Pregenerated sensors for SRSF10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028676Ensembl transcript IDs: ENSMUST00000097844.9, ENSMUST00000102544.9, ENSMUST00000105853.10, ENSMUST00000126641.2
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AACACTTTCTTCAATACAGAATATACTAAGTCCATTGGGATAACAGCTGTCTGCTGTCTACACAGGAGTTaGGAAGAGATGGGCCCTCGT | + |
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Preference number: 2 (lower is better) Translates to: NTFFNTEYTKSIGITAVCCLHRS*EEMGPR Trigger: ACGAGGGCCCATCTCTTCTCAACTCCTGTGTAGACA...GCAGACAGCTGTTATCCCAATGGACTTAGTATATTCTGTATTGAAGAAAGTGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102544.9 ENSMUST00000126641.2 |
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| 3UTR-3UTR TCA 90 bp | AACACTTTCTTCAATACAGAATATACTAAGTCCATTGGGATAACAGCTGTCTGCTGGACCGGCTACCCATaGGTCAATATAAACCTGTTC | + |
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Preference number: 2 (lower is better) Translates to: NTFFNTEYTKSIGITAVCWTGYP*VNINLF Trigger: GAACAGGTTTATATTGACTCATGGGTAGCCGGTCCA...GCAGACAGCTGTTATCCCAATGGACTTAGTATATTCTGTATTGAAGAAAGTGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102544.9 ENSMUST00000126641.2 |
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| 3UTR-3UTR GCA 90 bp | TGTAAAGTTAAATACTTGTTACTTTGGGGATTACCTATTTGCTTGACAGAGCCAGTACAGTATTCATACTaGAGCACCTTCCACCCACCC | + |
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Preference number: 2 (lower is better) Translates to: CKVKYLLLWGLPICLTEPVQYSY*STFHPP Trigger: GGGTGGGTGGAAGGTGCTGCAGTATGAATACTGTAC...TGGCTCTGTCAAGCAAATAGGTAATCCCCAAAGTAACAAGTATTTAACTTTACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102544.9 ENSMUST00000126641.2 |
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| 3UTR-3UTR TCA 90 bp | AACACTTTCTTCAATACAGAATATACTAAGTCCATTGGGATAACAGCTGTCTGCCCATCCAATTTAATTTaGGACAGACCAAGAGAGGCA | + |
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Preference number: 2 (lower is better) Translates to: NTFFNTEYTKSIGITAVCPSNLI*DRPREA Trigger: TGCCTCTCTTGGTCTGTCTCAAATTAAATTGGATGG...GCAGACAGCTGTTATCCCAATGGACTTAGTATATTCTGTATTGAAGAAAGTGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102544.9 ENSMUST00000126641.2 |
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| 3UTR-3UTR GCA 90 bp | ACTGCACAACAGATCAGCTTATCACAGGTTTTCTTCATTATTTGTAGTAATGGGGTAAATAAACTCGGATaGCAACAAAACAAACAGGCA | + |
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Preference number: 2 (lower is better) Translates to: TAQQISLSQVFFIICSNGVNKLG*QQNKQA Trigger: TGCCTGTTTGTTTTGTTGGCATCCGAGTTTATTTAC...CCCATTACTACAAATAATGAAGAAAACCTGTGATAAGCTGATCTGTTGTGCAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000102544.9 ENSMUST00000126641.2 |
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| 3UTR-3UTR CCA 90 bp | CAGCCTTTCATATACATGGAAACCACAATAGACAAGACTAAAAACAAGCTACCCGGAAAAACTTTATATTaGACCATACCTTTACCATCC | + |
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Preference number: 2 (lower is better) Translates to: QPFIYMETTIDKTKNKLPGKTLY*TIPLPS Trigger: GGATGGTAAAGGTATGGTCCAATATAAAGTTTTTCC...GGGTAGCTTGTTTTTAGTCTTGTCTATTGTGGTTTCCATGTATATGAAAGGCTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000126641.2 |
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| 3UTR-3UTR CCA 90 bp | TGTAAAGTTAAATACTTGTTACTTTGGGGATTACCTATTTGCTTGACAGAGCCAACAGGCAGAAAATACTaGCACTGGAATAAACAAAGG | + |
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Preference number: 2 (lower is better) Translates to: CKVKYLLLWGLPICLTEPTGRKY*HWNKQR Trigger: CCTTTGTTTATTCCAGTGCCAGTATTTTCTGCCTGT...TGGCTCTGTCAAGCAAATAGGTAATCCCCAAAGTAACAAGTATTTAACTTTACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102544.9 ENSMUST00000126641.2 |
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| 3UTR CAA 90 bp | AAAGAGAAGAGAGTCTTCTGCAACAATGAATCGAGTATCTTAATCTaGATGAAGCTAACAGTTGAAGACAGTAAGTTGTTTAACCTCTCT | + |
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Preference number: 2 (lower is better) Translates to: KEKRVFCNNESSILI*MKLTVEDSKLFNLS Trigger: AGAGAGGTTAAACAACTTACTGTCTTCAACTGTTAGCTTCATCAAGATTAAGATACTCGATTCATTGTTGCAGAAGACTCTCTTCTCTTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126641.2 |
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| 3UTR-3UTR CAA 90 bp | ACTGCACAACAGATCAGCTTATCACAGGTTTTCTTCATTATTTGTAGTAATGGGCTGTCTACACAGGAGTaGAGAAGAGATGGGCCCTCG | + |
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Preference number: 3 (lower is better) Translates to: TAQQISLSQVFFIICSNGLSTQE*RRDGPS Trigger: CGAGGGCCCATCTCTTCTCAACTCCTGTGTAGACAG...CCCATTACTACAAATAATGAAGAAAACCTGTGATAAGCTGATCTGTTGTGCAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102544.9 ENSMUST00000126641.2 |
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| 3UTR CCA 72 bp | ACTTCATTTTCTCCTCTGGAAGGCCTTAAGCTCAATTaGAAAGGAAATGGAGGCCAAGTAAAGGACAGAACA | + |
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Preference number: 3 (lower is better) Translates to: TSFSPLEGLKLN*KGNGGQVKDRT Trigger: TGTTCTGTCCTTTACTTGGCCTCCATTTCCTTTCCAATTGAGCTTAAGGCCTTCCAGAGGAGAAAATGAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126641.2 |
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| 3UTR CCA 72 bp | TTCCTGGGAGTGATTTTAAGGTTAAGTAGGAATATCTaGAACACACACAACTTGGCACAGCAAGTGCTGAGT | + |
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Preference number: 3 (lower is better) Translates to: FLGVILRLSRNI*NTHNLAQQVLS Trigger: ACTCAGCACTTGCTGTGCCAAGTTGTGTGTGTTCCAGATATTCCTACTTAACCTTAAAATCACTCCCAGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126641.2 |
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| 3UTR CCA 72 bp | AAACCTCATCTGAACTCACAACTTCATTTTCTCCTCTaGAAGGCCTTAAGCTCAATTGGAAAGGAAATGGAG | + |
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Preference number: 3 (lower is better) Translates to: KPHLNSQLHFLL*KALSSIGKEME Trigger: CTCCATTTCCTTTCCAATTGAGCTTAAGGCCTTCCAGAGGAGAAAATGAAGTTGTGAGTTCAGATGAGGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126641.2 |
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| 3UTR-3UTR CAA 90 bp | ACTGCACAACAGATCAGCTTATCACAGGTTTTCTTCATTATTTGTAGTAATGGGCAAGACTTGCCAACATaGGCATTAAGTGGAACTGAC | + |
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Preference number: 3 (lower is better) Translates to: TAQQISLSQVFFIICSNGQDLPT*ALSGTD Trigger: GTCAGTTCCACTTAATGCCAATGTTGGCAAGTCTTG...CCCATTACTACAAATAATGAAGAAAACCTGTGATAAGCTGATCTGTTGTGCAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102544.9 ENSMUST00000126641.2 |
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| 3UTR GCA 72 bp | ACTACACTCAACCCAAGAGCTGCCGATTACTGTTACTaGATTTATAAAGGAACAGGGATATTTTCCAGCATA | + |
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Preference number: 3 (lower is better) Translates to: TTLNPRAADYCY*IYKGTGIFSSI Trigger: TATGCTGGAAAATATCCCTGTTCCTTTATAAATGCAGTAACAGTAATCGGCAGCTCTTGGGTTGAGTGTAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126641.2 |
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| 3UTR-3UTR CAA 90 bp | TGTAAAGTTAAATACTTGTTACTTTGGGGATTACCTATTTGCTTGACAGAGCCACTATGGCTGTCTTCCTaGATGTTCAGACATCCTAGT | + |
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Preference number: 3 (lower is better) Translates to: CKVKYLLLWGLPICLTEPLWLSS*MFRHPS Trigger: ACTAGGATGTCTGAACATCAAGGAAGACAGCCATAG...TGGCTCTGTCAAGCAAATAGGTAATCCCCAAAGTAACAAGTATTTAACTTTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102544.9 ENSMUST00000126641.2 |
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| 3UTR CAA 72 bp | TTAAGGTTAAGTAGGAATATCTGGAACACACACAACTaGGCACAGCAAGTGCTGAGTAATATTGACAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: LRLSRNIWNTHN*AQQVLSNIDSL Trigger: AAGGCTGTCAATATTACTCAGCACTTGCTGTGCCAAGTTGTGTGTGTTCCAGATATTCCTACTTAACCTTAA 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126641.2 |
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| CDS-3UTR TCA 90 bp | CTTAAGGGGGAGGGTTTTCCCTTATGCTTTAATGTTCCATATCTTAGAAACCAGATCGATTTCGGTGTTTaGATCTATCATTGTCGGAAT | + |
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Preference number: 4 (lower is better) Translates to: LKGEGFPLCFNVPYLRNQIDFGV*IYHCRN Trigger: ATTCCGACAATGATAGATTCAAACACCGAAATCGAT...CTGGTTTCTAAGATATGGAACATTAAAGCATAAGGGAAAACCCTCCCCCTTAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000097844.9 ENSMUST00000105853.10 |
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| CDS-3UTR CCA 90 bp | AACACTTTCTTCAATACAGAATATACTAAGTCCATTGGGATAACAGCTGTCTGCATTCCAGCTGCAGTTTaGTCTATCATTGTCGGAATG | + |
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Preference number: 4 (lower is better) Translates to: NTFFNTEYTKSIGITAVCIPAAV*SIIVGM Trigger: CATTCCGACAATGATAGACCAAACTGCAGCTGGAAT...GCAGACAGCTGTTATCCCAATGGACTTAGTATATTCTGTATTGAAGAAAGTGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102544.9 ENSMUST00000126641.2 |
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| CDS-3UTR CCA 90 bp | TGTAAAGTTAAATACTTGTTACTTTGGGGATTACCTATTTGCTTGACAGAGCCAATTCCAGCTGCAGTTTaGTCTATCATTGTCGGAATG | + |
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Preference number: 4 (lower is better) Translates to: CKVKYLLLWGLPICLTEPIPAAV*SIIVGM Trigger: CATTCCGACAATGATAGACCAAACTGCAGCTGGAAT...TGGCTCTGTCAAGCAAATAGGTAATCCCCAAAGTAACAAGTATTTAACTTTACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102544.9 ENSMUST00000126641.2 |
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| 3UTR CAA 72 bp | AGAGTCTTCTGCAACAATGAATCGAGTATCTTAATCTaGATGAAGCTAACAGTTGAAGACAGTAAGTTGTTT | + |
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Preference number: 4 (lower is better) Translates to: RVFCNNESSILI*MKLTVEDSKLF Trigger: AAACAACTTACTGTCTTCAACTGTTAGCTTCATCAAGATTAAGATACTCGATTCATTGTTGCAGAAGACTCT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126641.2 |
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| CDS-3UTR CAA 90 bp | TACTGCAGCACCTTCCACCCACCCTTTGGTCGCTTGAACTGCCCTTCTTTGGTTTATTCCAGCTGCAGTTaGGTCTATCATTGTCGGAAT | + |
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Preference number: 5 (lower is better) Translates to: YCSTFHPPFGRLNCPSLVYSSCS*VYHCRN Trigger: ATTCCGACAATGATAGACCAAACTGCAGCTGGAATA...AACCAAAGAAGGGCAGTTCAAGCGACCAAAGGGTGGGTGGAAGGTGCTGCAGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102544.9 ENSMUST00000126641.2 |
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| CDS-3UTR CAA 90 bp | TGTAAAGTTAAATACTTGTTACTTTGGGGATTACCTATTTGCTTGACAGAGCCATATTCCAGCTGCAGTTaGGTCTATCATTGTCGGAAT | + |
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Preference number: 5 (lower is better) Translates to: CKVKYLLLWGLPICLTEPYSSCS*VYHCRN Trigger: ATTCCGACAATGATAGACCAAACTGCAGCTGGAATA...TGGCTCTGTCAAGCAAATAGGTAATCCCCAAAGTAACAAGTATTTAACTTTACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102544.9 ENSMUST00000126641.2 |
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| CDS GCA 72 bp | AAGTGTAGTAAGCAGAACTGTACTGGGTATTCCAGCTaGAGTTTGGTCTATCATTGTCGGAATGGCTTCGGC | + |
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Preference number: 6 (lower is better) Translates to: KCSKQNCTGYSS*SLVYHCRNGFG Trigger: GCCGAAGCCATTCCGACAATGATAGACCAAACTGCAGCTGGAATACCCAGTACAGTTCTGCTTACTACACTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102544.9 ENSMUST00000126641.2 |
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