Pregenerated sensors for SRSF3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071172Ensembl transcript IDs: ENSMUST00000037776.16, ENSMUST00000130216.3, ENSMUST00000233010.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCTGAGAGAAAACAGCATGCTCGGGAACCAAAGGGCGGTGCAACCTaGCGACTGGCCAGCCTGGGTCATGTGAAACGACACCAGCCAAGC | + |
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Preference number: 1 (lower is better) Translates to: AERKQHAREPKGGAT*RLASLGHVKRHQPS Trigger: GCTTGGCTGGTGTCGTTTCACATGACCCAGGCTGGCCAGTCGTCAGGTTGCACCGCCCTTTGGTTCCCGAGCATGCTGTTTTCTCTCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000233010.2 |
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| 3UTR CCA 90 bp | GATTGGCCAGGAATGTGTGGGCGGTCGAGGTGGCTGCTGCCGATTTaGTTAAGGTTGGAGAGAAGGCTGAGAGAAAACAGCATGCTCGGG | + |
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Preference number: 1 (lower is better) Translates to: DWPGMCGRSRWLLPI*LRLERRLRENSMLG Trigger: CCCGAGCATGCTGTTTTCTCTCAGCCTTCTCTCCAACCTTAACCAAATCGGCAGCAGCCACCTCGACCGCCCACACATTCCTGGCCAATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000233010.2 |
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| 3UTR TCA 90 bp | TGCCGGAGAATAGTTTTGGGTTTCAACAAGCTAGAAATGGTGAGGTaGGGCTGCCGGACTGACGGCCAGGAAGAATTTGCTGAAAAGGTT | + |
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Preference number: 1 (lower is better) Translates to: CRRIVLGFNKLEMVR*GCRTDGQEEFAEKV Trigger: AACCTTTTCAGCAAATTCTTCCTGGCCGTCAGTCCGGCAGCCTCACCTCACCATTTCTAGCTTGTTGAAACCCAAAACTATTCTCCGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233010.2 |
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| 3UTR CCA 90 bp | CCCCATAGAGAAACCAGGAAGGAACCCCTTTGCAAATCTTCAGTGTaGTTCCTACCCTTATCTGTTGGCTTGTGTTCACAGCAGCTCTTA | + |
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Preference number: 1 (lower is better) Translates to: PHRETRKEPLCKSSV*FLPLSVGLCSQQLL Trigger: TAAGAGCTGCTGTGAACACAAGCCAACAGATAAGGGTAGGAACCACACTGAAGATTTGCAAAGGGGTTCCTTCCTGGTTTCTCTATGGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000130216.3 |
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| 3UTR GCA 90 bp | ACAATAGCTCTGCATCCCCATAGAGAAACCAGGAAGGAACCCCTTTaGAAATCTTCAGTGTGGTTCCTACCCTTATCTGTTGGCTTGTGT | + |
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Preference number: 1 (lower is better) Translates to: TIALHPHRETRKEPL*KSSVWFLPLSVGLC Trigger: ACACAAGCCAACAGATAAGGGTAGGAACCACACTGAAGATTTGCAAAGGGGTTCCTTCCTGGTTTCTCTATGGGGATGCAGAGCTATTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000130216.3 |
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| 3UTR CCA 90 bp | GGAACCCCTTTGCAAATCTTCAGTGTGGTTCCTACCCTTATCTGTTaGCTTGTGTTCACAGCAGCTCTTAAACACCGCTTTATCATTCCA | + |
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Preference number: 1 (lower is better) Translates to: GTPLQIFSVVPTLIC*LVFTAALKHRFIIP Trigger: TGGAATGATAAAGCGGTGTTTAAGAGCTGCTGTGAACACAAGCCAACAGATAAGGGTAGGAACCACACTGAAGATTTGCAAAGGGGTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000130216.3 |
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| 3UTR-3UTR CCA 90 bp | AGAGAAAACAGCATGCTCGGGAACCAAAGGGCGGTGCAACCTGACGACTGGCCACTGAATGGGGCGCGCTaGTCACATGACGCTGAAAGG | + |
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Preference number: 2 (lower is better) Translates to: RENSMLGNQRAVQPDDWPLNGAR*SHDAER Trigger: CCTTTCAGCGTCATGTGACCAGCGCGCCCCATTCAG...TGGCCAGTCGTCAGGTTGCACCGCCCTTTGGTTCCCGAGCATGCTGTTTTCTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000233010.2 |
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| 3UTR CAA 90 bp | GGAATGTGTGGGCGGTCGAGGTGGCTGCTGCCGATTTGGTTAAGGTaGGAGAGAAGGCTGAGAGAAAACAGCATGCTCGGGAACCAAAGG | + |
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Preference number: 2 (lower is better) Translates to: GMCGRSRWLLPIWLR*ERRLRENSMLGNQR Trigger: CCTTTGGTTCCCGAGCATGCTGTTTTCTCTCAGCCTTCTCTCCAACCTTAACCAAATCGGCAGCAGCCACCTCGACCGCCCACACATTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000233010.2 |
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| 3UTR-3UTR TCA 90 bp | TGTTCACAGCAGCTCTTAAACACCGCTTTATCATTCCACCCACAGTGCCACAGTAAGGGCGGTGCAACCTaGCGACTGGCCAGCCTGGGT | + |
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Preference number: 2 (lower is better) Translates to: CSQQLLNTALSFHPQCHSKGGAT*RLASLG Trigger: ACCCAGGCTGGCCAGTCGTCAGGTTGCACCGCCCTT...ACTGTGGCACTGTGGGTGGAATGATAAAGCGGTGTTTAAGAGCTGCTGTGAACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037776.16 |
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| 3UTR-3UTR TCA 90 bp | CCAACTACTTTCCCAGGGATAAGAACAATGGCAACAGTGGTTCGCTCGACTGACCTAGAAATGGTGAGGTaGGGCTGCCGGACTGACGGC | + |
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Preference number: 2 (lower is better) Translates to: PTTFPGIRTMATVVRSTDLEMVR*GCRTDG Trigger: GCCGTCAGTCCGGCAGCCTCACCTCACCATTTCTAG...GTCAGTCGAGCGAACCACTGTTGCCATTGTTCTTATCCCTGGGAAAGTAGTTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037776.16 |
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| 3UTR-3UTR TCA 90 bp | GGGATTTTACATCATGATGGATCAATTTGGAATCCCATGCAACACCTCAAGTTACGACACCAGCCAAGCTaGATGGGGCGCGCTGGTCAC | + |
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Preference number: 2 (lower is better) Translates to: GILHHDGSIWNPMQHLKLRHQPS*MGRAGH Trigger: GTGACCAGCGCGCCCCATTCAGCTTGGCTGGTGTCG...TAACTTGAGGTGTTGCATGGGATTCCAAATTGATCCATCATGATGTAAAATCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037776.16 |
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| 3UTR-3UTR TCA 90 bp | GTGAATGTGCCGGAGAATAGTTTTGGGTTTCAACAAGCTAGAAATGGTGAGGTGCCAGCCTGGGTCATGTaGAACGACACCAGCCAAGCT | + |
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Preference number: 2 (lower is better) Translates to: VNVPENSFGFQQARNGEVPAWVM*NDTSQA Trigger: AGCTTGGCTGGTGTCGTTTCACATGACCCAGGCTGG...CACCTCACCATTTCTAGCTTGTTGAAACCCAAAACTATTCTCCGGCACATTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233010.2 |
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| 3UTR-3UTR GCA 90 bp | GGAAGGAACCCCTTTGCAAATCTTCAGTGTGGTTCCTACCCTTATCTGTTGGCTTCATTCCACCCACAGTaGCACAGTGTCTCAGCTACT | + |
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Preference number: 2 (lower is better) Translates to: GRNPFANLQCGSYPYLLASFHPQ*HSVSAT Trigger: AGTAGCTGAGACACTGTGGCACTGTGGGTGGAATGA...AGCCAACAGATAAGGGTAGGAACCACACTGAAGATTTGCAAAGGGGTTCCTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000130216.3 |
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| 3UTR-3UTR CCA 90 bp | TTCCCAGGGATAAGAACAATGGCAACAGTGGTTCGCTCGACTGACTACTACACATGGCTGCTGCCGATTTaGTTAAGGTTGGAGAGAAGG | + |
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Preference number: 2 (lower is better) Translates to: FPGIRTMATVVRSTDYYTWLLPI*LRLERR Trigger: CCTTCTCTCCAACCTTAACCAAATCGGCAGCAGCCA...TGTGTAGTAGTCAGTCGAGCGAACCACTGTTGCCATTGTTCTTATCCCTGGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037776.16 |
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| 3UTR-3UTR TCA 90 bp | GTGAATGTGCCGGAGAATAGTTTTGGGTTTCAACAAGCTAGAAATGGTGAGGTGGGTTGGAGAGAAGGCTaGGAGAAAACAGCATGCTCG | + |
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Preference number: 2 (lower is better) Translates to: VNVPENSFGFQQARNGEVGWREG*EKTACS Trigger: CGAGCATGCTGTTTTCTCTCAGCCTTCTCTCCAACC...CACCTCACCATTTCTAGCTTGTTGAAACCCAAAACTATTCTCCGGCACATTCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233010.2 |
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| 3UTR-3UTR CCA 90 bp | GAAGAATTTGCTGAAAAGGTTTTGCCAGATGTTGCGTTGGATTTAGTTGGTTGGTGTGGGCGGTCGAGGTaGCTGCTGCCGATTTGGTTA | + |
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Preference number: 2 (lower is better) Translates to: EEFAEKVLPDVALDLVGWCGRSR*LLPIWL Trigger: TAACCAAATCGGCAGCAGCCACCTCGACCGCCCACA...CCAACCAACTAAATCCAACGCAACATCTGGCAAAACCTTTTCAGCAAATTCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000233010.2 |
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| 3UTR CAA 90 bp | CCCCTTTGCAAATCTTCAGTGTGGTTCCTACCCTTATCTGTTGGCTaGTGTTCACAGCAGCTCTTAAACACCGCTTTATCATTCCACCCA | + |
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Preference number: 2 (lower is better) Translates to: PLCKSSVWFLPLSVG*CSQQLLNTALSFHP Trigger: TGGGTGGAATGATAAAGCGGTGTTTAAGAGCTGCTGTGAACACAAGCCAACAGATAAGGGTAGGAACCACACTGAAGATTTGCAAAGGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000130216.3 |
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| 3UTR-3UTR GCA 90 bp | ACAGCAGCTCTTAAACACCGCTTTATCATTCCACCCACAGTGCCACAGTGTCTCGGTTTTGCCAGATGTTaGGTTGGATTTAGTTGGTTG | + |
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Preference number: 2 (lower is better) Translates to: TAALKHRFIIPPTVPQCLGFARC*VGFSWL Trigger: CAACCAACTAAATCCAACGCAACATCTGGCAAAACC...GAGACACTGTGGCACTGTGGGTGGAATGATAAAGCGGTGTTTAAGAGCTGCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037776.16 |
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| 3UTR-3UTR CCA 90 bp | GTGAATGTGCCGGAGAATAGTTTTGGGTTTCAACAAGCTAGAAATGGTGAGGTGTGCGTTGGATTTAGTTaGTTGGCGAAGGGGGTGTTG | + |
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Preference number: 2 (lower is better) Translates to: VNVPENSFGFQQARNGEVCVGFS*LAKGVL Trigger: CAACACCCCCTTCGCCAACCAACTAAATCCAACGCA...CACCTCACCATTTCTAGCTTGTTGAAACCCAAAACTATTCTCCGGCACATTCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000233010.2 |
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| 3UTR-3UTR TCA 90 bp | CTAAGAGAAAGGATATGCATGCCTCCATTTCAACTGTGCATCATTACAATTAACCCAGCCTGGGTCATGTaGAACGACACCAGCCAAGCT | + |
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Preference number: 2 (lower is better) Translates to: LRERICMPPFQLCIITINPAWVM*NDTSQA Trigger: AGCTTGGCTGGTGTCGTTTCACATGACCCAGGCTGG...GTTAATTGTAATGATGCACAGTTGAAATGGAGGCATGCATATCCTTTCTCTTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037776.16 |
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| 3UTR-3UTR GCA 90 bp | CCAACTACTTTCCCAGGGATAAGAACAATGGCAACAGTGGTTCGCTCGACTGACTTGCTGAAAAGGTTTTaGCAGATGTTGCGTTGGATT | + |
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Preference number: 2 (lower is better) Translates to: PTTFPGIRTMATVVRSTDLLKRF*QMLRWI Trigger: AATCCAACGCAACATCTGGCAAAACCTTTTCAGCAA...GTCAGTCGAGCGAACCACTGTTGCCATTGTTCTTATCCCTGGGAAAGTAGTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037776.16 |
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| 3UTR-3UTR TCA 90 bp | GAATTTGCTGAAAAGGTTTTGCCAGATGTTGCGTTGGATTTAGTTGGTTGGCGAAATAAACAGCTGAGCTaGTTGGCCAGGAATGTGTGG | + |
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Preference number: 2 (lower is better) Translates to: EFAEKVLPDVALDLVGWRNKQLS*LARNVW Trigger: CCACACATTCCTGGCCAATCAGCTCAGCTGTTTATT...TCGCCAACCAACTAAATCCAACGCAACATCTGGCAAAACCTTTTCAGCAAATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000233010.2 |
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| 3UTR-3UTR CCA 90 bp | AACCAGGAAGGAACCCCTTTGCAAATCTTCAGTGTGGTTCCTACCCTTATCTGTAAAGCTTCTCCTTCTTaGGGATTAGTTTTGGGTTTC | + |
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Preference number: 2 (lower is better) Translates to: NQEGTPLQIFSVVPTLICKASPS*GLVLGF Trigger: GAAACCCAAAACTAATCCCCAAGAAGGAGAAGCTTT...ACAGATAAGGGTAGGAACCACACTGAAGATTTGCAAAGGGGTTCCTTCCTGGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037776.16 |
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| 3UTR-3UTR GCA 90 bp | CTGAAAGGACACTGGCATCTGAGTTTTACATTTCCAAATAAAGACGTTACAATAAGGAAGGAACCCCTTTaGAAATCTTCAGTGTGGTTC | + |
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Preference number: 2 (lower is better) Translates to: LKGHWHLSFTFPNKDVTIRKEPL*KSSVWF Trigger: GAACCACACTGAAGATTTGCAAAGGGGTTCCTTCCT...TATTGTAACGTCTTTATTTGGAAATGTAAAACTCAGATGCCAGTGTCCTTTCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000130216.3 |
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| 3UTR-3UTR CCA 90 bp | GGGATTTTACATCATGATGGATCAATTTGGAATCCCATGCAACACCTCAAGTTATGCAAATCTTCAGTGTaGTTCCTACCCTTATCTGTT | + |
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Preference number: 2 (lower is better) Translates to: GILHHDGSIWNPMQHLKLCKSSV*FLPLSV Trigger: AACAGATAAGGGTAGGAACCACACTGAAGATTTGCA...TAACTTGAGGTGTTGCATGGGATTCCAAATTGATCCATCATGATGTAAAATCCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000130216.3 |
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| 3UTR TCA 72 bp | GCGGTGCAACCTGACGACTGGCCAGCCTGGGTCATGTaGAACGACACCAGCCAAGCTGAATGGGGCGCGCTG | + |
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Preference number: 3 (lower is better) Translates to: AVQPDDWPAWVM*NDTSQAEWGAL Trigger: CAGCGCGCCCCATTCAGCTTGGCTGGTGTCGTTTCACATGACCCAGGCTGGCCAGTCGTCAGGTTGCACCGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000233010.2 |
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| 3UTR TCA 72 bp | GCCAGCCTGGGTCATGTGAAACGACACCAGCCAAGCTaGATGGGGCGCGCTGGTCACATGACGCTGAAAGGG | + |
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Preference number: 3 (lower is better) Translates to: ASLGHVKRHQPS*MGRAGHMTLKG Trigger: CCCTTTCAGCGTCATGTGACCAGCGCGCCCCATTCAGCTTGGCTGGTGTCGTTTCACATGACCCAGGCTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000233010.2 |
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| 3UTR TCA 72 bp | AAACAGCATGCTCGGGAACCAAAGGGCGGTGCAACCTaGCGACTGGCCAGCCTGGGTCATGTGAAACGACAC | + |
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Preference number: 3 (lower is better) Translates to: KQHAREPKGGAT*RLASLGHVKRH Trigger: GTGTCGTTTCACATGACCCAGGCTGGCCAGTCGTCAGGTTGCACCGCCCTTTGGTTCCCGAGCATGCTGTTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000233010.2 |
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| 3UTR CCA 72 bp | GGAATGTGTGGGCGGTCGAGGTGGCTGCTGCCGATTTaGTTAAGGTTGGAGAGAAGGCTGAGAGAAAACAGC | + |
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Preference number: 3 (lower is better) Translates to: GMCGRSRWLLPI*LRLERRLRENS Trigger: GCTGTTTTCTCTCAGCCTTCTCTCCAACCTTAACCAAATCGGCAGCAGCCACCTCGACCGCCCACACATTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000233010.2 |
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| 3UTR-3UTR CAA 90 bp | CCAACTACTTTCCCAGGGATAAGAACAATGGCAACAGTGGTTCGCTCGACTGACTTGGCGAAGGGGGTGTaGTGGATTTTTCCTGCTTTT | + |
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Preference number: 3 (lower is better) Translates to: PTTFPGIRTMATVVRSTDLAKGV*WIFPAF Trigger: AAAAGCAGGAAAAATCCACAACACCCCCTTCGCCAA...GTCAGTCGAGCGAACCACTGTTGCCATTGTTCTTATCCCTGGGAAAGTAGTTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000037776.16 |
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| 3UTR TCA 72 bp | TTAGTTTTGGGTTTCAACAAGCTAGAAATGGTGAGGTaGGGCTGCCGGACTGACGGCCAGGAAGAATTTGCT | + |
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Preference number: 3 (lower is better) Translates to: LVLGFNKLEMVR*GCRTDGQEEFA Trigger: AGCAAATTCTTCCTGGCCGTCAGTCCGGCAGCCTCACCTCACCATTTCTAGCTTGTTGAAACCCAAAACTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037776.16 |
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| 3UTR TCA 72 bp | ATAGTTTTGGGTTTCAACAAGCTAGAAATGGTGAGGTaGGGCTGCCGGACTGACGGCCAGGAAGAATTTGCT | + |
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Preference number: 3 (lower is better) Translates to: IVLGFNKLEMVR*GCRTDGQEEFA Trigger: AGCAAATTCTTCCTGGCCGTCAGTCCGGCAGCCTCACCTCACCATTTCTAGCTTGTTGAAACCCAAAACTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233010.2 |
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| 3UTR-3UTR CAA 90 bp | GAATTTGCTGAAAAGGTTTTGCCAGATGTTGCGTTGGATTTAGTTGGTTGGCGAGTGGCTGCTGCCGATTaGGTTAAGGTTGGAGAGAAG | + |
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Preference number: 3 (lower is better) Translates to: EFAEKVLPDVALDLVGWRVAAAD*VKVGEK Trigger: CTTCTCTCCAACCTTAACCAAATCGGCAGCAGCCAC...TCGCCAACCAACTAAATCCAACGCAACATCTGGCAAAACCTTTTCAGCAAATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000233010.2 |
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| 3UTR GCA 72 bp | CTGCATCCCCATAGAGAAACCAGGAAGGAACCCCTTTaGAAATCTTCAGTGTGGTTCCTACCCTTATCTGTT | + |
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Preference number: 3 (lower is better) Translates to: LHPHRETRKEPL*KSSVWFLPLSV Trigger: AACAGATAAGGGTAGGAACCACACTGAAGATTTGCAAAGGGGTTCCTTCCTGGTTTCTCTATGGGGATGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000130216.3 |
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| 3UTR CCA 72 bp | GAAACCAGGAAGGAACCCCTTTGCAAATCTTCAGTGTaGTTCCTACCCTTATCTGTTGGCTTGTGTTCACAG | + |
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Preference number: 3 (lower is better) Translates to: ETRKEPLCKSSV*FLPLSVGLCSQ Trigger: CTGTGAACACAAGCCAACAGATAAGGGTAGGAACCACACTGAAGATTTGCAAAGGGGTTCCTTCCTGGTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000130216.3 |
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| 3UTR CCA 72 bp | TTGCAAATCTTCAGTGTGGTTCCTACCCTTATCTGTTaGCTTGTGTTCACAGCAGCTCTTAAACACCGCTTT | + |
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Preference number: 3 (lower is better) Translates to: LQIFSVVPTLIC*LVFTAALKHRF Trigger: AAAGCGGTGTTTAAGAGCTGCTGTGAACACAAGCCAACAGATAAGGGTAGGAACCACACTGAAGATTTGCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000130216.3 |
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| 3UTR TCA 72 bp | CATTTCCCAACTTTTCAATTTCACTGTTGGGCCCAGTaGATGTGCCGGAGAATAGTTTTGGGTTTCAACAAG | + |
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Preference number: 3 (lower is better) Translates to: HFPTFQFHCWAQ*MCRRIVLGFNK Trigger: CTTGTTGAAACCCAAAACTATTCTCCGGCACATTCACTGGGCCCAACAGTGAAATTGAAAAGTTGGGAAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233010.2 |
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| 3UTR-3UTR CAA 90 bp | CTAAGAGAAAGGATATGCATGCCTCCATTTCAACTGTGCATCATTACAATTAACCAGGAAGGAACCCCTTaGCAAATCTTCAGTGTGGTT | + |
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Preference number: 3 (lower is better) Translates to: LRERICMPPFQLCIITINQEGTP*QIFSVV Trigger: AACCACACTGAAGATTTGCAAAGGGGTTCCTTCCTG...GTTAATTGTAATGATGCACAGTTGAAATGGAGGCATGCATATCCTTTCTCTTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000130216.3 |
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| 3UTR CCA 72 bp | AGTGCTTCTCAGTTGTGTTTCTTACAAAGAATGAACTaGGTAACCAACTACTTTCCCAGGGATAAGAACAAT | + |
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Preference number: 3 (lower is better) Translates to: SASQLCFLQRMN*VTNYFPRDKNN Trigger: ATTGTTCTTATCCCTGGGAAAGTAGTTGGTTACCCAGTTCATTCTTTGTAAGAAACACAACTGAGAAGCACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000130216.3 |
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| 3UTR TCA 72 bp | GTAAATGAAGAGAACCTACATTGTGTATGTAATATCTaGGGTTACCCATATTCTCAGGTGCCTTTCTTAATC | + |
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Preference number: 3 (lower is better) Translates to: VNEENLHCVCNI*GYPYSQVPFLI Trigger: GATTAAGAAAGGCACCTGAGAATATGGGTAACCTCAGATATTACATACACAATGTAGGTTCTCTTCATTTAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130216.3 |
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| 3UTR TCA 72 bp | ATCATTACAATTAACCATATTGGGGATTTTACATCATaGTGGATCAATTTGGAATCCCATGCAACACCTCAA | + |
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Preference number: 3 (lower is better) Translates to: IITINHIGDFTS*WINLESHATPQ Trigger: TTGAGGTGTTGCATGGGATTCCAAATTGATCCATCATGATGTAAAATCCCCAATATGGTTAATTGTAATGAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000130216.3 |
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| CDS-3UTR CCA 90 bp | GGAATGTGTGGGCGGTCGAGGTGGCTGCTGCCGATTTGGTTAAGGTTGGAGAGAGACTCTGCGCCGAGGTaGAGGACTCCTCCTGCGGTA | + |
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Preference number: 4 (lower is better) Translates to: GMCGRSRWLLPIWLRLERDSAPR*RTPPAV Trigger: TACCGCAGGAGGAGTCCTCCACCTCGGCGCAGAGTC...TCTCTCCAACCTTAACCAAATCGGCAGCAGCCACCTCGACCGCCCACACATTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037776.16 |
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| 3UTR CAA 72 bp | AGGAATGTGTGGGCGGTCGAGGTGGCTGCTGCCGATTaGGTTAAGGTTGGAGAGAAGGCTGAGAGAAAACAG | + |
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Preference number: 4 (lower is better) Translates to: RNVWAVEVAAAD*VKVGEKAERKQ Trigger: CTGTTTTCTCTCAGCCTTCTCTCCAACCTTAACCAAATCGGCAGCAGCCACCTCGACCGCCCACACATTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000233010.2 |
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| CDS-3UTR CCA 90 bp | AACCAGGAAGGAACCCCTTTGCAAATCTTCAGTGTGGTTCCTACCCTTATCTGTGGATCTGCGCCGAGGTaGAGGACTCCTCCTGCGGTA | + |
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Preference number: 4 (lower is better) Translates to: NQEGTPLQIFSVVPTLICGSAPR*RTPPAV Trigger: TACCGCAGGAGGAGTCCTCCACCTCGGCGCAGATCC...ACAGATAAGGGTAGGAACCACACTGAAGATTTGCAAAGGGGTTCCTTCCTGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130216.3 |
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| 3UTR CAA 72 bp | AAATCTTCAGTGTGGTTCCTACCCTTATCTGTTGGCTaGTGTTCACAGCAGCTCTTAAACACCGCTTTATCA | + |
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Preference number: 4 (lower is better) Translates to: KSSVWFLPLSVG*CSQQLLNTALS Trigger: TGATAAAGCGGTGTTTAAGAGCTGCTGTGAACACAAGCCAACAGATAAGGGTAGGAACCACACTGAAGATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037776.16 ENSMUST00000130216.3 |
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