Pregenerated sensors for SRSF5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021134Ensembl transcript IDs: ENSMUST00000094693.11, ENSMUST00000110351.8, ENSMUST00000110352.10, ENSMUST00000110354.8, ENSMUST00000110356.3, ENSMUST00000138434.8
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CGAGACCGAGCCCGGGCATGTTCAATCGTCACCCTTTCACTGCAAAGTTCCTTCCATGGAAGCCGAGCGTaGTGGCGCACGCCTTTAATT | + |
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Preference number: 2 (lower is better) Translates to: RDRARACSIVTLSLQSSFHGSRA*WRTPLI Trigger: AATTAAAGGCGTGCGCCACCACGCTCGGCTTCCATG...GAAGGAACTTTGCAGTGAAAGGGTGACGATTGAACATGCCCGGGCTCGGTCTCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138434.8 |
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| 3UTR CAA 90 bp | CTTTACTTTAATGTCTATCTACAGCTGTTAATGGGCAAGACACCCTaGACCCTAACAAGTAAAACTCATATTAAGCCTTTATATACAAGC | + |
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Preference number: 2 (lower is better) Translates to: LYFNVYLQLLMGKTP*TLTSKTHIKPLYTS Trigger: GCTTGTATATAAAGGCTTAATATGAGTTTTACTTGTTAGGGTCAAGGGTGTCTTGCCCATTAACAGCTGTAGATAGACATTAAAGTAAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| 3UTR TCA 72 bp | AATTTAATCCCAGCACTCGGGAGGCAGACAGATTCCTaGGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTC | + |
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Preference number: 3 (lower is better) Translates to: NLIPALGRQTDS*VRGQPGLQSEF Trigger: GAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGGAATCTGTCTGCCTCCCGAGTGCTGGGATTAAATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138434.8 |
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| 3UTR CCA 72 bp | TTGGACGTGCATGCATTCTACAGCACATTAAGATCATaGAAGCCGAGCGTGGTGGCGCACGCCTTTAATTTA | + |
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Preference number: 3 (lower is better) Translates to: LDVHAFYSTLRS*KPSVVAHAFNL Trigger: TAAATTAAAGGCGTGCGCCACCACGCTCGGCTTCCATGATCTTAATGTGCTGTAGAATGCATGCACGTCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138434.8 |
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| 3UTR-3UTR CAA 90 bp | CATGTTCAATCGTCACCCTTTCACTGCAAAGTTCCTTCCCATCAAGTTCATAAACATCATCTGCATCCCTaGGGTCCTCAAATTCCTAAA | + |
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Preference number: 3 (lower is better) Translates to: HVQSSPFHCKVPSHQVHKHHLHP*GPQIPK Trigger: TTTAGGAATTTGAGGACCCAAGGGATGCAGATGATG...TTTATGAACTTGATGGGAAGGAACTTTGCAGTGAAAGGGTGACGATTGAACATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138434.8 |
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| CDS-3UTR CCA 90 bp | CCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCCGGGATCGGGACCTCTaGCGATCCACAGATGCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: PLGGPHLQRNPAQPPPNPRDRDL*RSTDAG Trigger: TCCAGCATCTGTGGATCGCCAGAGGTCCCGATCCCG...GGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR TCA 90 bp | CCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCATTGCCACTGTCAACTaGTCTGGACCTGGACCGGGA | + |
|
Preference number: 4 (lower is better) Translates to: PLGGPHLQRNPAQPPPNPIATVN*SGPGPG Trigger: TCCCGGTCCAGGTCCAGATCAGTTGACAGTGGCAAT...GGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CCA 90 bp | CAACCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCGGGATCGGGACCTCTaGCGATCCACAGATGCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: QPLGGPHLQRNPAQPPPNRDRDL*RSTDAG Trigger: TCCAGCATCTGTGGATCGCCAGAGGTCCCGATCCCG...ATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGGTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CCA 90 bp | TTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCCCAACTGATCTGGACCTaGACCGGGATCGGGACCTCT | + |
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Preference number: 4 (lower is better) Translates to: LVVHIYKEIQPNPLQIPPQLIWT*TGIGTS Trigger: AGAGGTCCCGATCCCGGTCCAGGTCCAGATCAGTTG...GGGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CCA 90 bp | CTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCCAACTGATCTGGACCTaGACCGGGATCGGGACCTCT | + |
|
Preference number: 4 (lower is better) Translates to: LGGPHLQRNPAQPPPNPTQLIWT*TGIGTS Trigger: AGAGGTCCCGATCCCGGTCCAGGTCCAGATCAGTTG...GGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CCA 90 bp | CTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCCACTGTCAACTGATCTaGACCTGGACCGGGATCGGG | + |
|
Preference number: 4 (lower is better) Translates to: LGGPHLQRNPAQPPPNPTHCQLI*TWTGIG Trigger: CCCGATCCCGGTCCAGGTCCAGATCAGTTGACAGTG...GGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CCA 90 bp | TTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCCCACTGTCAACTGATCTaGACCTGGACCGGGATCGGG | + |
|
Preference number: 4 (lower is better) Translates to: LVVHIYKEIQPNPLQIPPHCQLI*TWTGIG Trigger: CCCGATCCCGGTCCAGGTCCAGATCAGTTGACAGTG...GGGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR TCA 90 bp | CTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCATTGCCACTGTCAACTaGTCTGGACCTGGACCGGGA | + |
|
Preference number: 4 (lower is better) Translates to: LGGPHLQRNPAQPPPNPTIATVN*SGPGPG Trigger: TCCCGGTCCAGGTCCAGATCAGTTGACAGTGGCAAT...GGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR TCA 90 bp | TTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCCATTGCCACTGTCAACTaGTCTGGACCTGGACCGGGA | + |
|
Preference number: 4 (lower is better) Translates to: LVVHIYKEIQPNPLQIPPIATVN*SGPGPG Trigger: TCCCGGTCCAGGTCCAGATCAGTTGACAGTGGCAAT...GGGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CCA 90 bp | CAACCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCAACTGATCTGGACCTaGACCGGGATCGGGACCTCT | + |
|
Preference number: 4 (lower is better) Translates to: QPLGGPHLQRNPAQPPPNQLIWT*TGIGTS Trigger: AGAGGTCCCGATCCCGGTCCAGGTCCAGATCAGTTG...ATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGGTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR TCA 90 bp | CAACCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATATTGCCACTGTCAACTaGTCTGGACCTGGACCGGGA | + |
|
Preference number: 4 (lower is better) Translates to: QPLGGPHLQRNPAQPPPNIATVN*SGPGPG Trigger: TCCCGGTCCAGGTCCAGATCAGTTGACAGTGGCAAT...ATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGGTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR GCA 90 bp | CCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCTGCTTCTTGACCTaGTGTGCCTTTTGCTGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: PLGGPHLQRNPAQPPPNPTCFLT*CAFCCL Trigger: AAGGCAGCAAAAGGCACAGCAGGTCAAGAAGCAGGT...GGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000110351.8 ENSMUST00000110354.8 |
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| CDS-3UTR CCA 90 bp | CCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCGAAGAACCACGTTTCTaGCTCTTCTCAGGCACAGGA | + |
|
Preference number: 4 (lower is better) Translates to: PLGGPHLQRNPAQPPPNPEEPRF*LFSGTG Trigger: TCCTGTGCCTGAGAAGAGCCAGAAACGTGGTTCTTC...GGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR TCA 90 bp | CCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCGATTTAGTCTCCCAATaGACACTCGACAGCCACTCA | + |
|
Preference number: 4 (lower is better) Translates to: PLGGPHLQRNPAQPPPNPDLVSQ*TLDSHS Trigger: TGAGTGGCTGTCGAGTGTTCATTGGGAGACTAAATC...GGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR GCA 90 bp | CTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCACCTGCTTCTTGACCTaGTGTGCCTTTTGCTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: LGGPHLQRNPAQPPPNPTTCFLT*CAFCCL Trigger: AAGGCAGCAAAAGGCACAGCAGGTCAAGAAGCAGGT...GGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000110351.8 ENSMUST00000110354.8 |
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| CDS-3UTR CCA 90 bp | TTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCCGAAGAACCACGTTTCTaGCTCTTCTCAGGCACAGGA | + |
|
Preference number: 4 (lower is better) Translates to: LVVHIYKEIQPNPLQIPPEEPRF*LFSGTG Trigger: TCCTGTGCCTGAGAAGAGCCAGAAACGTGGTTCTTC...GGGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CCA 90 bp | CTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCGAAGAACCACGTTTCTaGCTCTTCTCAGGCACAGGA | + |
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Preference number: 4 (lower is better) Translates to: LGGPHLQRNPAQPPPNPTEEPRF*LFSGTG Trigger: TCCTGTGCCTGAGAAGAGCCAGAAACGTGGTTCTTC...GGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR TCA 90 bp | CTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCGATTTAGTCTCCCAATaGACACTCGACAGCCACTCA | + |
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Preference number: 4 (lower is better) Translates to: LGGPHLQRNPAQPPPNPTDLVSQ*TLDSHS Trigger: TGAGTGGCTGTCGAGTGTTCATTGGGAGACTAAATC...GGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR TCA 90 bp | TTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCCGATTTAGTCTCCCAATaGACACTCGACAGCCACTCA | + |
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Preference number: 4 (lower is better) Translates to: LVVHIYKEIQPNPLQIPPDLVSQ*TLDSHS Trigger: TGAGTGGCTGTCGAGTGTTCATTGGGAGACTAAATC...GGGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR TCA 90 bp | CCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCTCCGTCCGTAACCCTTaGAGAATCTTTCCACATCTT | + |
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Preference number: 4 (lower is better) Translates to: PLGGPHLQRNPAQPPPNPSVRNP*RIFPHL Trigger: AAGATGTGGAAAGATTCTTCAAGGGTTACGGACGGA...GGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR GCA 90 bp | CCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCCTGGCGATCCACAGATaGTGGAGATTTAGATCTACT | + |
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Preference number: 4 (lower is better) Translates to: PLGGPHLQRNPAQPPPNPLAIHR*WRFRST Trigger: AGTAGATCTAAATCTCCAGCATCTGTGGATCGCCAG...GGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CCA 90 bp | CAACCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATGAAGAACCACGTTTCTaGCTCTTCTCAGGCACAGGA | + |
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Preference number: 4 (lower is better) Translates to: QPLGGPHLQRNPAQPPPNEEPRF*LFSGTG Trigger: TCCTGTGCCTGAGAAGAGCCAGAAACGTGGTTCTTC...ATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGGTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CCA 90 bp | CCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCGCGATCCACAGATGCTaGAGATTTAGATCTACTCGA | + |
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Preference number: 4 (lower is better) Translates to: PLGGPHLQRNPAQPPPNPAIHRC*RFRSTR Trigger: TCGAGTAGATCTAAATCTCCAGCATCTGTGGATCGC...GGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR TCA 90 bp | CAACCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATGATTTAGTCTCCCAATaGACACTCGACAGCCACTCA | + |
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Preference number: 4 (lower is better) Translates to: QPLGGPHLQRNPAQPPPNDLVSQ*TLDSHS Trigger: TGAGTGGCTGTCGAGTGTTCATTGGGAGACTAAATC...ATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGGTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR TCA 90 bp | CTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCTCCGTCCGTAACCCTTaGAGAATCTTTCCACATCTT | + |
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Preference number: 4 (lower is better) Translates to: LGGPHLQRNPAQPPPNPTSVRNP*RIFPHL Trigger: AAGATGTGGAAAGATTCTTCAAGGGTTACGGACGGA...GGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR TCA 90 bp | ACCGAGCCCGGGCATGTTCAATCGTCACCCTTTCACTGCAAAGTTCCTTCCCATTCCGTCCGTAACCCTTaGAGAATCTTTCCACATCTT | + |
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Preference number: 4 (lower is better) Translates to: TEPGHVQSSPFHCKVPSHSVRNP*RIFPHL Trigger: AAGATGTGGAAAGATTCTTCAAGGGTTACGGACGGA...ATGGGAAGGAACTTTGCAGTGAAAGGGTGACGATTGAACATGCCCGGGCTCGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138434.8 |
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| CDS-3UTR GCA 90 bp | CTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCTCGTCACCCTTTCACTaGAAAGTTCCTTCCCATCAA | + |
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Preference number: 4 (lower is better) Translates to: LGGPHLQRNPAQPPPNPTSSPFH*KVPSHQ Trigger: TTGATGGGAAGGAACTTTGCAGTGAAAGGGTGACGA...GGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR GCA 90 bp | TTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCCTCGTCACCCTTTCACTaGAAAGTTCCTTCCCATCAA | + |
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Preference number: 4 (lower is better) Translates to: LVVHIYKEIQPNPLQIPPSSPFH*KVPSHQ Trigger: TTGATGGGAAGGAACTTTGCAGTGAAAGGGTGACGA...GGGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR GCA 90 bp | CTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCCTGGCGATCCACAGATaGTGGAGATTTAGATCTACT | + |
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Preference number: 4 (lower is better) Translates to: LGGPHLQRNPAQPPPNPTLAIHR*WRFRST Trigger: AGTAGATCTAAATCTCCAGCATCTGTGGATCGCCAG...GGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR GCA 90 bp | TTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCCCTGGCGATCCACAGATaGTGGAGATTTAGATCTACT | + |
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Preference number: 4 (lower is better) Translates to: LVVHIYKEIQPNPLQIPPLAIHR*WRFRST Trigger: AGTAGATCTAAATCTCCAGCATCTGTGGATCGCCAG...GGGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR GCA 90 bp | CTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCCTTCTTGACCTGCTGTaGCTTTTGCTGCCTTCAATT | + |
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Preference number: 4 (lower is better) Translates to: LGGPHLQRNPAQPPPNPTLLDLL*LLLPSI Trigger: AATTGAAGGCAGCAAAAGGCACAGCAGGTCAAGAAG...GGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000110351.8 ENSMUST00000110354.8 |
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| CDS-3UTR CCA 90 bp | CTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCGCGATCCACAGATGCTaGAGATTTAGATCTACTCGA | + |
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Preference number: 4 (lower is better) Translates to: LGGPHLQRNPAQPPPNPTAIHRC*RFRSTR Trigger: TCGAGTAGATCTAAATCTCCAGCATCTGTGGATCGC...GGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CCA 90 bp | TTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCCGCGATCCACAGATGCTaGAGATTTAGATCTACTCGA | + |
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Preference number: 4 (lower is better) Translates to: LVVHIYKEIQPNPLQIPPAIHRC*RFRSTR Trigger: TCGAGTAGATCTAAATCTCCAGCATCTGTGGATCGC...GGGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR TCA 90 bp | CAACCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATTCCGTCCGTAACCCTTaGAGAATCTTTCCACATCTT | + |
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Preference number: 4 (lower is better) Translates to: QPLGGPHLQRNPAQPPPNSVRNP*RIFPHL Trigger: AAGATGTGGAAAGATTCTTCAAGGGTTACGGACGGA...ATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR GCA 90 bp | TTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCCATAAACAGCATCATCTaGATCCCTTGGGTCCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: LVVHIYKEIQPNPLQIPPINSII*IPWVLK Trigger: TTTGAGGACCCAAGGGATGCAGATGATGCTGTTTAT...GGGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR GCA 90 bp | CTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCATAAACAGCATCATCTaGATCCCTTGGGTCCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: LGGPHLQRNPAQPPPNPTINSII*IPWVLK Trigger: TTTGAGGACCCAAGGGATGCAGATGATGCTGTTTAT...GGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR GCA 90 bp | CAACCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCTTCTTGACCTGCTGTaGCTTTTGCTGCCTTCAATT | + |
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Preference number: 4 (lower is better) Translates to: QPLGGPHLQRNPAQPPPNLLDLL*LLLPSI Trigger: AATTGAAGGCAGCAAAAGGCACAGCAGGTCAAGAAG...ATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000110351.8 ENSMUST00000110354.8 |
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| CDS-3UTR GCA 90 bp | CAACCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATATAAACAGCATCATCTaGATCCCTTGGGTCCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: QPLGGPHLQRNPAQPPPNINSII*IPWVLK Trigger: TTTGAGGACCCAAGGGATGCAGATGATGCTGTTTAT...ATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGGTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CCA 90 bp | CTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCTTCTGTTCTTACAGGTaGAGCATTTCGTCTATCATT | + |
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Preference number: 4 (lower is better) Translates to: LGGPHLQRNPAQPPPNPTFCSYR*SISSII Trigger: AATGATAGACGAAATGCTCCACCTGTAAGAACAGAA...GGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR TCA 90 bp | CTCAAATTCCTAAAATGTAGCAGTAAGAGTAGAGCTTTTGGACGTGCATGCATTGATTTAGTCTCCCAATaGACACTCGACAGCCACTCA | + |
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Preference number: 4 (lower is better) Translates to: LKFLKCSSKSRAFGRACIDLVSQ*TLDSHS Trigger: TGAGTGGCTGTCGAGTGTTCATTGGGAGACTAAATC...AATGCATGCACGTCCAAAAGCTCTACTCTTACTGCTACATTTTAGGAATTTGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138434.8 |
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| 3UTR CAA 72 bp | AATGTCTATCTACAGCTGTTAATGGGCAAGACACCCTaGACCCTAACAAGTAAAACTCATATTAAGCCTTTA | + |
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Preference number: 4 (lower is better) Translates to: NVYLQLLMGKTP*TLTSKTHIKPL Trigger: TAAAGGCTTAATATGAGTTTTACTTGTTAGGGTCAAGGGTGTCTTGCCCATTAACAGCTGTAGATAGACATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS GCA 90 bp | CAGGAGACCTACTACCAGAACGGGACTTGCTCCGGCTCCGGCTCCTaGTCCTTGATCGGCTGTAAGACTTGCTCCTTCGTGAACGGGATC | + |
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Preference number: 5 (lower is better) Translates to: QETYYQNGTCSGSGS*SLIGCKTCSFVNGI Trigger: GATCCCGTTCACGAAGGAGCAAGTCTTACAGCCGATCAAGGAGCAGGAGCCGGAGCCGGAGCAAGTCCCGTTCTGGTAGTAGGTCTCCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS GCA 90 bp | TCTGGCTCTTCTCAGGCACAGGAGACCTACTACCAGAACGGGACTTaGTCCGGCTCCGGCTCCTGCTCCTTGATCGGCTGTAAGACTTGC | + |
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Preference number: 5 (lower is better) Translates to: SGSSQAQETYYQNGT*SGSGSCSLIGCKTC Trigger: GCAAGTCTTACAGCCGATCAAGGAGCAGGAGCCGGAGCCGGAGCAAGTCCCGTTCTGGTAGTAGGTCTCCTGTGCCTGAGAAGAGCCAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CAA 90 bp | CCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCTCCGGCTCCTGCTCCTaGATCGGCTGTAAGACTTGC | + |
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Preference number: 5 (lower is better) Translates to: PLGGPHLQRNPAQPPPNPSGSCS*IGCKTC Trigger: GCAAGTCTTACAGCCGATCAAGGAGCAGGAGCCGGA...GGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CAA 90 bp | CTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCTCCGGCTCCTGCTCCTaGATCGGCTGTAAGACTTGC | + |
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Preference number: 5 (lower is better) Translates to: LGGPHLQRNPAQPPPNPTSGSCS*IGCKTC Trigger: GCAAGTCTTACAGCCGATCAAGGAGCAGGAGCCGGA...GGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CAA 90 bp | TTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCCTCCGGCTCCTGCTCCTaGATCGGCTGTAAGACTTGC | + |
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Preference number: 5 (lower is better) Translates to: LVVHIYKEIQPNPLQIPPSGSCS*IGCKTC Trigger: GCAAGTCTTACAGCCGATCAAGGAGCAGGAGCCGGA...GGGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS CCA 90 bp | TCTGGACCTGGACCGGGATCGGGACCTCTGGCGATCCACAGATGCTaGAGATTTAGATCTACTCGAAGAACCACGTTTCTGGCTCTTCTC | + |
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Preference number: 5 (lower is better) Translates to: SGPGPGSGPLAIHRC*RFRSTRRTTFLALL Trigger: GAGAAGAGCCAGAAACGTGGTTCTTCGAGTAGATCTAAATCTCCAGCATCTGTGGATCGCCAGAGGTCCCGATCCCGGTCCAGGTCCAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CAA 90 bp | CAACCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATTCCGGCTCCTGCTCCTaGATCGGCTGTAAGACTTGC | + |
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Preference number: 5 (lower is better) Translates to: QPLGGPHLQRNPAQPPPNSGSCS*IGCKTC Trigger: GCAAGTCTTACAGCCGATCAAGGAGCAGGAGCCGGA...ATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGGTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CAA 90 bp | TTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCCATCGTGACCTGCTTCTaGACCTGTGCCTTTTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: LVVHIYKEIQPNPLQIPPIVTCF*TCAFCC Trigger: GCAGCAAAAGGCACAGGTCAAGAAGCAGGTCACGAT...GGGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000094693.11 ENSMUST00000110352.10 ENSMUST00000110356.3 |
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| CDS-3UTR CAA 90 bp | CTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCATCGTGACCTGCTTCTaGACCTGTGCCTTTTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: LGGPHLQRNPAQPPPNPTIVTCF*TCAFCC Trigger: GCAGCAAAAGGCACAGGTCAAGAAGCAGGTCACGAT...GGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000094693.11 ENSMUST00000110352.10 ENSMUST00000110356.3 |
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| CDS-3UTR CAA 90 bp | TTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCCATCGTGACCTGCTTCTaGACCTGCTGTGCCTTTTGC | + |
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Preference number: 5 (lower is better) Translates to: LVVHIYKEIQPNPLQIPPIVTCF*TCCAFC Trigger: GCAAAAGGCACAGCAGGTCAAGAAGCAGGTCACGAT...GGGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000110351.8 ENSMUST00000110354.8 |
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| CDS-3UTR CAA 90 bp | CCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCCATCATCTGCATCCCTaGGGTCCTCAAATTCCACAA | + |
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Preference number: 5 (lower is better) Translates to: PLGGPHLQRNPAQPPPNPHHLHP*GPQIPQ Trigger: TTGTGGAATTTGAGGACCCAAGGGATGCAGATGATG...GGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CAA 90 bp | CAACCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATATCGTGACCTGCTTCTaGACCTGCTGTGCCTTTTGC | + |
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Preference number: 5 (lower is better) Translates to: QPLGGPHLQRNPAQPPPNIVTCF*TCCAFC Trigger: GCAAAAGGCACAGCAGGTCAAGAAGCAGGTCACGAT...ATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGGTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000110351.8 ENSMUST00000110354.8 |
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| CDS-3UTR CAA 90 bp | TTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCCCATCATCTGCATCCCTaGGGTCCTCAAATTCCACAA | + |
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Preference number: 5 (lower is better) Translates to: LVVHIYKEIQPNPLQIPPHHLHP*GPQIPQ Trigger: TTGTGGAATTTGAGGACCCAAGGGATGCAGATGATG...GGGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CAA 90 bp | CCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCGGTTACTTCCCCAGCTaGTCTCATGAAATCTTTGAG | + |
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Preference number: 5 (lower is better) Translates to: PLGGPHLQRNPAQPPPNPGYFPS*SHEIFE Trigger: CTCAAAGATTTCATGAGACAAGCTGGGGAAGTAACC...GGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS CCA 90 bp | TCCACAGATGCTGGAGATTTAGATCTACTCGAAGAACCACGTTTCTaGCTCTTCTCAGGCACAGGAGACCTACTACCAGAACGGGACTTG | + |
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Preference number: 5 (lower is better) Translates to: STDAGDLDLLEEPRF*LFSGTGDLLPERDL Trigger: CAAGTCCCGTTCTGGTAGTAGGTCTCCTGTGCCTGAGAAGAGCCAGAAACGTGGTTCTTCGAGTAGATCTAAATCTCCAGCATCTGTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CAA 90 bp | CAACCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCATCATCTGCATCCCTaGGGTCCTCAAATTCCACAA | + |
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Preference number: 5 (lower is better) Translates to: QPLGGPHLQRNPAQPPPNHHLHP*GPQIPQ Trigger: TTGTGGAATTTGAGGACCCAAGGGATGCAGATGATG...ATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGGTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CAA 90 bp | CTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCTGTCTCATGAAATCTTaGAGATCCTGCCAGCTGACT | + |
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Preference number: 5 (lower is better) Translates to: LGGPHLQRNPAQPPPNPTCLMKS*RSCQLT Trigger: AGTCAGCTGGCAGGATCTCAAAGATTTCATGAGACA...GGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CAA 90 bp | CTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATCCCACCGGTTACTTCCCCAGCTaGTCTCATGAAATCTTTGAG | + |
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Preference number: 5 (lower is better) Translates to: LGGPHLQRNPAQPPPNPTGYFPS*SHEIFE Trigger: CTCAAAGATTTCATGAGACAAGCTGGGGAAGTAACC...GGTGGGATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS-3UTR CAA 90 bp | CAACCCCTTGGTGGTCCACATCTACAAAGAAATCCAGCCCAACCCCCTCCAAATTGTCTCATGAAATCTTaGAGATCCTGCCAGCTGACT | + |
|
Preference number: 5 (lower is better) Translates to: QPLGGPHLQRNPAQPPPNCLMKS*RSCQLT Trigger: AGTCAGCTGGCAGGATCTCAAAGATTTCATGAGACA...ATTTGGAGGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS CAA 72 bp | CAGAACGGGACTTGCTCCGGCTCCGGCTCCTGCTCCTaGATCGGCTGTAAGACTTGCTCCTTCGTGAACGGG | + |
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Preference number: 6 (lower is better) Translates to: QNGTCSGSGSCS*IGCKTCSFVNG Trigger: CCCGTTCACGAAGGAGCAAGTCTTACAGCCGATCAAGGAGCAGGAGCCGGAGCCGGAGCAAGTCCCGTTCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS CAA 90 bp | ACCTACTACCAGAACGGGACTTGCTCCGGCTCCGGCTCCTGCTCCTaGATCGGCTGTAAGACTTGCTCCTTCGTGAACGGGATCGGCTAC | + |
|
Preference number: 6 (lower is better) Translates to: TYYQNGTCSGSGSCS*IGCKTCSFVNGIGY Trigger: GTAGCCGATCCCGTTCACGAAGGAGCAAGTCTTACAGCCGATCAAGGAGCAGGAGCCGGAGCCGGAGCAAGTCCCGTTCTGGTAGTAGGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS GCA 72 bp | CCTGGACCGGGATCGGGACCTCTGGCGATCCACAGATaGTGGAGATTTAGATCTACTCGAAGAACCACGTTT | + |
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Preference number: 6 (lower is better) Translates to: PGPGSGPLAIHR*WRFRSTRRTTF Trigger: AAACGTGGTTCTTCGAGTAGATCTAAATCTCCAGCATCTGTGGATCGCCAGAGGTCCCGATCCCGGTCCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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| CDS CCA 72 bp | GGACCGGGATCGGGACCTCTGGCGATCCACAGATGCTaGAGATTTAGATCTACTCGAAGAACCACGTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: GPGSGPLAIHRC*RFRSTRRTTFL Trigger: CAGAAACGTGGTTCTTCGAGTAGATCTAAATCTCCAGCATCTGTGGATCGCCAGAGGTCCCGATCCCGGTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094693.11 ENSMUST00000110351.8 ENSMUST00000110352.10 ENSMUST00000110354.8 ENSMUST00000110356.3 |
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