGTTCTAGA...CTTTAGGAACATAGTGTCAAACAAAGCTGCTGCTTTAGTCTTCTTTTCTTTGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR CAA 72 bp | ATGTACTACCACACTAACAGAAGGCAAGCCCAGCAGTaGCATGCAGTCAGAAAGTCAAATTTTACTATTAGC | + |
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Preference number: 4 (lower is better) Translates to: MYYHTNRRQAQQ*HAVRKSNFTIS Trigger: GCTAATAGTAAAATTTGACTTTCTGACTGCATGCAACTGCTGGGCTTGCCTTCTGTTAGTGTGGTAGTACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| CDS-3UTR TCA 90 bp | ATCAAAGAAAAGAAGACTAAAGCAGCAGCTTTGTTTGACACTATGTTCCTAAAGCCGGGATCTGGACTTTaGCTTTATGTCTCCTTTGCC | + |
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Preference number: 4 (lower is better) Translates to: IKEKKTKAAALFDTMFLKPGSGL*LYVSFA Trigger: GGCAAAGGAGACATAAAGTCAAAGTCCAGATCCCGG...CTTTAGGAACATAGTGTCAAACAAAGCTGCTGCTTTAGTCTTCTTTTCTTTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| 3UTR CAA 72 bp | ACGGCCTTTGTCCCCACTAGAAAAACTGTATGGGTATaGGCATTTACCTATTCGTTATATATTTATGAGGGC | + |
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Preference number: 4 (lower is better) Translates to: TAFVPTRKTVWV*AFTYSLYIYEG Trigger: GCCCTCATAAATATATAACGAATAGGTAAATGCCAATACCCATACAGTTTTTCTAGTGGGGACAAAGGCCGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| CDS-3UTR CAA 90 bp | CTATTCCACCCAGGGCACCAACCAATGTGTGCAGGATGGGATTCTTCAATTCTGGACTTTATGTCTCCTTaGCCGTTCTCTTTGGGGGAC | + |
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Preference number: 5 (lower is better) Translates to: LFHPGHQPMCAGWDSSILDFMSP*PFSLGD Trigger: GTCCCCCAAAGAGAACGGCAAAGGAGACATAAAGTC...CAGAATTGAAGAATCCCATCCTGCACACATTGGTTGGTGCCCTGGGTGGAATAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| CDS-3UTR CAA 90 bp | TTACACTGTCTCCACACATGGCAGGTATCAACACTTAAGGGCCTTAGTAGTGACACCTTGAAGCTCTTTTaGGCGGAGGGGACATGGACC | + |
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Preference number: 5 (lower is better) Translates to: LHCLHTWQVSTLKGLSSDTLKLF*AEGTWT Trigger: GGTCCATGTCCCCTCCGCCAAAAAGAGCTTCAAGGT...GTCACTACTAAGGCCCTTAAGTGTTGATACCTGCCATGTGTGGAGACAGTGTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| CDS-3UTR CAA 90 bp | CTGGGCTTGCGGATGTATGGAAACTGCAATCTAATTATTCCTACACATTTGCACGATCGGGATCGACCTTaGCTCCGAGACCTAGATCGG | + |
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Preference number: 5 (lower is better) Translates to: LGLRMYGNCNLIIPTHLHDRDRP*LRDLDR Trigger: CCGATCTAGGTCTCGGAGCAAAGGTCGATCCCGATC...GTGCAAATGTGTAGGAATAATTAGATTGCAGTTTCCATACATCCGCAAGCCCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| CDS-3UTR CAA 90 bp | CTGGGCTTGCGGATGTATGGAAACTGCAATCTAATTATTCCTACACATTTGCACACATGGACCGAGCCTTaGAGGGTGGAGCAGGTAGAG | + |
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Preference number: 5 (lower is better) Translates to: LGLRMYGNCNLIIPTHLHTWTEP*RVEQVE Trigger: CTCTACCTGCTCCACCCTCAAAGGCTCGGTCCATGT...GTGCAAATGTGTAGGAATAATTAGATTGCAGTTTCCATACATCCGCAAGCCCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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| CDS-3UTR CAA 90 bp | AAATCAAATTCCGGTGTTCCCTTTTCAGGAAATCCTCTTAAAGAAGAGGCGAGTTCCGGGATCTGGACTTaGACTTTATGTCTCCTTTGC | + |
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Preference number: 5 (lower is better) Translates to: KSNSGVPFSGNPLKEEASSGIWT*TLCLLC Trigger: GCAAAGGAGACATAAAGTCAAAGTCCAGATCCCGGA...ACTCGCCTCTTCTTTAAGAGGATTTCCTGAAAAGGGAACACCGGAATTTGATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130411.7 |
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