Pregenerated sensors for SRSF2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034120Ensembl transcript IDs: ENSMUST00000092404.13, ENSMUST00000136914.8, ENSMUST00000176834.8, ENSMUST00000190993.7
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAGCCGCTTGCCGATTCATCTGCTCCAATACACGCCCACAGAAACTaGTCCCTGGAGGATCAGCCAAATCAGTTAAAATCTGCAATACTG | + |
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Preference number: 1 (lower is better) Translates to: KPLADSSAPIHAHRN*SLEDQPNQLKSAIL Trigger: CAGTATTGCAGATTTTAACTGATTTGGCTGATCCTCCAGGGACCAGTTTCTGTGGGCGTGTATTGGAGCAGATGAATCGGCAAGCGGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| 3UTR-3UTR TCA 90 bp | GACTCTTCCATGGACCGATGGACTGAGTTTGTGGTCCTTTCCCCCAATGTCCTCCATGGACCGATGGACTaGGTTTGTGGTCCTTTCCCC | + |
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Preference number: 2 (lower is better) Translates to: DSSMDRWTEFVVLSPNVLHGPMD*VCGPFP Trigger: GGGGAAAGGACCACAAACTCAGTCCATCGGTCCATG...GAGGACATTGGGGGAAAGGACCACAAACTCAGTCCATCGGTCCATGGAAGAGTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000176834.8 ENSMUST00000190993.7 |
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| 3UTR-3UTR TCA 90 bp | GGTCCTTTCCCCCAATGTCCTCTGTTAAGCCGCTTGCCGATTCATCTGCTCCAACATGGACCGATGGACTaGGTTTGTGGTCCTTTCCCC | + |
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Preference number: 2 (lower is better) Translates to: GPFPQCPLLSRLPIHLLQHGPMD*VCGPFP Trigger: GGGGAAAGGACCACAAACTCAGTCCATCGGTCCATG...TTGGAGCAGATGAATCGGCAAGCGGCTTAACAGAGGACATTGGGGGAAAGGACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| 3UTR-3UTR CCA 90 bp | TTTAATAGCCAGTTGCTTGTTCCAAGGACTCTTCCATGGACCGATGGACTGAGTCACGCCCACAGAAACTaGTCCCTGGAGGATCAGCCA | + |
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Preference number: 2 (lower is better) Translates to: FNSQLLVPRTLPWTDGLSHAHRN*SLEDQP Trigger: TGGCTGATCCTCCAGGGACCAGTTTCTGTGGGCGTG...ACTCAGTCCATCGGTCCATGGAAGAGTCCTTGGAACAAGCAACTGGCTATTAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| 3UTR-3UTR TCA 90 bp | TCAACTGCTACACAACTGCGCCTTTTTAATAGCCAGTTGCTTGTTCCAAGGACTCATGGACCGATGGACTaGGTTTGTGGTCCTTTCCCC | + |
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Preference number: 2 (lower is better) Translates to: STATQLRLFNSQLLVPRTHGPMD*VCGPFP Trigger: GGGGAAAGGACCACAAACTCAGTCCATCGGTCCATG...AGTCCTTGGAACAAGCAACTGGCTATTAAAAAGGCGCAGTTGTGTAGCAGTTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000136914.8 ENSMUST00000176834.8 ENSMUST00000190993.7 |
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| 3UTR-3UTR CCA 90 bp | CGCCTTTTTAATAGCCAGTTGCTTGTTCCAAGGACTCTTCCATGGACCGATGGAGATGGACTGAGTTTGTaGTCCTTTCCCCCAATGTCC | + |
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Preference number: 2 (lower is better) Translates to: RLFNSQLLVPRTLPWTDGDGLSL*SFPPMS Trigger: GGACATTGGGGGAAAGGACCACAAACTCAGTCCATC...TCCATCGGTCCATGGAAGAGTCCTTGGAACAAGCAACTGGCTATTAAAAAGGCG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000136914.8 ENSMUST00000176834.8 ENSMUST00000190993.7 |
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| 3UTR-3UTR CCA 90 bp | TTTAATAGCCAGTTGCTTGTTCCAAGGACTCTTCCATGGACCGATGGACTGAGTGATGGACTGAGTTTGTaGTCCTTTCCCCCAATGTCC | + |
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Preference number: 2 (lower is better) Translates to: FNSQLLVPRTLPWTDGLSDGLSL*SFPPMS Trigger: GGACATTGGGGGAAAGGACCACAAACTCAGTCCATC...ACTCAGTCCATCGGTCCATGGAAGAGTCCTTGGAACAAGCAACTGGCTATTAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000176834.8 ENSMUST00000190993.7 |
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| 3UTR-3UTR CCA 90 bp | ACACAACTGCGCCTTTTTAATAGCCAGTTGCTTGTTCCAAGGACTCTTCCATGGGATGGACTGAGTTTGTaGTCCTTTCCCCCAATGTCC | + |
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Preference number: 2 (lower is better) Translates to: TQLRLFNSQLLVPRTLPWDGLSL*SFPPMS Trigger: GGACATTGGGGGAAAGGACCACAAACTCAGTCCATC...CCATGGAAGAGTCCTTGGAACAAGCAACTGGCTATTAAAAAGGCGCAGTTGTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000136914.8 ENSMUST00000176834.8 ENSMUST00000190993.7 |
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| 3UTR-3UTR GCA 90 bp | TTTAATAGCCAGTTGCTTGTTCCAAGGACTCTTCCATGGACCGATGGACTGAGTTTTTTAATAGCCAGTTaGTTGTTCCAAGGACTCTTC | + |
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Preference number: 2 (lower is better) Translates to: FNSQLLVPRTLPWTDGLSFLIAS*LFQGLF Trigger: GAAGAGTCCTTGGAACAAGCAACTGGCTATTAAAAA...ACTCAGTCCATCGGTCCATGGAAGAGTCCTTGGAACAAGCAACTGGCTATTAAA 42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 4 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000176834.8 ENSMUST00000190993.7 |
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| 3UTR-3UTR CAA 90 bp | GACTCTTCCATGGACCGATGGACTGAGTTTGTGGTCCTTTCCCCCAATGTCCTCTTAATAGCCAGTTGCTaGTTCCAAGGACTCTTCCAT | + |
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Preference number: 3 (lower is better) Translates to: DSSMDRWTEFVVLSPNVLLIASC*FQGLFH Trigger: ATGGAAGAGTCCTTGGAACAAGCAACTGGCTATTAA...GAGGACATTGGGGGAAAGGACCACAAACTCAGTCCATCGGTCCATGGAAGAGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000176834.8 ENSMUST00000190993.7 |
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| 3UTR GCA 72 bp | CAACTGCTACACAACTGCGCCTTTTTAATAGCCAGTTaGTTGTTCCAAGGACTCTTCCATGGACCGATGGAC | + |
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Preference number: 3 (lower is better) Translates to: QLLHNCAFLIAS*LFQGLFHGPMD Trigger: GTCCATCGGTCCATGGAAGAGTCCTTGGAACAAGCAACTGGCTATTAAAAAGGCGCAGTTGTGTAGCAGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000136914.8 ENSMUST00000176834.8 ENSMUST00000190993.7 |
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| 3UTR CCA 72 bp | GCCGATTCATCTGCTCCAATACACGCCCACAGAAACTaGTCCCTGGAGGATCAGCCAAATCAGTTAAAATCT | + |
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Preference number: 3 (lower is better) Translates to: ADSSAPIHAHRN*SLEDQPNQLKS Trigger: AGATTTTAACTGATTTGGCTGATCCTCCAGGGACCAGTTTCTGTGGGCGTGTATTGGAGCAGATGAATCGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| 3UTR-3UTR CAA 90 bp | TTTAATAGCCAGTTGCTTGTTCCAAGGACTCTTCCATGGACCGATGGACTGAGTTTAATAGCCAGTTGCTaGTTCCAAGGACTCTTCCAT | + |
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Preference number: 3 (lower is better) Translates to: FNSQLLVPRTLPWTDGLSLIASC*FQGLFH Trigger: ATGGAAGAGTCCTTGGAACAAGCAACTGGCTATTAA...ACTCAGTCCATCGGTCCATGGAAGAGTCCTTGGAACAAGCAACTGGCTATTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000176834.8 ENSMUST00000190993.7 |
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| 3UTR-3UTR CAA 90 bp | CGCCTTTTTAATAGCCAGTTGCTTGTTCCAAGGACTCTTCCATGGACCGATGGACTTTTTAATAGCCAGTaGCTTGTTCCAAGGACTCTT | + |
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Preference number: 3 (lower is better) Translates to: RLFNSQLLVPRTLPWTDGLFNSQ*LVPRTL Trigger: AAGAGTCCTTGGAACAAGCAACTGGCTATTAAAAAG...TCCATCGGTCCATGGAAGAGTCCTTGGAACAAGCAACTGGCTATTAAAAAGGCG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000136914.8 ENSMUST00000176834.8 ENSMUST00000190993.7 |
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| CDS-3UTR GCA 90 bp | GACTCTTCCATGGACCGATGGACTGAGTTTGTGGTCCTTTCCCCCAATGTCCTCTGGAGCGCGAGCGAGTaGGGGACCGAGACTTGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: DSSMDRWTEFVVLSPNVLWSASE*GTETWS Trigger: GCTCCAAGTCTCGGTCCCGCACTCGCTCGCGCTCCA...GAGGACATTGGGGGAAAGGACCACAAACTCAGTCCATCGGTCCATGGAAGAGTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR CCA 90 bp | GACTCTTCCATGGACCGATGGACTGAGTTTGTGGTCCTTTCCCCCAATGTCCTCAGCCCCGGGACTCCTTaGTGTAGCGGTCCCGCGGAA | + |
|
Preference number: 4 (lower is better) Translates to: DSSMDRWTEFVVLSPNVLSPGTP*CSGPAE Trigger: TTCCGCGGGACCGCTACACCAAGGAGTCCCGGGGCT...GAGGACATTGGGGGAAAGGACCACAAACTCAGTCCATCGGTCCATGGAAGAGTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR CCA 90 bp | AGGACTCTTCCATGGACCGATGGACTGAGTTTGTGGTCCTTTCCCCCAATGTCCAGCCCCGGGACTCCTTaGTGTAGCGGTCCCGCGGAA | + |
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Preference number: 4 (lower is better) Translates to: RTLPWTDGLSLWSFPPMSSPGTP*CSGPAE Trigger: TTCCGCGGGACCGCTACACCAAGGAGTCCCGGGGCT...GGACATTGGGGGAAAGGACCACAAACTCAGTCCATCGGTCCATGGAAGAGTCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR GCA 90 bp | CAGTTGCTTGTTCCAAGGACTCTTCCATGGACCGATGGACTGAGTTTGTGGTCCTGGAGCGCGAGCGAGTaGGGGACCGAGACTTGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: QLLVPRTLPWTDGLSLWSWSASE*GTETWS Trigger: GCTCCAAGTCTCGGTCCCGCACTCGCTCGCGCTCCA...GGACCACAAACTCAGTCCATCGGTCCATGGAAGAGTCCTTGGAACAAGCAACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR TCA 90 bp | CCAATGTCCTCTGTTAAGCCGCTTGCCGATTCATCTGCTCCAATACACGCCCACTCTGGACTTGGAGGTTaGTCTGGAGCGCGAGCGAGT | + |
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Preference number: 4 (lower is better) Translates to: PMSSVKPLADSSAPIHAHSGLGG*SGARAS Trigger: ACTCGCTCGCGCTCCAGATCAACCTCCAAGTCCAGA...GTGGGCGTGTATTGGAGCAGATGAATCGGCAAGCGGCTTAACAGAGGACATTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR TCA 90 bp | GACTCTTCCATGGACCGATGGACTGAGTTTGTGGTCCTTTCCCCCAATGTCCTCTCTGGACTTGGAGGTTaGTCTGGAGCGCGAGCGAGT | + |
|
Preference number: 4 (lower is better) Translates to: DSSMDRWTEFVVLSPNVLSGLGG*SGARAS Trigger: ACTCGCTCGCGCTCCAGATCAACCTCCAAGTCCAGA...GAGGACATTGGGGGAAAGGACCACAAACTCAGTCCATCGGTCCATGGAAGAGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR CCA 90 bp | CAGTTGCTTGTTCCAAGGACTCTTCCATGGACCGATGGACTGAGTTTGTGGTCCACTTGGAGGTTGATCTaGAGCGCGAGCGAGTGCGGG | + |
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Preference number: 4 (lower is better) Translates to: QLLVPRTLPWTDGLSLWSTWRLI*SASECG Trigger: CCCGCACTCGCTCGCGCTCCAGATCAACCTCCAAGT...GGACCACAAACTCAGTCCATCGGTCCATGGAAGAGTCCTTGGAACAAGCAACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR CCA 90 bp | GACTCTTCCATGGACCGATGGACTGAGTTTGTGGTCCTTTCCCCCAATGTCCTCGGGCAGATCTGGACTTaGAGGTTGATCTGGAGCGCG | + |
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Preference number: 4 (lower is better) Translates to: DSSMDRWTEFVVLSPNVLGQIWT*RLIWSA Trigger: CGCGCTCCAGATCAACCTCCAAGTCCAGATCTGCCC...GAGGACATTGGGGGAAAGGACCACAAACTCAGTCCATCGGTCCATGGAAGAGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR CCA 90 bp | TTTAATAGCCAGTTGCTTGTTCCAAGGACTCTTCCATGGACCGATGGACTGAGTAGCCCCGGGACTCCTTaGTGTAGCGGTCCCGCGGAA | + |
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Preference number: 4 (lower is better) Translates to: FNSQLLVPRTLPWTDGLSSPGTP*CSGPAE Trigger: TTCCGCGGGACCGCTACACCAAGGAGTCCCGGGGCT...ACTCAGTCCATCGGTCCATGGAAGAGTCCTTGGAACAAGCAACTGGCTATTAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR CCA 90 bp | GGTCCTTTCCCCCAATGTCCTCTGTTAAGCCGCTTGCCGATTCATCTGCTCCAAATCTTCGGGCAGATCTaGACTTGGAGGTTGATCTGG | + |
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Preference number: 4 (lower is better) Translates to: GPFPQCPLLSRLPIHLLQIFGQI*TWRLIW Trigger: CCAGATCAACCTCCAAGTCCAGATCTGCCCGAAGAT...TTGGAGCAGATGAATCGGCAAGCGGCTTAACAGAGGACATTGGGGGAAAGGACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR CCA 90 bp | ACACAACTGCGCCTTTTTAATAGCCAGTTGCTTGTTCCAAGGACTCTTCCATGGGGGCAGATCTGGACTTaGAGGTTGATCTGGAGCGCG | + |
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Preference number: 4 (lower is better) Translates to: TQLRLFNSQLLVPRTLPWGQIWT*RLIWSA Trigger: CGCGCTCCAGATCAACCTCCAAGTCCAGATCTGCCC...CCATGGAAGAGTCCTTGGAACAAGCAACTGGCTATTAAAAAGGCGCAGTTGTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR CCA 90 bp | ATAACCTTTTTAATAGCCAGTTGCTTGTTCCAAGGACTCTTCCATGGACCGATGACTTGGAGGTTGATCTaGAGCGCGAGCGAGTGCGGG | + |
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Preference number: 4 (lower is better) Translates to: ITFLIASCLFQGLFHGPMTWRLI*SASECG Trigger: CCCGCACTCGCTCGCGCTCCAGATCAACCTCCAAGT...CATCGGTCCATGGAAGAGTCCTTGGAACAAGCAACTGGCTATTAAAAAGGTTAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092404.13 |
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| CDS-3UTR TCA 90 bp | ATAACCTTTTTAATAGCCAGTTGCTTGTTCCAAGGACTCTTCCATGGACCGATGTCTGGACTTGGAGGTTaGTCTGGAGCGCGAGCGAGT | + |
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Preference number: 4 (lower is better) Translates to: ITFLIASCLFQGLFHGPMSGLGG*SGARAS Trigger: ACTCGCTCGCGCTCCAGATCAACCTCCAAGTCCAGA...CATCGGTCCATGGAAGAGTCCTTGGAACAAGCAACTGGCTATTAAAAAGGTTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092404.13 |
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| CDS-3UTR CCA 90 bp | ATAACCTTTTTAATAGCCAGTTGCTTGTTCCAAGGACTCTTCCATGGACCGATGGGGCAGATCTGGACTTaGAGGTTGATCTGGAGCGCG | + |
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Preference number: 4 (lower is better) Translates to: ITFLIASCLFQGLFHGPMGQIWT*RLIWSA Trigger: CGCGCTCCAGATCAACCTCCAAGTCCAGATCTGCCC...CATCGGTCCATGGAAGAGTCCTTGGAACAAGCAACTGGCTATTAAAAAGGTTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092404.13 |
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| CDS-3UTR CCA 90 bp | TTTAATAGCCAGTTGCTTGTTCCAAGGACTCTTCCATGGACCGATGGACTGAGTATCTTCGGGCAGATCTaGACTTGGAGGTTGATCTGG | + |
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Preference number: 4 (lower is better) Translates to: FNSQLLVPRTLPWTDGLSIFGQI*TWRLIW Trigger: CCAGATCAACCTCCAAGTCCAGATCTGCCCGAAGAT...ACTCAGTCCATCGGTCCATGGAAGAGTCCTTGGAACAAGCAACTGGCTATTAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR CCA 90 bp | CACAGAAACTGGTCCCTGGAGGATCAGCCAAATCAGTTAAAATCTGCAATACTGATCTTCGGGCAGATCTaGACTTGGAGGTTGATCTGG | + |
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Preference number: 4 (lower is better) Translates to: HRNWSLEDQPNQLKSAILIFGQI*TWRLIW Trigger: CCAGATCAACCTCCAAGTCCAGATCTGCCCGAAGAT...CAGTATTGCAGATTTTAACTGATTTGGCTGATCCTCCAGGGACCAGTTTCTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS GCA 90 bp | ACCGACTCCGGCTTCGAGATCGGCTGCGCCGGCGTCGCCGAGGGCTaGGGCTCCGCCGCCCGTAGCCGCCGCCGCCGTACCGACGGGGTG | + |
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Preference number: 5 (lower is better) Translates to: TDSGFEIGCAGVAEG*GSAARSRRRRTDGV Trigger: CACCCCGTCGGTACGGCGGCGGCGGCTACGGGCGGCGGAGCCGCAGCCCTCGGCGACGCCGGCGCAGCCGATCTCGAAGCCGGAGTCGGT 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS GCA 90 bp | GGGAGCGGCTTCGCGACCTGGACCGACTCCGGCTTCGAGATCGGCTaGGCCGGCGTCGCCGAGGGCTGCGGCTCCGCCGCCCGTAGCCGC | + |
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Preference number: 5 (lower is better) Translates to: GSGFATWTDSGFEIG*AGVAEGCGSAARSR Trigger: GCGGCTACGGGCGGCGGAGCCGCAGCCCTCGGCGACGCCGGCGCAGCCGATCTCGAAGCCGGAGTCGGTCCAGGTCGCGAAGCCGCTCCC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS CCA 90 bp | GGGACCGAGACTTGGAGCGGCTGTAGCGGGAGCGGCTTCGCGACCTaGACCGACTCCGGCTTCGAGATCGGCTGCGCCGGCGTCGCCGAG | + |
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Preference number: 5 (lower is better) Translates to: GTETWSGCSGSGFAT*TDSGFEIGCAGVAE Trigger: CTCGGCGACGCCGGCGCAGCCGATCTCGAAGCCGGAGTCGGTCCAGGTCGCGAAGCCGCTCCCGCTACAGCCGCTCCAAGTCTCGGTCCC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS GCA 90 bp | TTCGGGCAGATCTGGACTTGGAGGTTGATCTGGAGCGCGAGCGAGTaGGGGACCGAGACTTGGAGCGGCTGTAGCGGGAGCGGCTTCGCG | + |
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Preference number: 5 (lower is better) Translates to: FGQIWTWRLIWSASE*GTETWSGCSGSGFA Trigger: CGCGAAGCCGCTCCCGCTACAGCCGCTCCAAGTCTCGGTCCCGCACTCGCTCGCGCTCCAGATCAACCTCCAAGTCCAGATCTGCCCGAA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR CAA 90 bp | GACTCTTCCATGGACCGATGGACTGAGTTTGTGGTCCTTTCCCCCAATGTCCTCCGGGCAGATCTGGACTaGGAGGTTGATCTGGAGCGC | + |
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Preference number: 5 (lower is better) Translates to: DSSMDRWTEFVVLSPNVLRADLD*EVDLER Trigger: GCGCTCCAGATCAACCTCCAAGTCCAGATCTGCCCG...GAGGACATTGGGGGAAAGGACCACAAACTCAGTCCATCGGTCCATGGAAGAGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR CAA 90 bp | GGTCCTTTCCCCCAATGTCCTCTGTTAAGCCGCTTGCCGATTCATCTGCTCCAAATCTGGACTTGGAGGTaGATCTGGAGCGCGAGCGAG | + |
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Preference number: 5 (lower is better) Translates to: GPFPQCPLLSRLPIHLLQIWTWR*IWSASE Trigger: CTCGCTCGCGCTCCAGATCAACCTCCAAGTCCAGAT...TTGGAGCAGATGAATCGGCAAGCGGCTTAACAGAGGACATTGGGGGAAAGGACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR CAA 90 bp | TGTCCTCTGTTAAGCCGCTTGCCGATTCATCTGCTCCAATACACGCCCACAGAACGGGCAGATCTGGACTaGGAGGTTGATCTGGAGCGC | + |
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Preference number: 5 (lower is better) Translates to: CPLLSRLPIHLLQYTPTERADLD*EVDLER Trigger: GCGCTCCAGATCAACCTCCAAGTCCAGATCTGCCCG...TTCTGTGGGCGTGTATTGGAGCAGATGAATCGGCAAGCGGCTTAACAGAGGACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR CAA 90 bp | AGGACTCTTCCATGGACCGATGGACTGAGTTTGTGGTCCTTTCCCCCAATGTCCGAGACGGAGGAGGACTaGGACTTGGATCTTCGGGCA | + |
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Preference number: 5 (lower is better) Translates to: RTLPWTDGLSLWSFPPMSETEED*DLDLRA Trigger: TGCCCGAAGATCCAAGTCCAAGTCCTCCTCCGTCTC...GGACATTGGGGGAAAGGACCACAAACTCAGTCCATCGGTCCATGGAAGAGTCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR CAA 90 bp | TGTCCTCTGTTAAGCCGCTTGCCGATTCATCTGCTCCAATACACGCCCACAGAAATCTGGACTTGGAGGTaGATCTGGAGCGCGAGCGAG | + |
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Preference number: 5 (lower is better) Translates to: CPLLSRLPIHLLQYTPTEIWTWR*IWSASE Trigger: CTCGCTCGCGCTCCAGATCAACCTCCAAGTCCAGAT...TTCTGTGGGCGTGTATTGGAGCAGATGAATCGGCAAGCGGCTTAACAGAGGACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR CAA 90 bp | TTTAATAGCCAGTTGCTTGTTCCAAGGACTCTTCCATGGACCGATGGACTGAGTGAGACGGAGGAGGACTaGGACTTGGATCTTCGGGCA | + |
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Preference number: 5 (lower is better) Translates to: FNSQLLVPRTLPWTDGLSETEED*DLDLRA Trigger: TGCCCGAAGATCCAAGTCCAAGTCCTCCTCCGTCTC...ACTCAGTCCATCGGTCCATGGAAGAGTCCTTGGAACAAGCAACTGGCTATTAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS-3UTR CAA 90 bp | ATAACCTTTTTAATAGCCAGTTGCTTGTTCCAAGGACTCTTCCATGGACCGATGATCTGGACTTGGAGGTaGATCTGGAGCGCGAGCGAG | + |
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Preference number: 5 (lower is better) Translates to: ITFLIASCLFQGLFHGPMIWTWR*IWSASE Trigger: CTCGCTCGCGCTCCAGATCAACCTCCAAGTCCAGAT...CATCGGTCCATGGAAGAGTCCTTGGAACAAGCAACTGGCTATTAAAAAGGTTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092404.13 |
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| CDS CCA 72 bp | ACTTGGAGCGGCTGTAGCGGGAGCGGCTTCGCGACCTaGACCGACTCCGGCTTCGAGATCGGCTGCGCCGGC | + |
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Preference number: 6 (lower is better) Translates to: TWSGCSGSGFAT*TDSGFEIGCAG Trigger: GCCGGCGCAGCCGATCTCGAAGCCGGAGTCGGTCCAGGTCGCGAAGCCGCTCCCGCTACAGCCGCTCCAAGT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS CCA 72 bp | TTGATCTGGAGCGCGAGCGAGTGCGGGACCGAGACTTaGAGCGGCTGTAGCGGGAGCGGCTTCGCGACCTGG | + |
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Preference number: 6 (lower is better) Translates to: LIWSASECGTET*SGCSGSGFATW Trigger: CCAGGTCGCGAAGCCGCTCCCGCTACAGCCGCTCCAAGTCTCGGTCCCGCACTCGCTCGCGCTCCAGATCAA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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| CDS CCA 72 bp | GCTTCGACACGGGCGGAGGGCTTCTCGATCGCGACCTaGACCTTGACCTCGAGCGGGATCTGGAGACGGAGG | + |
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Preference number: 6 (lower is better) Translates to: ASTRAEGFSIAT*TLTSSGIWRRR Trigger: CCTCCGTCTCCAGATCCCGCTCGAGGTCAAGGTCCAGGTCGCGATCGAGAAGCCCTCCGCCCGTGTCGAAGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092404.13 ENSMUST00000136914.8 ENSMUST00000190993.7 |
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