Pregenerated sensors for SRRD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029346Ensembl transcript IDs: ENSMUST00000031289.7, ENSMUST00000146510.8
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGTCCCCAGTCGGCCTGTATTCCTGGCCGGGCAAAGGATCTGGTGTaGTGTGCACCGTGGCTCCTGGCCCAGGTGGAGAGAACTGTCCTG | + |
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Preference number: 1 (lower is better) Translates to: CPQSACIPGRAKDLV*CAPWLLAQVERTVL Trigger: CAGGACAGTTCTCTCCACCTGGGCCAGGAGCCACGGTGCACACCACACCAGATCCTTTGCCCGGCCAGGAATACAGGCCGACTGGGGACA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| 3UTR GCA 90 bp | CCAGTCGGCCTGTATTCCTGGCCGGGCAAAGGATCTGGTGTGGTGTaGACCGTGGCTCCTGGCCCAGGTGGAGAGAACTGTCCTGTTACT | + |
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Preference number: 1 (lower is better) Translates to: PVGLYSWPGKGSGVV*TVAPGPGGENCPVT Trigger: AGTAACAGGACAGTTCTCTCCACCTGGGCCAGGAGCCACGGTGCACACCACACCAGATCCTTTGCCCGGCCAGGAATACAGGCCGACTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| 3UTR CCA 90 bp | GCCTGTATTCCTGGCCGGGCAAAGGATCTGGTGTGGTGTGCACCGTaGCTCCTGGCCCAGGTGGAGAGAACTGTCCTGTTACTCCAGCTG | + |
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Preference number: 1 (lower is better) Translates to: ACIPGRAKDLVWCAP*LLAQVERTVLLLQL Trigger: CAGCTGGAGTAACAGGACAGTTCTCTCCACCTGGGCCAGGAGCCACGGTGCACACCACACCAGATCCTTTGCCCGGCCAGGAATACAGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| 3UTR CCA 90 bp | CACAGGTCCCCAGGCAGTCCTTCCAGCTTCAATAGTGGGAACCAGTaGACAGATGTATCATTAAAGGTGTCAGTGTACTGGGGAGTCTGC | + |
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Preference number: 1 (lower is better) Translates to: HRSPGSPSSFNSGNQ*TDVSLKVSVYWGVC Trigger: GCAGACTCCCCAGTACACTGACACCTTTAATGATACATCTGTCCACTGGTTCCCACTATTGAAGCTGGAAGGACTGCCTGGGGACCTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| 3UTR-3UTR GCA 90 bp | CCCAGTCGGCCTGTATTCCTGGCCGGGCAAAGGATCTGGTGTGGTGTGCACCGTAGGCTCTTCCTGGGATaGCCACAGGTCCCCAGGCAG | + |
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Preference number: 2 (lower is better) Translates to: PSRPVFLAGQRIWCGVHRRLFLG*PQVPRQ Trigger: CTGCCTGGGGACCTGTGGGCATCCCAGGAAGAGCCT...ACGGTGCACACCACACCAGATCCTTTGCCCGGCCAGGAATACAGGCCGACTGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| 3UTR-3UTR TCA 90 bp | ATTCCTGGCCGGGCAAAGGATCTGGTGTGGTGTGCACCGTGGCTCCTGGCCCAGTCCTGTTACTCCAGCTaGGCGATCTGTAGCTTTCCT | + |
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Preference number: 2 (lower is better) Translates to: IPGRAKDLVWCAPWLLAQSCYSS*AICSFP Trigger: AGGAAAGCTACAGATCGCTCAGCTGGAGTAACAGGA...CTGGGCCAGGAGCCACGGTGCACACCACACCAGATCCTTTGCCCGGCCAGGAAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| 3UTR-3UTR GCA 90 bp | CCCCAGGCAGTCCTTCCAGCTTCAATAGTGGGAACCAGTGGACAGATGTATCATGTGTACTGGGGAGTCTaGGGCAGTGGGACCTCCTCC | + |
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Preference number: 2 (lower is better) Translates to: PQAVLPASIVGTSGQMYHVYWGV*GSGTSS Trigger: GGAGGAGGTCCCACTGCCGCAGACTCCCCAGTACAC...ATGATACATCTGTCCACTGGTTCCCACTATTGAAGCTGGAAGGACTGCCTGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| 3UTR-3UTR CCA 90 bp | GGTAGTCAGGCTCTTCCTGGGATGCCCACAGGTCCCCAGGCAGTCCTTCCAGCTAATAGTGGGAACCAGTaGACAGATGTATCATTAAAG | + |
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Preference number: 2 (lower is better) Translates to: GSQALPGMPTGPQAVLPANSGNQ*TDVSLK Trigger: CTTTAATGATACATCTGTCCACTGGTTCCCACTATT...AGCTGGAAGGACTGCCTGGGGACCTGTGGGCATCCCAGGAAGAGCCTGACTACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| 3UTR CCA 72 bp | CCCAGTCGGCCTGTATTCCTGGCCGGGCAAAGGATCTaGTGTGGTGTGCACCGTGGCTCCTGGCCCAGGTGG | + |
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Preference number: 3 (lower is better) Translates to: PSRPVFLAGQRI*CGVHRGSWPRW Trigger: CCACCTGGGCCAGGAGCCACGGTGCACACCACACCAGATCCTTTGCCCGGCCAGGAATACAGGCCGACTGGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| 3UTR CCA 72 bp | TCGGCCTGTATTCCTGGCCGGGCAAAGGATCTGGTGTaGTGTGCACCGTGGCTCCTGGCCCAGGTGGAGAGA | + |
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Preference number: 3 (lower is better) Translates to: SACIPGRAKDLV*CAPWLLAQVER Trigger: TCTCTCCACCTGGGCCAGGAGCCACGGTGCACACCACACCAGATCCTTTGCCCGGCCAGGAATACAGGCCGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| 3UTR CCA 72 bp | GGGCAAAGGATCTGGTGTGGTGTGCACCGTGGCTCCTaGCCCAGGTGGAGAGAACTGTCCTGTTACTCCAGC | + |
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Preference number: 3 (lower is better) Translates to: GQRIWCGVHRGS*PRWRELSCYSS Trigger: GCTGGAGTAACAGGACAGTTCTCTCCACCTGGGCCAGGAGCCACGGTGCACACCACACCAGATCCTTTGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| 3UTR CCA 72 bp | GGATGTGACTCAGTGTCCCCAGTCGGCCTGTATTCCTaGCCGGGCAAAGGATCTGGTGTGGTGTGCACCGTG | + |
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Preference number: 3 (lower is better) Translates to: GCDSVSPVGLYS*PGKGSGVVCTV Trigger: CACGGTGCACACCACACCAGATCCTTTGCCCGGCCAGGAATACAGGCCGACTGGGGACACTGAGTCACATCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| 3UTR TCA 72 bp | TCTCTATTTGGGAGACCAGGCCACCAGGGCAGGATGTaGCTCAGTGTCCCCAGTCGGCCTGTATTCCTGGCC | + |
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Preference number: 3 (lower is better) Translates to: SLFGRPGHQGRM*LSVPSRPVFLA Trigger: GGCCAGGAATACAGGCCGACTGGGGACACTGAGTCACATCCTGCCCTGGTGGCCTGGTCTCCCAAATAGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| 3UTR GCA 72 bp | GTCCTCACAGTCCTGGTAGTCAGGCTCTTCCTGGGATaGCCACAGGTCCCCAGGCAGTCCTTCCAGCTTCAA | + |
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Preference number: 3 (lower is better) Translates to: VLTVLVVRLFLG*PQVPRQSFQLQ Trigger: TTGAAGCTGGAAGGACTGCCTGGGGACCTGTGGGCATCCCAGGAAGAGCCTGACTACCAGGACTGTGAGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| 3UTR CCA 72 bp | CCAGGCAGTCCTTCCAGCTTCAATAGTGGGAACCAGTaGACAGATGTATCATTAAAGGTGTCAGTGTACTGG | + |
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Preference number: 3 (lower is better) Translates to: PGSPSSFNSGNQ*TDVSLKVSVYW Trigger: CCAGTACACTGACACCTTTAATGATACATCTGTCCACTGGTTCCCACTATTGAAGCTGGAAGGACTGCCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| CDS-3UTR CCA 90 bp | ATTCCTGGCCGGGCAAAGGATCTGGTGTGGTGTGCACCGTGGCTCCTGGCCCAGGCTGGATCCGAGCAGTaGGGCAGGAGGCAAAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: IPGRAKDLVWCAPWLLAQAGSEQ*GRRQRS Trigger: GGACCTTTGCCTCCTGCCCCACTGCTCGGATCCAGC...CTGGGCCAGGAGCCACGGTGCACACCACACCAGATCCTTTGCCCGGCCAGGAAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| CDS-3UTR GCA 90 bp | GCCACCAGGGCAGGATGTGACTCAGTGTCCCCAGTCGGCCTGTATTCCTGGCCGCCTGGACAGGGCGTCTaGAGACCAGTTGCTCCACAG | + |
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Preference number: 4 (lower is better) Translates to: ATRAGCDSVSPVGLYSWPPGQGV*RPVAPQ Trigger: CTGTGGAGCAACTGGTCTGCAGACGCCCTGTCCAGG...CGGCCAGGAATACAGGCCGACTGGGGACACTGAGTCACATCCTGCCCTGGTGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| CDS-3UTR GCA 90 bp | GCCACCAGGGCAGGATGTGACTCAGTGTCCCCAGTCGGCCTGTATTCCTGGCCGGCTGGCCCTGGACACTaGGCTTGCCTTCCTCATTCT | + |
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Preference number: 4 (lower is better) Translates to: ATRAGCDSVSPVGLYSWPAGPGH*ACLPHS Trigger: AGAATGAGGAAGGCAAGCGCAGTGTCCAGGGCCAGC...CGGCCAGGAATACAGGCCGACTGGGGACACTGAGTCACATCCTGCCCTGGTGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| CDS-3UTR CCA 90 bp | GCCACCAGGGCAGGATGTGACTCAGTGTCCCCAGTCGGCCTGTATTCCTGGCCGCCCAGCAGTGACTTCTaGGGACCTGGCACTTCTCTA | + |
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Preference number: 4 (lower is better) Translates to: ATRAGCDSVSPVGLYSWPPSSDF*GPGTSL Trigger: TAGAGAAGTGCCAGGTCCCCAGAAGTCACTGCTGGG...CGGCCAGGAATACAGGCCGACTGGGGACACTGAGTCACATCCTGCCCTGGTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| CDS-3UTR CCA 90 bp | ACCAGGCCACCAGGGCAGGATGTGACTCAGTGTCCCCAGTCGGCCTGTATTCCTGCATGTAGAAGACAGTaGGCTGGCCCTGGACACTGC | + |
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Preference number: 4 (lower is better) Translates to: TRPPGQDVTQCPQSACIPACRRQ*AGPGHC Trigger: GCAGTGTCCAGGGCCAGCCCACTGTCTTCTACATGC...AGGAATACAGGCCGACTGGGGACACTGAGTCACATCCTGCCCTGGTGGCCTGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| CDS-3UTR GCA 90 bp | ACCAGGCCACCAGGGCAGGATGTGACTCAGTGTCCCCAGTCGGCCTGTATTCCTCGTCTGCAGACCAGTTaGTCCACAGCAGGTTGTTGT | + |
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Preference number: 4 (lower is better) Translates to: TRPPGQDVTQCPQSACIPRLQTS*STAGCC Trigger: ACAACAACCTGCTGTGGAGCAACTGGTCTGCAGACG...AGGAATACAGGCCGACTGGGGACACTGAGTCACATCCTGCCCTGGTGGCCTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| CDS-3UTR TCA 90 bp | ACAGATGTATCATTAAAGGTGTCAGTGTACTGGGGAGTCTGCGGCAGTGGGACCCGCACTAGGCAACGATaGGCCAAGGTGCAGCCTTCC | + |
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Preference number: 4 (lower is better) Translates to: TDVSLKVSVYWGVCGSGTRTRQR*AKVQPS Trigger: GGAAGGCTGCACCTTGGCTCATCGTTGCCTAGTGCG...GGTCCCACTGCCGCAGACTCCCCAGTACACTGACACCTTTAATGATACATCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| CDS-3UTR GCA 90 bp | GTCTCTATTTGGGAGACCAGGCCACCAGGGCAGGATGTGACTCAGTGTCCCCAGGGTGATGGTTTCCAGTaGCGAACTGCAGAAATCAGA | + |
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Preference number: 4 (lower is better) Translates to: VSIWETRPPGQDVTQCPQGDGFQ*RTAEIR Trigger: TCTGATTTCTGCAGTTCGGCACTGGAAACCATCACC...CTGGGGACACTGAGTCACATCCTGCCCTGGTGGCCTGGTCTCCCAAATAGAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| CDS-3UTR GCA 90 bp | GCCACCAGGGCAGGATGTGACTCAGTGTCCCCAGTCGGCCTGTATTCCTGGCCGTCTGTCAGACACCTTTaGAATGTAGGGGTAATTTTC | + |
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Preference number: 4 (lower is better) Translates to: ATRAGCDSVSPVGLYSWPSVRHL*NVGVIF Trigger: GAAAATTACCCCTACATTGCAAAGGTGTCTGACAGA...CGGCCAGGAATACAGGCCGACTGGGGACACTGAGTCACATCCTGCCCTGGTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| CDS-3UTR TCA 90 bp | TTCAATAGTGGGAACCAGTGGACAGATGTATCATTAAAGGTGTCAGTGTACTGGCTTCCTCATTCTCACTaGGGACAGTCACGCCGAGGG | + |
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Preference number: 4 (lower is better) Translates to: FNSGNQWTDVSLKVSVYWLPHSH*GQSRRG Trigger: CCCTCGGCGTGACTGTCCTCAGTGAGAATGAGGAAG...CCAGTACACTGACACCTTTAATGATACATCTGTCCACTGGTTCCCACTATTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| CDS-3UTR TCA 90 bp | CCTTCCAGCTTCAATAGTGGGAACCAGTGGACAGATGTATCATTAAAGGTGTCAAAACCTCAGTCTGACTaGACAGAGGGTCATAGACCC | + |
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Preference number: 4 (lower is better) Translates to: PSSFNSGNQWTDVSLKVSKPQSD*TEGHRP Trigger: GGGTCTATGACCCTCTGTTCAGTCAGACTGAGGTTT...TGACACCTTTAATGATACATCTGTCCACTGGTTCCCACTATTGAAGCTGGAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| CDS-3UTR CAA 90 bp | ACCAGGCCACCAGGGCAGGATGTGACTCAGTGTCCCCAGTCGGCCTGTATTCCTTCACATGGGAGGCGCTaGAAGCCAAGGGCTCCTGTG | + |
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Preference number: 5 (lower is better) Translates to: TRPPGQDVTQCPQSACIPSHGRR*KPRAPV Trigger: CACAGGAGCCCTTGGCTTCAAGCGCCTCCCATGTGA...AGGAATACAGGCCGACTGGGGACACTGAGTCACATCCTGCCCTGGTGGCCTGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| CDS GCA 90 bp | GAGCCAAGGTGCAGCCTTCCAAGGGCTTCTGTTAGGGGCTGCAGTTaGTCCAACTGTTTCCTAAGACACTCGGTGATGGTTTCCAGTGCC | + |
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Preference number: 5 (lower is better) Translates to: EPRCSLPRASVRGCS*SNCFLRHSVMVSSA Trigger: GGCACTGGAAACCATCACCGAGTGTCTTAGGAAACAGTTGGAGCAACTGCAGCCCCTAACAGAAGCCCTTGGAAGGCTGCACCTTGGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031289.7 ENSMUST00000146510.8 |
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| CDS GCA 90 bp | CAGTTGCTCCAACTGTTTCCTAAGACACTCGGTGATGGTTTCCAGTaGCGAACTGCAGAAATCAGAGATCCGCAGGTCCTCCTCGGCCTC | + |
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Preference number: 5 (lower is better) Translates to: QLLQLFPKTLGDGFQ*RTAEIRDPQVLLGL Trigger: GAGGCCGAGGAGGACCTGCGGATCTCTGATTTCTGCAGTTCGGCACTGGAAACCATCACCGAGTGTCTTAGGAAACAGTTGGAGCAACTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031289.7 ENSMUST00000146510.8 |
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| CDS GCA 90 bp | AACGATGAGCCAAGGTGCAGCCTTCCAAGGGCTTCTGTTAGGGGCTaGAGTTGCTCCAACTGTTTCCTAAGACACTCGGTGATGGTTTCC | + |
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Preference number: 5 (lower is better) Translates to: NDEPRCSLPRASVRG*SCSNCFLRHSVMVS Trigger: GGAAACCATCACCGAGTGTCTTAGGAAACAGTTGGAGCAACTGCAGCCCCTAACAGAAGCCCTTGGAAGGCTGCACCTTGGCTCATCGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031289.7 ENSMUST00000146510.8 |
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| CDS GCA 90 bp | GGGAGTCTGCGGCAGTGGGACCTCCTCCAGGCCTTTCAGAATCTTTaGAATGTAGGGGTAATTTTCCTGCAGAATCCTCGCCAACAACCT | + |
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Preference number: 5 (lower is better) Translates to: GSLRQWDLLQAFQNL*NVGVIFLQNPRQQP Trigger: AGGTTGTTGGCGAGGATTCTGCAGGAAAATTACCCCTACATTGCAAAGATTCTGAAAGGCCTGGAGGAGGTCCCACTGCCGCAGACTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146510.8 |
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| CDS GCA 90 bp | CAGTGGACAGATGTATCATTAAAGGTGTCAGTGTACTGGGGAGTCTaGGGCAGTGGGACCTCCTCCAGGCCTTTCAGAATCTTTGCAATG | + |
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Preference number: 5 (lower is better) Translates to: QWTDVSLKVSVYWGV*GSGTSSRPFRIFAM Trigger: CATTGCAAAGATTCTGAAAGGCCTGGAGGAGGTCCCACTGCCGCAGACTCCCCAGTACACTGACACCTTTAATGATACATCTGTCCACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146510.8 |
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| CDS-3UTR CAA 90 bp | GGCAGTCCTTCCAGCTTCAATAGTGGGAACCAGTGGACAGATGTATCATTAAAGCCCTGGACACTGCGCTaGCCTTCCTCATTCTCACTG | + |
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Preference number: 5 (lower is better) Translates to: GSPSSFNSGNQWTDVSLKPWTLR*PSSFSL Trigger: CAGTGAGAATGAGGAAGGCAAGCGCAGTGTCCAGGG...CTTTAATGATACATCTGTCCACTGGTTCCCACTATTGAAGCTGGAAGGACTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| CDS CCA 90 bp | AGATGTATCATTAAAGGTGTCAGTGTACTGGGGAGTCTGCGGCAGTaGGACCTCCTCCAGGCCTTTCAGAATCTTTGCAATGTAGGGGTA | + |
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Preference number: 5 (lower is better) Translates to: RCIIKGVSVLGSLRQ*DLLQAFQNLCNVGV Trigger: TACCCCTACATTGCAAAGATTCTGAAAGGCCTGGAGGAGGTCCCACTGCCGCAGACTCCCCAGTACACTGACACCTTTAATGATACATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146510.8 |
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| CDS-3UTR CAA 90 bp | ATGAATAACGTCTCTATTTGGGAGACCAGGCCACCAGGGCAGGATGTGACTCAGTTCTGTCAGACACCTTaGCAATGTAGGGGTAATTTT | + |
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Preference number: 5 (lower is better) Translates to: MNNVSIWETRPPGQDVTQFCQTP*QCRGNF Trigger: AAAATTACCCCTACATTGCAAAGGTGTCTGACAGAA...CTGAGTCACATCCTGCCCTGGTGGCCTGGTCTCCCAAATAGAGACGTTATTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031289.7 |
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| CDS CCA 72 bp | ATAGAGCTGTCCCACAGTGTGGCATGTAGAAGACAGTaGGCTGGCCCTGGACACTGCGCTTGCCTTCCTCAT | + |
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Preference number: 6 (lower is better) Translates to: IELSHSVACRRQ*AGPGHCACLPH Trigger: ATGAGGAAGGCAAGCGCAGTGTCCAGGGCCAGCCCACTGTCTTCTACATGCCACACTGTGGGACAGCTCTAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031289.7 ENSMUST00000146510.8 |
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| CDS GCA 72 bp | CCAAGGTGCAGCCTTCCAAGGGCTTCTGTTAGGGGCTaGAGTTGCTCCAACTGTTTCCTAAGACACTCGGTG | + |
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Preference number: 6 (lower is better) Translates to: PRCSLPRASVRG*SCSNCFLRHSV Trigger: CACCGAGTGTCTTAGGAAACAGTTGGAGCAACTGCAGCCCCTAACAGAAGCCCTTGGAAGGCTGCACCTTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031289.7 ENSMUST00000146510.8 |
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| CDS GCA 72 bp | TGCAGCCTTCCAAGGGCTTCTGTTAGGGGCTGCAGTTaGTCCAACTGTTTCCTAAGACACTCGGTGATGGTT | + |
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Preference number: 6 (lower is better) Translates to: CSLPRASVRGCS*SNCFLRHSVMV Trigger: AACCATCACCGAGTGTCTTAGGAAACAGTTGGAGCAACTGCAGCCCCTAACAGAAGCCCTTGGAAGGCTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031289.7 ENSMUST00000146510.8 |
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| CDS CCA 72 bp | TGGCACTTCTCTAGAAAGAGAAGCATAAAAGCAAGCTaGATCCGAGCAGTGGGGCAGGAGGCAAAGGTCCCA | + |
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Preference number: 6 (lower is better) Translates to: WHFSRKRSIKAS*IRAVGQEAKVP Trigger: TGGGACCTTTGCCTCCTGCCCCACTGCTCGGATCCAGCTTGCTTTTATGCTTCTCTTTCTAGAGAAGTGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031289.7 ENSMUST00000146510.8 |
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| CDS GCA 72 bp | CAACTGTTTCCTAAGACACTCGGTGATGGTTTCCAGTaGCGAACTGCAGAAATCAGAGATCCGCAGGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: QLFPKTLGDGFQ*RTAEIRDPQVL Trigger: GAGGACCTGCGGATCTCTGATTTCTGCAGTTCGGCACTGGAAACCATCACCGAGTGTCTTAGGAAACAGTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031289.7 ENSMUST00000146510.8 |
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| CDS CCA 72 bp | ATTAAAGGTGTCAGTGTACTGGGGAGTCTGCGGCAGTaGGACCTCCTCCAGGCCTTTCAGAATCTTTGCAAT | + |
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Preference number: 6 (lower is better) Translates to: IKGVSVLGSLRQ*DLLQAFQNLCN Trigger: ATTGCAAAGATTCTGAAAGGCCTGGAGGAGGTCCCACTGCCGCAGACTCCCCAGTACACTGACACCTTTAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146510.8 |
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