Pregenerated sensors for SRSF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018379Ensembl transcript IDs: ENSMUST00000079866.11, ENSMUST00000107920.10, ENSMUST00000134824.9, ENSMUST00000139129.9, ENSMUST00000172186.2
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGCGTGGTGATCCTCTGCTTCTCCTTGGGGAGTAACTGCGACTCCTaGTGTTGCTTCTGCTACGGCTTCTGCTACGACTACGGCTTCGAG | + |
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Preference number: 1 (lower is better) Translates to: SVVILCFSLGSNCDS*CCFCYGFCYDYGFE Trigger: CTCGAAGCCGTAGTCGTAGCAGAAGCCGTAGCAGAAGCAACAGCAGGAGTCGCAGTTACTCCCCAAGGAGAAGCAGAGGATCACCACGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR GCA 90 bp | GTGATCCTCTGCTTCTCCTTGGGGAGTAACTGCGACTCCTGCTGTTaGTTCTGCTACGGCTTCTGCTACGACTACGGCTTCGAGATCGAG | + |
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Preference number: 1 (lower is better) Translates to: VILCFSLGSNCDSCC*FCYGFCYDYGFEIE Trigger: CTCGATCTCGAAGCCGTAGTCGTAGCAGAAGCCGTAGCAGAAGCAACAGCAGGAGTCGCAGTTACTCCCCAAGGAGAAGCAGAGGATCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR GCA 90 bp | GAGAGCGAGATCTGCTATGACGGGGAGAATAGCGTGGTGATCCTCTaGTTCTCCTTGGGGAGTAACTGCGACTCCTGCTGTTGCTTCTGC | + |
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Preference number: 1 (lower is better) Translates to: ESEICYDGENSVVIL*FSLGSNCDSCCCFC Trigger: GCAGAAGCAACAGCAGGAGTCGCAGTTACTCCCCAAGGAGAAGCAGAGGATCACCACGCTATTCTCCCCGTCATAGCAGATCTCGCTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR GCA 90 bp | CTCTGCTTCTCCTTGGGGAGTAACTGCGACTCCTGCTGTTGCTTCTaGTACGGCTTCTGCTACGACTACGGCTTCGAGATCGAGATCTTC | + |
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Preference number: 1 (lower is better) Translates to: LCFSLGSNCDSCCCF*YGFCYDYGFEIEIF Trigger: GAAGATCTCGATCTCGAAGCCGTAGTCGTAGCAGAAGCCGTAGCAGAAGCAACAGCAGGAGTCGCAGTTACTCCCCAAGGAGAAGCAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR TCA 90 bp | TTATGTACGAGAGCGAGATCTGCTATGACGGGGAGAATAGCGTGGTaGTCCTCTGCTTCTCCTTGGGGAGTAACTGCGACTCCTGCTGTT | + |
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Preference number: 1 (lower is better) Translates to: LCTRARSAMTGRIAW*SSASPWGVTATPAV Trigger: AACAGCAGGAGTCGCAGTTACTCCCCAAGGAGAAGCAGAGGATCACCACGCTATTCTCCCCGTCATAGCAGATCTCGCTCTCGTACATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR GCA 90 bp | TTGGGGAGTAACTGCGACTCCTGCTGTTGCTTCTGCTACGGCTTCTaGTACGACTACGGCTTCGAGATCGAGATCTTCCATAACTTGGAC | + |
|
Preference number: 1 (lower is better) Translates to: LGSNCDSCCCFCYGF*YDYGFEIEIFHNLD Trigger: GTCCAAGTTATGGAAGATCTCGATCTCGAAGCCGTAGTCGTAGCAGAAGCCGTAGCAGAAGCAACAGCAGGAGTCGCAGTTACTCCCCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR CCA 90 bp | GCTTCTGCTACGACTACGGCTTCGAGATCGAGATCTTCCATAACTTaGACTTCTGGGCCCATCAACTTTAACCCGGATGTAGGCAGTTTC | + |
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Preference number: 1 (lower is better) Translates to: ASATTTASRSRSSIT*TSGPINFNPDVGSF Trigger: GAAACTGCCTACATCCGGGTTAAAGTTGATGGGCCCAGAAGTCCAAGTTATGGAAGATCTCGATCTCGAAGCCGTAGTCGTAGCAGAAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR CCA 90 bp | GGTGCTTCATGGCTAATCCCAGAATCTGGGAGACTGGATTTACTTTaGAGTTTTGGGCCCAGTCTAGACCAGAGTAGAGTGAGGTTCTCT | + |
|
Preference number: 1 (lower is better) Translates to: GASWLIPESGRLDLL*SFGPSLDQSRVRFS Trigger: AGAGAACCTCACTCTACTCTGGTCTAGACTGGGCCCAAAACTCCAAAGTAAATCCAGTCTCCCAGATTCTGGGATTAGCCATGAAGCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139129.9 |
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| 3UTR GCA 90 bp | TCTACAAAAAGTGTCACCAATCATCTTATGTACGAGAGCGAGATCTaGTATGACGGGGAGAATAGCGTGGTGATCCTCTGCTTCTCCTTG | + |
|
Preference number: 1 (lower is better) Translates to: STKSVTNHLMYESEI*YDGENSVVILCFSL Trigger: CAAGGAGAAGCAGAGGATCACCACGCTATTCTCCCCGTCATAGCAGATCTCGCTCTCGTACATAAGATGATTGGTGACACTTTTTGTAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR TCA 90 bp | GCCTACAGTGAGGCAAAGAACACTTTGCTCATTTCAATCTACAACTaGACTACTATAAACAGGCCATTCTTGGTCCCGTTTCCAAAGCAT | + |
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Preference number: 1 (lower is better) Translates to: AYSEAKNTLLISIYN*TTINRPFLVPFPKH Trigger: ATGCTTTGGAAACGGGACCAAGAATGGCCTGTTTATAGTAGTTCAGTTGTAGATTGAAATGAGCAAAGTGTTCTTTGCCTCACTGTAGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139129.9 |
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| 3UTR CCA 90 bp | GAAATCAAAGTATTTGTAGTTCCAAAGTGGTATCAACTGTCAGTATaGGTACAGCCCTATTTCCTAAGCTTTAAAACCTACGCTGTGCTC | + |
|
Preference number: 1 (lower is better) Translates to: EIKVFVVPKWYQLSV*VQPYFLSFKTYAVL Trigger: GAGCACAGCGTAGGTTTTAAAGCTTAGGAAATAGGGCTGTACCCATACTGACAGTTGATACCACTTTGGAACTACAAATACTTTGATTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139129.9 |
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| 3UTR TCA 90 bp | AGGTATCAGAAAATGTGTCTTACCTTTGTCTCCAGTAGGATGAGCTaGACAGCAAGTTGGGTTATTCAATCAGAAGTTATGAAAGTACTT | + |
|
Preference number: 1 (lower is better) Translates to: RYQKMCLTFVSSRMS*TASWVIQSEVMKVL Trigger: AAGTACTTTCATAACTTCTGATTGAATAACCCAACTTGCTGTTCAGCTCATCCTACTGGAGACAAAGGTAAGACACATTTTCTGATACCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139129.9 |
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| 3UTR CAA 90 bp | ATCTGCTATGACGGGGAGAATAGCGTGGTGATCCTCTGCTTCTCCTaGGGGAGTAACTGCGACTCCTGCTGTTGCTTCTGCTACGGCTTC | + |
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Preference number: 2 (lower is better) Translates to: ICYDGENSVVILCFS*GSNCDSCCCFCYGF Trigger: GAAGCCGTAGCAGAAGCAACAGCAGGAGTCGCAGTTACTCCCCAAGGAGAAGCAGAGGATCACCACGCTATTCTCCCCGTCATAGCAGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR-3UTR TCA 90 bp | TTCATCTGTGACAATAGCACTTGGAGTCATACCATTGCCTCCATTATTGATCTGGGGAGAATAGCGTGGTaGTCCTCTGCTTCTCCTTGG | + |
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Preference number: 2 (lower is better) Translates to: FICDNSTWSHTIASIIDLGRIAW*SSASPW Trigger: CCAAGGAGAAGCAGAGGATCACCACGCTATTCTCCC...CAGATCAATAATGGAGGCAATGGTATGACTCCAAGTGCTATTGTCACAGATGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR-3UTR GCA 90 bp | TATTACACAAGAATGCAATTCAACACTTTAGCCCATTCTGAACAAAACAGCTTGAGTAACTGCGACTCCTaGTGTTGCTTCTGCTACGGC | + |
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Preference number: 2 (lower is better) Translates to: YYTRMQFNTLAHSEQNSLSNCDS*CCFCYG Trigger: GCCGTAGCAGAAGCAACAGCAGGAGTCGCAGTTACT...CAAGCTGTTTTGTTCAGAATGGGCTAAAGTGTTGAATTGCATTCTTGTGTAATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR-3UTR TCA 90 bp | GTTCCATTCTCCAAACCAATTAAGATGAAGATTAAGCTTCAAGGGGTTATCAGTACCATCTACTCGTGCTaGATCCTTCCAAGGAGATTG | + |
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Preference number: 2 (lower is better) Translates to: VPFSKPIKMKIKLQGVISTIYSC*ILPRRL Trigger: CAATCTCCTTGGAAGGATTCAGCACGAGTAGATGGT...ACTGATAACCCCTTGAAGCTTAATCTTCATCTTAATTGGTTTGGAGAATGGAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139129.9 |
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| 3UTR-3UTR GCA 90 bp | TATTACACAAGAATGCAATTCAACACTTTAGCCCATTCTGAACAAAACAGCTTGTACGAGAGCGAGATCTaGTATGACGGGGAGAATAGC | + |
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Preference number: 2 (lower is better) Translates to: YYTRMQFNTLAHSEQNSLYESEI*YDGENS Trigger: GCTATTCTCCCCGTCATAGCAGATCTCGCTCTCGTA...CAAGCTGTTTTGTTCAGAATGGGCTAAAGTGTTGAATTGCATTCTTGTGTAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR GCA 72 bp | TGCTTCTCCTTGGGGAGTAACTGCGACTCCTGCTGTTaGTTCTGCTACGGCTTCTGCTACGACTACGGCTTC | + |
|
Preference number: 3 (lower is better) Translates to: CFSLGSNCDSCC*FCYGFCYDYGF Trigger: GAAGCCGTAGTCGTAGCAGAAGCCGTAGCAGAAGCAACAGCAGGAGTCGCAGTTACTCCCCAAGGAGAAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR TCA 72 bp | AGAGCGAGATCTGCTATGACGGGGAGAATAGCGTGGTaGTCCTCTGCTTCTCCTTGGGGAGTAACTGCGACT | + |
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Preference number: 3 (lower is better) Translates to: RARSAMTGRIAW*SSASPWGVTAT Trigger: AGTCGCAGTTACTCCCCAAGGAGAAGCAGAGGATCACCACGCTATTCTCCCCGTCATAGCAGATCTCGCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR GCA 72 bp | ATCCTCTGCTTCTCCTTGGGGAGTAACTGCGACTCCTaGTGTTGCTTCTGCTACGGCTTCTGCTACGACTAC | + |
|
Preference number: 3 (lower is better) Translates to: ILCFSLGSNCDS*CCFCYGFCYDY Trigger: GTAGTCGTAGCAGAAGCCGTAGCAGAAGCAACAGCAGGAGTCGCAGTTACTCCCCAAGGAGAAGCAGAGGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR GCA 72 bp | ATCTGCTATGACGGGGAGAATAGCGTGGTGATCCTCTaGTTCTCCTTGGGGAGTAACTGCGACTCCTGCTGT | + |
|
Preference number: 3 (lower is better) Translates to: ICYDGENSVVIL*FSLGSNCDSCC Trigger: ACAGCAGGAGTCGCAGTTACTCCCCAAGGAGAAGCAGAGGATCACCACGCTATTCTCCCCGTCATAGCAGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR GCA 72 bp | AGTGTCACCAATCATCTTATGTACGAGAGCGAGATCTaGTATGACGGGGAGAATAGCGTGGTGATCCTCTGC | + |
|
Preference number: 3 (lower is better) Translates to: SVTNHLMYESEI*YDGENSVVILC Trigger: GCAGAGGATCACCACGCTATTCTCCCCGTCATAGCAGATCTCGCTCTCGTACATAAGATGATTGGTGACACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR CCA 72 bp | ACGACTACGGCTTCGAGATCGAGATCTTCCATAACTTaGACTTCTGGGCCCATCAACTTTAACCCGGATGTA | + |
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Preference number: 3 (lower is better) Translates to: TTTASRSRSSIT*TSGPINFNPDV Trigger: TACATCCGGGTTAAAGTTGATGGGCCCAGAAGTCCAAGTTATGGAAGATCTCGATCTCGAAGCCGTAGTCGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR CCA 72 bp | TGGCTAATCCCAGAATCTGGGAGACTGGATTTACTTTaGAGTTTTGGGCCCAGTCTAGACCAGAGTAGAGTG | + |
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Preference number: 3 (lower is better) Translates to: WLIPESGRLDLL*SFGPSLDQSRV Trigger: CACTCTACTCTGGTCTAGACTGGGCCCAAAACTCCAAAGTAAATCCAGTCTCCCAGATTCTGGGATTAGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139129.9 |
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| 3UTR-3UTR CAA 90 bp | ATACTGCCAATTTCATCTGTGACAATAGCACTTGGAGTCATACCATTGCCTCCAGAGATCTTCCATAACTaGGACTTCTGGGCCCATCAA | + |
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Preference number: 3 (lower is better) Translates to: ILPISSVTIALGVIPLPPEIFHN*DFWAHQ Trigger: TTGATGGGCCCAGAAGTCCAAGTTATGGAAGATCTC...TGGAGGCAATGGTATGACTCCAAGTGCTATTGTCACAGATGAAATTGGCAGTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR CCA 72 bp | CGGGGAGTAGAAATCAAAGTATTTGTAGTTCCAAAGTaGTATCAACTGTCAGTATGGGTACAGCCCTATTTC | + |
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Preference number: 3 (lower is better) Translates to: RGVEIKVFVVPK*YQLSVWVQPYF Trigger: GAAATAGGGCTGTACCCATACTGACAGTTGATACCACTTTGGAACTACAAATACTTTGATTTCTACTCCCCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139129.9 |
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| 3UTR-3UTR CAA 90 bp | AGACATGAGGGGAATGTAGATGTTAGGAGCAAGGGGATATTACACAAGAATGCAAGACAGAACTTTCCATaGAAAGATCTAAGCTTTCAC | + |
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Preference number: 3 (lower is better) Translates to: RHEGNVDVRSKGILHKNARQNFP*KDLSFH Trigger: GTGAAAGCTTAGATCTTTCAATGGAAAGTTCTGTCT...TGCATTCTTGTGTAATATCCCCTTGCTCCTAACATCTACATTCCCCTCATGTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR TCA 72 bp | GAGGCAAAGAACACTTTGCTCATTTCAATCTACAACTaGACTACTATAAACAGGCCATTCTTGGTCCCGTTT | + |
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Preference number: 3 (lower is better) Translates to: EAKNTLLISIYN*TTINRPFLVPF Trigger: AAACGGGACCAAGAATGGCCTGTTTATAGTAGTTCAGTTGTAGATTGAAATGAGCAAAGTGTTCTTTGCCTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139129.9 |
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| 3UTR TCA 72 bp | ATCAGAAAATGTGTCTTACCTTTGTCTCCAGTAGGATaGGCTGAACAGCAAGTTGGGTTATTCAATCAGAAG | + |
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Preference number: 3 (lower is better) Translates to: IRKCVLPLSPVG*AEQQVGLFNQK Trigger: CTTCTGATTGAATAACCCAACTTGCTGTTCAGCTCATCCTACTGGAGACAAAGGTAAGACACATTTTCTGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139129.9 |
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| 3UTR TCA 72 bp | AAAATGTGTCTTACCTTTGTCTCCAGTAGGATGAGCTaGACAGCAAGTTGGGTTATTCAATCAGAAGTTATG | + |
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Preference number: 3 (lower is better) Translates to: KMCLTFVSSRMS*TASWVIQSEVM Trigger: CATAACTTCTGATTGAATAACCCAACTTGCTGTTCAGCTCATCCTACTGGAGACAAAGGTAAGACACATTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139129.9 |
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| 3UTR CCA 72 bp | GTATTTGTAGTTCCAAAGTGGTATCAACTGTCAGTATaGGTACAGCCCTATTTCCTAAGCTTTAAAACCTAC | + |
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Preference number: 3 (lower is better) Translates to: VFVVPKWYQLSV*VQPYFLSFKTY Trigger: GTAGGTTTTAAAGCTTAGGAAATAGGGCTGTACCCATACTGACAGTTGATACCACTTTGGAACTACAAATAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139129.9 |
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| 3UTR CAA 72 bp | GACGGGGAGAATAGCGTGGTGATCCTCTGCTTCTCCTaGGGGAGTAACTGCGACTCCTGCTGTTGCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: DGENSVVILCFS*GSNCDSCCCFC Trigger: GCAGAAGCAACAGCAGGAGTCGCAGTTACTCCCCAAGGAGAAGCAGAGGATCACCACGCTATTCTCCCCGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| CDS-3UTR CCA 90 bp | TGGAGTCATACCATTGCCTCCATTATTGATCTGATCCTCCTCAATCCTCCTTTTTGTTCTCGGACCGCCTaGACGGCGGGCCATAGCGGC | + |
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Preference number: 4 (lower is better) Translates to: WSHTIASIIDLILLNPPFCSRTA*TAGHSG Trigger: GCCGCTATGGCCCGCCGTCCAGGCGGTCCGAGAACA...AAAAGGAGGATTGAGGAGGATCAGATCAATAATGGAGGCAATGGTATGACTCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000079866.11 ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR CCA 90 bp | ATCCTCCTCAATCCTCCTTTTGACAATCCTAAAATGATTGAAATGTGCTCCACATGTTCTCGGACCGCCTaGACGGCGGGCCATAGCGGC | + |
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Preference number: 4 (lower is better) Translates to: ILLNPPFDNPKMIEMCSTCSRTA*TAGHSG Trigger: GCCGCTATGGCCCGCCGTCCAGGCGGTCCGAGAACA...TGTGGAGCACATTTCAATCATTTTAGGATTGTCAAAAGGAGGATTGAGGAGGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000079866.11 ENSMUST00000107920.10 ENSMUST00000134824.9 ENSMUST00000139129.9 ENSMUST00000172186.2 |
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| CDS-3UTR GCA 90 bp | CCCTCGCCTTCTAGTATAAGGTCAATACTGCCAATTTCATCTGTGACAATAGCAGGTTACCCACGTAGATaGGGCAGTCGTTGTTCCCCG | + |
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Preference number: 4 (lower is better) Translates to: PSPSSIRSILPISSVTIAGYPRR*GSRCSP Trigger: CGGGGAACAACGACTGCCGCATCTACGTGGGTAACC...TGCTATTGTCACAGATGAAATTGGCAGTATTGACCTTATACTAGAAGGCGAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079866.11 ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR TCA 90 bp | AGTCATACCATTGCCTCCATTATTGATCTGATCCTCCTCAATCCTCCTTTTGACGGGAGAATAGCGTGGTaGTCCTCTGCTTCTCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: SHTIASIIDLILLNPPFDGRIAW*SSASPW Trigger: CCAAGGAGAAGCAGAGGATCACCACGCTATTCTCCC...GTCAAAAGGAGGATTGAGGAGGATCAGATCAATAATGGAGGCAATGGTATGACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR GCA 90 bp | CCCTCGCCTTCTAGTATAAGGTCAATACTGCCAATTTCATCTGTGACAATAGCATGCGACTCCTGCTGTTaGTTCTGCTACGGCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: PSPSSIRSILPISSVTIACDSCC*FCYGFC Trigger: GCAGAAGCCGTAGCAGAAGCAACAGCAGGAGTCGCA...TGCTATTGTCACAGATGAAATTGGCAGTATTGACCTTATACTAGAAGGCGAGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR TCA 90 bp | GCCAATTTCATCTGTGACAATAGCACTTGGAGTCATACCATTGCCTCCATTATTGGGAGAATAGCGTGGTaGTCCTCTGCTTCTCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: ANFICDNSTWSHTIASIIGRIAW*SSASPW Trigger: CCAAGGAGAAGCAGAGGATCACCACGCTATTCTCCC...AATAATGGAGGCAATGGTATGACTCCAAGTGCTATTGTCACAGATGAAATTGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR GCA 90 bp | CTCCTCAATCCTCCTTTTGACAATCCTAAAATGATTGAAATGTGCTCCACAATCGGTTACCCACGTAGATaGGGCAGTCGTTGTTCCCCG | + |
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Preference number: 4 (lower is better) Translates to: LLNPPFDNPKMIEMCSTIGYPRR*GSRCSP Trigger: CGGGGAACAACGACTGCCGCATCTACGTGGGTAACC...GATTGTGGAGCACATTTCAATCATTTTAGGATTGTCAAAAGGAGGATTGAGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000079866.11 ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR GCA 90 bp | TTCATCTGTGACAATAGCACTTGGAGTCATACCATTGCCTCCATTATTGATCTGTGCGACTCCTGCTGTTaGTTCTGCTACGGCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: FICDNSTWSHTIASIIDLCDSCC*FCYGFC Trigger: GCAGAAGCCGTAGCAGAAGCAACAGCAGGAGTCGCA...CAGATCAATAATGGAGGCAATGGTATGACTCCAAGTGCTATTGTCACAGATGAA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR GCA 90 bp | TGGAGTCATACCATTGCCTCCATTATTGATCTGATCCTCCTCAATCCTCCTTTTAGTAACTGCGACTCCTaGTGTTGCTTCTGCTACGGC | + |
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Preference number: 4 (lower is better) Translates to: WSHTIASIIDLILLNPPFSNCDS*CCFCYG Trigger: GCCGTAGCAGAAGCAACAGCAGGAGTCGCAGTTACT...AAAAGGAGGATTGAGGAGGATCAGATCAATAATGGAGGCAATGGTATGACTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR GCA 90 bp | TCAATACTGCCAATTTCATCTGTGACAATAGCACTTGGAGTCATACCATTGCCTTCCTGCTGTTGCTTCTaGTACGGCTTCTGCTACGAC | + |
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Preference number: 4 (lower is better) Translates to: SILPISSVTIALGVIPLPSCCCF*YGFCYD Trigger: GTCGTAGCAGAAGCCGTAGCAGAAGCAACAGCAGGA...AGGCAATGGTATGACTCCAAGTGCTATTGTCACAGATGAAATTGGCAGTATTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR GCA 90 bp | TTCATCTGTGACAATAGCACTTGGAGTCATACCATTGCCTCCATTATTGATCTGTCCTGCTGTTGCTTCTaGTACGGCTTCTGCTACGAC | + |
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Preference number: 4 (lower is better) Translates to: FICDNSTWSHTIASIIDLSCCCF*YGFCYD Trigger: GTCGTAGCAGAAGCCGTAGCAGAAGCAACAGCAGGA...CAGATCAATAATGGAGGCAATGGTATGACTCCAAGTGCTATTGTCACAGATGAA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR GCA 90 bp | GCCAATTTCATCTGTGACAATAGCACTTGGAGTCATACCATTGCCTCCATTATTAGTAACTGCGACTCCTaGTGTTGCTTCTGCTACGGC | + |
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Preference number: 4 (lower is better) Translates to: ANFICDNSTWSHTIASIISNCDS*CCFCYG Trigger: GCCGTAGCAGAAGCAACAGCAGGAGTCGCAGTTACT...AATAATGGAGGCAATGGTATGACTCCAAGTGCTATTGTCACAGATGAAATTGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR GCA 90 bp | GCCAATTTCATCTGTGACAATAGCACTTGGAGTCATACCATTGCCTCCATTATTAGCGTGGTGATCCTCTaGTTCTCCTTGGGGAGTAAC | + |
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Preference number: 4 (lower is better) Translates to: ANFICDNSTWSHTIASIISVVIL*FSLGSN Trigger: GTTACTCCCCAAGGAGAAGCAGAGGATCACCACGCT...AATAATGGAGGCAATGGTATGACTCCAAGTGCTATTGTCACAGATGAAATTGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR GCA 90 bp | AGTCATACCATTGCCTCCATTATTGATCTGATCCTCCTCAATCCTCCTTTTGACTGTGAGAGCGAGATCTaGTATGACGGGGAGAATAGC | + |
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Preference number: 4 (lower is better) Translates to: SHTIASIIDLILLNPPFDCESEI*YDGENS Trigger: GCTATTCTCCCCGTCATAGCAGATCTCGCTCTCACA...GTCAAAAGGAGGATTGAGGAGGATCAGATCAATAATGGAGGCAATGGTATGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107920.10 |
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| CDS-3UTR CCA 90 bp | TGGAGTCATACCATTGCCTCCATTATTGATCTGATCCTCCTCAATCCTCCTTTTGGTCGATGTCGCGGATaGCGCCGTATTTGTAAAACA | + |
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Preference number: 4 (lower is better) Translates to: WSHTIASIIDLILLNPPFGRCRG*RRICKT Trigger: TGTTTTACAAATACGGCGCCATCCGCGACATCGACC...AAAAGGAGGATTGAGGAGGATCAGATCAATAATGGAGGCAATGGTATGACTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000079866.11 ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR GCA 90 bp | CTGTTTCTTTCACTAGCAAAAATTTCTGGTCTCCCCTATATTCTACATTACATCGGTTACCCACGTAGATaGGGCAGTCGTTGTTCCCCG | + |
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Preference number: 4 (lower is better) Translates to: LFLSLAKISGLPYILHYIGYPRR*GSRCSP Trigger: CGGGGAACAACGACTGCCGCATCTACGTGGGTAACC...GATGTAATGTAGAATATAGGGGAGACCAGAAATTTTTGCTAGTGAAAGAAACAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000139129.9 |
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| CDS-3UTR GCA 90 bp | GCCAATTTCATCTGTGACAATAGCACTTGGAGTCATACCATTGCCTCCATTATTACTCCACGACACCAGTaGCATCTCGGTAAACATCAG | + |
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Preference number: 4 (lower is better) Translates to: ANFICDNSTWSHTIASIITPRHQ*HLGKHQ Trigger: CTGATGTTTACCGAGATGGCACTGGTGTCGTGGAGT...AATAATGGAGGCAATGGTATGACTCCAAGTGCTATTGTCACAGATGAAATTGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000079866.11 ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR GCA 90 bp | ATCCTCCTCAATCCTCCTTTTGACAATCCTAAAATGATTGAAATGTGCTCCACAAGCGTGGTGATCCTCTaGTTCTCCTTGGGGAGTAAC | + |
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Preference number: 4 (lower is better) Translates to: ILLNPPFDNPKMIEMCSTSVVIL*FSLGSN Trigger: GTTACTCCCCAAGGAGAAGCAGAGGATCACCACGCT...TGTGGAGCACATTTCAATCATTTTAGGATTGTCAAAAGGAGGATTGAGGAGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR GCA 90 bp | ACAAGTTACCAAAGACATGAGGGGAATGTAGATGTTAGGAGCAAGGGGATATTATACGAGAGCGAGATCTaGTATGACGGGGAGAATAGC | + |
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Preference number: 4 (lower is better) Translates to: TSYQRHEGNVDVRSKGILYESEI*YDGENS Trigger: GCTATTCTCCCCGTCATAGCAGATCTCGCTCTCGTA...TAATATCCCCTTGCTCCTAACATCTACATTCCCCTCATGTCTTTGGTAACTTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000139129.9 |
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| CDS-3UTR CCA 90 bp | ATCTGTGACAATAGCACTTGGAGTCATACCATTGCCTCCATTATTGATCTGATCGGTCGATGTCGCGGATaGCGCCGTATTTGTAAAACA | + |
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Preference number: 4 (lower is better) Translates to: ICDNSTWSHTIASIIDLIGRCRG*RRICKT Trigger: TGTTTTACAAATACGGCGCCATCCGCGACATCGACC...GATCAGATCAATAATGGAGGCAATGGTATGACTCCAAGTGCTATTGTCACAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079866.11 ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR CCA 90 bp | CTGATCCTCCTCAATCCTCCTTTTGACAATCCTAAAATGATTGAAATGTGCTCCGGTCGATGTCGCGGATaGCGCCGTATTTGTAAAACA | + |
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Preference number: 4 (lower is better) Translates to: LILLNPPFDNPKMIEMCSGRCRG*RRICKT Trigger: TGTTTTACAAATACGGCGCCATCCGCGACATCGACC...GGAGCACATTTCAATCATTTTAGGATTGTCAAAAGGAGGATTGAGGAGGATCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000079866.11 ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR CCA 90 bp | CTCCTCAATCCTCCTTTTGACAATCCTAAAATGATTGAAATGTGCTCCACAATCTCCTCTGCTTCTCCTTaGGGAGTAACTGCGACTCCT | + |
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Preference number: 4 (lower is better) Translates to: LLNPPFDNPKMIEMCSTISSASP*GVTATP Trigger: AGGAGTCGCAGTTACTCCCCAAGGAGAAGCAGAGGA...GATTGTGGAGCACATTTCAATCATTTTAGGATTGTCAAAAGGAGGATTGAGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR GCA 90 bp | CTCCTCAATCCTCCTTTTGACAATCCTAAAATGATTGAAATGTGCTCCACAATCACTCCACGACACCAGTaGCATCTCGGTAAACATCAG | + |
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Preference number: 4 (lower is better) Translates to: LLNPPFDNPKMIEMCSTITPRHQ*HLGKHQ Trigger: CTGATGTTTACCGAGATGGCACTGGTGTCGTGGAGT...GATTGTGGAGCACATTTCAATCATTTTAGGATTGTCAAAAGGAGGATTGAGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000079866.11 ENSMUST00000107920.10 ENSMUST00000134824.9 ENSMUST00000139129.9 |
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| CDS-3UTR TCA 90 bp | AGTCATACCATTGCCTCCATTATTGATCTGATCCTCCTCAATCCTCCTTTTGACGCAGTTTCTCCCTCGTaGGATCTAAACTTAGTGTTA | + |
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Preference number: 4 (lower is better) Translates to: SHTIASIIDLILLNPPFDAVSPS*DLNLVL Trigger: TAACACTAAGTTTAGATCTCACGAGGGAGAAACTGC...GTCAAAAGGAGGATTGAGGAGGATCAGATCAATAATGGAGGCAATGGTATGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR CCA 90 bp | CTGTTTCTTTCACTAGCAAAAATTTCTGGTCTCCCCTATATTCTACATTACATCTCCTCTGCTTCTCCTTaGGGAGTAACTGCGACTCCT | + |
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Preference number: 4 (lower is better) Translates to: LFLSLAKISGLPYILHYISSASP*GVTATP Trigger: AGGAGTCGCAGTTACTCCCCAAGGAGAAGCAGAGGA...GATGTAATGTAGAATATAGGGGAGACCAGAAATTTTTGCTAGTGAAAGAAACAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139129.9 |
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| CDS-3UTR CCA 90 bp | TCGCCTTCTAGTATAAGGTCAATACTGCCAATTTCATCTGTGACAATAGCACTTAGATCTTCCATAACTTaGACTTCTGGGCCCATCAAC | + |
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Preference number: 4 (lower is better) Translates to: SPSSIRSILPISSVTIALRSSIT*TSGPIN Trigger: GTTGATGGGCCCAGAAGTCCAAGTTATGGAAGATCT...AAGTGCTATTGTCACAGATGAAATTGGCAGTATTGACCTTATACTAGAAGGCGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR TCA 90 bp | ATCCTCCTCAATCCTCCTTTTGACAATCCTAAAATGATTGAAATGTGCTCCACAGCAGTTTCTCCCTCGTaGGATCTAAACTTAGTGTTA | + |
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Preference number: 4 (lower is better) Translates to: ILLNPPFDNPKMIEMCSTAVSPS*DLNLVL Trigger: TAACACTAAGTTTAGATCTCACGAGGGAGAAACTGC...TGTGGAGCACATTTCAATCATTTTAGGATTGTCAAAAGGAGGATTGAGGAGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| 3UTR CAA 72 bp | ATCAACTTTAACCCGGATGTAGGCAGTTTCTCCCTATaGGATAGACAGAACTTTCCATTGAAAGATCTAAGC | + |
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Preference number: 4 (lower is better) Translates to: INFNPDVGSFSL*DRQNFPLKDLS Trigger: GCTTAGATCTTTCAATGGAAAGTTCTGTCTATCCAATAGGGAGAAACTGCCTACATCCGGGTTAAAGTTGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079866.11 |
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| 3UTR CAA 72 bp | CACCACCCCTACAAAAGCATGGCTCATAGACAGATCTaGGAATTTATCATATTCAACTCCAGAATTGAGATG | + |
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Preference number: 4 (lower is better) Translates to: HHPYKSMAHRQI*EFIIFNSRIEM Trigger: CATCTCAATTCTGGAGTTGAATATGATAAATTCCAAGATCTGTCTATGAGCCATGCTTTTGTAGGGGTGGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139129.9 |
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| CDS-3UTR CCA 90 bp | TATTACACAAGAATGCAATTCAACACTTTAGCCCATTCTGAACAAAACAGCTTGAGATCTTCCATAACTTaGACTTCTGGGCCCATCAAC | + |
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Preference number: 4 (lower is better) Translates to: YYTRMQFNTLAHSEQNSLRSSIT*TSGPIN Trigger: GTTGATGGGCCCAGAAGTCCAAGTTATGGAAGATCT...CAAGCTGTTTTGTTCAGAATGGGCTAAAGTGTTGAATTGCATTCTTGTGTAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139129.9 |
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| CDS-3UTR GCA 90 bp | AGGTCAATACTGCCAATTTCATCTGTGACAATAGCACTTGGAGTCATACCATTGATCCAGTTTTCGAACTaGATACGTCATATCTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: RSILPISSVTIALGVIPLIQFSN*IRHIFF Trigger: AAAGAAGATATGACGTATGCAGTTCGAAAACTGGAT...CAATGGTATGACTCCAAGTGCTATTGTCACAGATGAAATTGGCAGTATTGACCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079866.11 ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR GCA 90 bp | TTCATCTGTGACAATAGCACTTGGAGTCATACCATTGCCTCCATTATTGATCTGATCCAGTTTTCGAACTaGATACGTCATATCTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: FICDNSTWSHTIASIIDLIQFSN*IRHIFF Trigger: AAAGAAGATATGACGTATGCAGTTCGAAAACTGGAT...CAGATCAATAATGGAGGCAATGGTATGACTCCAAGTGCTATTGTCACAGATGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079866.11 ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR GCA 90 bp | TCGCCTTCTAGTATAAGGTCAATACTGCCAATTTCATCTGTGACAATAGCACTTATCCAGTTTTCGAACTaGATACGTCATATCTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: SPSSIRSILPISSVTIALIQFSN*IRHIFF Trigger: AAAGAAGATATGACGTATGCAGTTCGAAAACTGGAT...AAGTGCTATTGTCACAGATGAAATTGGCAGTATTGACCTTATACTAGAAGGCGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079866.11 ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR GCA 90 bp | CTCCTCAATCCTCCTTTTGACAATCCTAAAATGATTGAAATGTGCTCCACAATCATCCAGTTTTCGAACTaGATACGTCATATCTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: LLNPPFDNPKMIEMCSTIIQFSN*IRHIFF Trigger: AAAGAAGATATGACGTATGCAGTTCGAAAACTGGAT...GATTGTGGAGCACATTTCAATCATTTTAGGATTGTCAAAAGGAGGATTGAGGAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000079866.11 ENSMUST00000107920.10 ENSMUST00000134824.9 ENSMUST00000139129.9 |
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| 3UTR CAA 72 bp | TTAACTATGCTAATTCCTCATCCTTTTAGTTGTACTTaGAGTTCTGTAACACAGCTACCTAACCTTAATGCA | + |
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Preference number: 4 (lower is better) Translates to: LTMLIPHPFSCT*SSVTQLPNLNA Trigger: TGCATTAAGGTTAGGTAGCTGTGTTACAGAACTCAAAGTACAACTAAAAGGATGAGGAATTAGCATAGTTAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139129.9 |
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| CDS TCA 90 bp | AGATATGTGAGAGCGAGATCTGCTATGACGGGGAGAATAGCGTGGTaGTCCTCTGCTTCTCCTTGGGGAGTAACTGCGACTCCTGCTGTT | + |
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Preference number: 5 (lower is better) Translates to: RYVRARSAMTGRIAW*SSASPWGVTATPAV Trigger: AACAGCAGGAGTCGCAGTTACTCCCCAAGGAGAAGCAGAGGATCACCACGCTATTCTCCCCGTCATAGCAGATCTCGCTCTCACATATCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107920.10 |
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| CDS-3UTR CAA 90 bp | CTGATCCTCCTCAATCCTCCTTTTGACAATCCTAAAATGATTGAAATGTGCTCCCTGCGACTCCTGCTGTaGCTTCTGCTACGGCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: LILLNPPFDNPKMIEMCSLRLLL*LLLRLL Trigger: CAGAAGCCGTAGCAGAAGCAACAGCAGGAGTCGCAG...GGAGCACATTTCAATCATTTTAGGATTGTCAAAAGGAGGATTGAGGAGGATCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR CAA 90 bp | GCCAATTTCATCTGTGACAATAGCACTTGGAGTCATACCATTGCCTCCATTATTCTGCGACTCCTGCTGTaGCTTCTGCTACGGCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: ANFICDNSTWSHTIASIILRLLL*LLLRLL Trigger: CAGAAGCCGTAGCAGAAGCAACAGCAGGAGTCGCAG...AATAATGGAGGCAATGGTATGACTCCAAGTGCTATTGTCACAGATGAAATTGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR CAA 90 bp | ATCCTCCTCAATCCTCCTTTTGACAATCCTAAAATGATTGAAATGTGCTCCACAATCCTCTGCTTCTCCTaGGGGAGTAACTGCGACTCC | + |
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Preference number: 5 (lower is better) Translates to: ILLNPPFDNPKMIEMCSTILCFS*GSNCDS Trigger: GGAGTCGCAGTTACTCCCCAAGGAGAAGCAGAGGAT...TGTGGAGCACATTTCAATCATTTTAGGATTGTCAAAAGGAGGATTGAGGAGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR CAA 90 bp | AGTCATACCATTGCCTCCATTATTGATCTGATCCTCCTCAATCCTCCTTTTGACGAGATCTTCCATAACTaGGACTTCTGGGCCCATCAA | + |
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Preference number: 5 (lower is better) Translates to: SHTIASIIDLILLNPPFDEIFHN*DFWAHQ Trigger: TTGATGGGCCCAGAAGTCCAAGTTATGGAAGATCTC...GTCAAAAGGAGGATTGAGGAGGATCAGATCAATAATGGAGGCAATGGTATGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS-3UTR CAA 90 bp | ATTGATCTGATCCTCCTCAATCCTCCTTTTGACAATCCTAAAATGATTGAAATGGAGATCTTCCATAACTaGGACTTCTGGGCCCATCAA | + |
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Preference number: 5 (lower is better) Translates to: IDLILLNPPFDNPKMIEMEIFHN*DFWAHQ Trigger: TTGATGGGCCCAGAAGTCCAAGTTATGGAAGATCTC...CATTTCAATCATTTTAGGATTGTCAAAAGGAGGATTGAGGAGGATCAGATCAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS GCA 72 bp | TGGTTCGGATATCCGGAGGTAGGTTACCCACGTAGATaGGGCAGTCGTTGTTCCCCGCCGGGCCACGGATCA | + |
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Preference number: 6 (lower is better) Translates to: WFGYPEVGYPRR*GSRCSPPGHGS Trigger: TGATCCGTGGCCCGGCGGGGAACAACGACTGCCGCATCTACGTGGGTAACCTACCTCCGGATATCCGAACCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079866.11 ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS CCA 72 bp | GTCCCCCGCGGCGGTTCTTCAGGTCGATGTCGCGGATaGCGCCGTATTTGTAAAACACGTCCTCGATGTCCT | + |
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Preference number: 6 (lower is better) Translates to: VPRGGSSGRCRG*RRICKTRPRCP Trigger: AGGACATCGAGGACGTGTTTTACAAATACGGCGCCATCCGCGACATCGACCTGAAGAACCGCCGCGGGGGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000079866.11 ENSMUST00000107920.10 ENSMUST00000139129.9 |
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| CDS CCA 72 bp | TGGCGCCGTATTTGTAAAACACGTCCTCGATGTCCTTaGTTCGGATATCCGGAGGTAGGTTACCCACGTAGA | + |
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Preference number: 6 (lower is better) Translates to: WRRICKTRPRCP*FGYPEVGYPRR Trigger: TCTACGTGGGTAACCTACCTCCGGATATCCGAACCAAGGACATCGAGGACGTGTTTTACAAATACGGCGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079866.11 ENSMUST00000107920.10 ENSMUST00000139129.9 |
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