Pregenerated sensors for SRPK2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062604Ensembl transcript IDs: ENSMUST00000088392.9, ENSMUST00000196929.5, ENSMUST00000197985.5, ENSMUST00000198661.5
Found 142 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCAGTTGTGTCCTCTAAGTCGGCTGCTTTCAGTGTCACCTCCGGCTaGTACTCTCCATCCTGCTGCTCCCCGGAAGCTTCTGCAGAGGTG | + |
|
Preference number: 1 (lower is better) Translates to: SVVSSKSAAFSVTSG*YSPSCCSPEASAEV Trigger: CACCTCTGCAGAAGCTTCCGGGGAGCAGCAGGATGGAGAGTACCAGCCGGAGGTGACACTGAAAGCAGCCGACTTAGAGGACACAACTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR TCA 90 bp | GCTGCTACCTCAGCTGCACTGCAGGCTACCAGCAGCCGATCTGGGTaGGTCTCACGGTCCTCTCTACTGCTTGCCTTTCCTTTAGAAGCA | + |
|
Preference number: 1 (lower is better) Translates to: AATSAALQATSSRSG*VSRSSLLLAFPLEA Trigger: TGCTTCTAAAGGAAAGGCAAGCAGTAGAGAGGACCGTGAGACTCACCCAGATCGGCTGCTGGTAGCCTGCAGTGCAGCTGAGGTAGCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR GCA 90 bp | CCTTCTCATTCATGGGAGGTAAGGAAAAGGCGAGGGAAGGGAAGCTaGCTAGGACGGCATGGGCACGGTCGCTGTTACCTTGAAGCTGTG | + |
|
Preference number: 1 (lower is better) Translates to: PSHSWEVRKRRGKGS*LGRHGHGRCYLEAV Trigger: CACAGCTTCAAGGTAACAGCGACCGTGCCCATGCCGTCCTAGGCAGCTTCCCTTCCCTCGCCTTTTCCTTACCTCCCATGAATGAGAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR GCA 90 bp | GCTGAAACTGTCCTGCTTCTGTCATGGGAGGGACTGCTTTCCTCCTaGTCGGTAAGTGGCGATCCCTCTGAAATCACAGAGCCACAGGCC | + |
|
Preference number: 1 (lower is better) Translates to: AETVLLLSWEGLLSS*SVSGDPSEITEPQA Trigger: GGCCTGTGGCTCTGTGATTTCAGAGGGATCGCCACTTACCGAGCAGGAGGAAAGCAGTCCCTCCCATGACAGAAGCAGGACAGTTTCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR GCA 90 bp | GTGGCCTGGAGCTTATGCAGAACAGGCTGGCCTCAGAGATCTTCCTaGCTCTGCCTCCCAAGTGCTGATATTAAAGGAGTGCACCACCAC | + |
|
Preference number: 1 (lower is better) Translates to: VAWSLCRTGWPQRSS*LCLPSADIKGVHHH Trigger: GTGGTGGTGCACTCCTTTAATATCAGCACTTGGGAGGCAGAGGCAGGAAGATCTCTGAGGCCAGCCTGTTCTGCATAAGCTCCAGGCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR CCA 90 bp | GCCACAGAGGGCATGGCACCTCGTCCAGAACCACTTGGGTTGTTATaGAATGAAAAGTTTGTGCAACTTTCTGAAGCAGTGGAAATCTGC | + |
|
Preference number: 1 (lower is better) Translates to: ATEGMAPRPEPLGLL*NEKFVQLSEAVEIC Trigger: GCAGATTTCCACTGCTTCAGAAAGTTGCACAAACTTTTCATTCCATAACAACCCAAGTGGTTCTGGACGAGGTGCCATGCCCTCTGTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR GCA 90 bp | CCCGCCCTTTTCATTTGGAATATAGCACTGTACATATGGCAAGTCTaGTGCAAACGTGTGATCTCTGTGAAAGTAGTACAGCACATGACC | + |
|
Preference number: 1 (lower is better) Translates to: PALFIWNIALYIWQV*CKRVISVKVVQHMT Trigger: GGTCATGTGCTGTACTACTTTCACAGAGATCACACGTTTGCAGCAGACTTGCCATATGTACAGTGCTATATTCCAAATGAAAAGGGCGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR GCA 90 bp | AGAGATCTTCCTGCCTCTGCCTCCCAAGTGCTGATATTAAAGGAGTaGACCACCACACCCAACCTTTACATTTATTCTTTATCATCATGC | + |
|
Preference number: 1 (lower is better) Translates to: RDLPASASQVLILKE*TTTPNLYIYSLSSC Trigger: GCATGATGATAAAGAATAAATGTAAAGGTTGGGTGTGGTGGTGCACTCCTTTAATATCAGCACTTGGGAGGCAGAGGCAGGAAGATCTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR TCA 90 bp | ATGTTCTCCTTAGGATGCTTACCAAAGAAACCTGAATCTGAAAACTaGCAGGTTCACATTGTGTCCCTCCATGACAATTTCAGACAGACC | + |
|
Preference number: 1 (lower is better) Translates to: MFSLGCLPKKPESEN*QVHIVSLHDNFRQT Trigger: GGTCTGTCTGAAATTGTCATGGAGGGACACAATGTGAACCTGTCAGTTTTCAGATTCAGGTTTCTTTGGTAAGCATCCTAAGGAGAACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR GCA 90 bp | GCCCTTTTCATTTGGAATATAGCACTGTACATATGGCAAGTCTGCTaGAAACGTGTGATCTCTGTGAAAGTAGTACAGCACATGACCTTT | + |
|
Preference number: 1 (lower is better) Translates to: ALFIWNIALYIWQVC*KRVISVKVVQHMTF Trigger: AAAGGTCATGTGCTGTACTACTTTCACAGAGATCACACGTTTGCAGCAGACTTGCCATATGTACAGTGCTATATTCCAAATGAAAAGGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR CCA 90 bp | ATAATTGCTCCCGCCCTTTTCATTTGGAATATAGCACTGTACATATaGCAAGTCTGCTGCAAACGTGTGATCTCTGTGAAAGTAGTACAG | + |
|
Preference number: 1 (lower is better) Translates to: IIAPALFIWNIALYI*QVCCKRVISVKVVQ Trigger: CTGTACTACTTTCACAGAGATCACACGTTTGCAGCAGACTTGCCATATGTACAGTGCTATATTCCAAATGAAAAGGGCGGGAGCAATTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR TCA 90 bp | AGGAAACGCACAGCCTCATTGGAAAAACCCAGCATGCATAGTTTGTaGATGAGTGGCATCGTCTATCTTACTACAGTGTATGATATAAAA | + |
|
Preference number: 1 (lower is better) Translates to: RKRTASLEKPSMHSL*MSGIVYLTTVYDIK Trigger: TTTTATATCATACACTGTAGTAAGATAGACGATGCCACTCATTCACAAACTATGCATGCTGGGTTTTTCCAATGAGGCTGTGCGTTTCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR CCA 90 bp | TTCACATTGTGTCCCTCCATGACAATTTCAGACAGACCAAAGAAATaGCAATATTCACCCTTAAAATCACTTGTCCACAGACTTAAAGTA | + |
|
Preference number: 1 (lower is better) Translates to: FTLCPSMTISDRPKK*QYSPLKSLVHRLKV Trigger: TACTTTAAGTCTGTGGACAAGTGATTTTAAGGGTGAATATTGCCATTTCTTTGGTCTGTCTGAAATTGTCATGGAGGGACACAATGTGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR GCA 90 bp | GTAGATAATGAAGCTATAACTAAAGCCTCGTTCATAAATCCATTCTaGCTTAATGTATGTTCTGTGACAATCTGCAACTCCTTTAGCTTT | + |
|
Preference number: 1 (lower is better) Translates to: VDNEAITKASFINPF*LNVCSVTICNSFSF Trigger: AAAGCTAAAGGAGTTGCAGATTGTCACAGAACATACATTAAGGCAGAATGGATTTATGAACGAGGCTTTAGTTATAGCTTCATTATCTAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR GCA 90 bp | AAAAGGCGAGGGAAGGGAAGCTGCCTAGGACGGCATGGGCACGGTCGCTGTTACTCTTCATCCTCCAGCTaGTGCTCCAGTGAGAACGGG | + |
|
Preference number: 2 (lower is better) Translates to: KRRGKGSCLGRHGHGRCYSSSSS*CSSENG Trigger: CCCGTTCTCACTGGAGCAGCAGCTGGAGGATGAAGA...GTAACAGCGACCGTGCCCATGCCGTCCTAGGCAGCTTCCCTTCCCTCGCCTTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR-3UTR GCA 90 bp | GAAATGGCCTTCTCATTCATGGGAGGTAAGGAAAAGGCGAGGGAAGGGAAGCTGCGAGGGAAGGGAAGCTaGCTAGGACGGCATGGGCAC | + |
|
Preference number: 2 (lower is better) Translates to: EMAFSFMGGKEKAREGKLRGKGS*LGRHGH Trigger: GTGCCCATGCCGTCCTAGGCAGCTTCCCTTCCCTCG...CAGCTTCCCTTCCCTCGCCTTTTCCTTACCTCCCATGAATGAGAAGGCCATTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR GCA 90 bp | AAAAGGCGAGGGAAGGGAAGCTGCCTAGGACGGCATGGGCACGGTCGCTGTTACGAAGCAGTGGAAATCTaGAACATGCAATGTAGGCCA | + |
|
Preference number: 2 (lower is better) Translates to: KRRGKGSCLGRHGHGRCYEAVEI*NMQCRP Trigger: TGGCCTACATTGCATGTTGCAGATTTCCACTGCTTC...GTAACAGCGACCGTGCCCATGCCGTCCTAGGCAGCTTCCCTTCCCTCGCCTTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR GCA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCACGAGGGAAGGGAAGCTaGCTAGGACGGCATGGGCAC | + |
|
Preference number: 2 (lower is better) Translates to: MTQQPPFVIGSIRKRTASRGKGS*LGRHGH Trigger: GTGCCCATGCCGTCCTAGGCAGCTTCCCTTCCCTCG...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR CCA 90 bp | AAAAGGCGAGGGAAGGGAAGCTGCCTAGGACGGCATGGGCACGGTCGCTGTTACAAAAGCGCTCAGGACTaGGTAGCTTTTCTGAATGTG | + |
|
Preference number: 2 (lower is better) Translates to: KRRGKGSCLGRHGHGRCYKSAQD*VAFLNV Trigger: CACATTCAGAAAAGCTACCCAGTCCTGAGCGCTTTT...GTAACAGCGACCGTGCCCATGCCGTCCTAGGCAGCTTCCCTTCCCTCGCCTTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR GCA 90 bp | GAAATGGCCTTCTCATTCATGGGAGGTAAGGAAAAGGCGAGGGAAGGGAAGCTGAGGCTGAAACTGTCCTaGTTCTGTCATGGGAGGGAC | + |
|
Preference number: 2 (lower is better) Translates to: EMAFSFMGGKEKAREGKLRLKLS*FCHGRD Trigger: GTCCCTCCCATGACAGAAGCAGGACAGTTTCAGCCT...CAGCTTCCCTTCCCTCGCCTTTTCCTTACCTCCCATGAATGAGAAGGCCATTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR-3UTR GCA 90 bp | AAAAGGCGAGGGAAGGGAAGCTGCCTAGGACGGCATGGGCACGGTCGCTGTTACTCTGTGAAATGTTTATaGACCCAACAAGCATTTCCC | + |
|
Preference number: 2 (lower is better) Translates to: KRRGKGSCLGRHGHGRCYSVKCL*TQQAFP Trigger: GGGAAATGCTTGTTGGGTGCATAAACATTTCACAGA...GTAACAGCGACCGTGCCCATGCCGTCCTAGGCAGCTTCCCTTCCCTCGCCTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR CAA 90 bp | CCTGGTCTTCAACTTCACCATTATCCTTTGCTGTCTCTTCCTCAGTaGTGTCCTCTAAGTCGGCTGCTTTCAGTGTCACCTCCGGCTGGT | + |
|
Preference number: 2 (lower is better) Translates to: PGLQLHHYPLLSLPQ*CPLSRLLSVSPPAG Trigger: ACCAGCCGGAGGTGACACTGAAAGCAGCCGACTTAGAGGACACAACTGAGGAAGAGACAGCAAAGGATAATGGTGAAGTTGAAGACCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR-3UTR CCA 90 bp | AAAAGGCGAGGGAAGGGAAGCTGCCTAGGACGGCATGGGCACGGTCGCTGTTACCTATTAAAACCTCTATaGACCTATACTGACGTGTCT | + |
|
Preference number: 2 (lower is better) Translates to: KRRGKGSCLGRHGHGRCYLLKPL*TYTDVS Trigger: AGACACGTCAGTATAGGTCCATAGAGGTTTTAATAG...GTAACAGCGACCGTGCCCATGCCGTCCTAGGCAGCTTCCCTTCCCTCGCCTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR-3UTR CCA 90 bp | GAAATGGCCTTCTCATTCATGGGAGGTAAGGAAAAGGCGAGGGAAGGGAAGCTGTGGCCTTCTCATTCATaGGAGGTAAGGAAAAGGCGA | + |
|
Preference number: 2 (lower is better) Translates to: EMAFSFMGGKEKAREGKLWPSHS*EVRKRR Trigger: TCGCCTTTTCCTTACCTCCCATGAATGAGAAGGCCA...CAGCTTCCCTTCCCTCGCCTTTTCCTTACCTCCCATGAATGAGAAGGCCATTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR GCA 90 bp | GAAATGGCCTTCTCATTCATGGGAGGTAAGGAAAAGGCGAGGGAAGGGAAGCTGGAAGCAGTGGAAATCTaGAACATGCAATGTAGGCCA | + |
|
Preference number: 2 (lower is better) Translates to: EMAFSFMGGKEKAREGKLEAVEI*NMQCRP Trigger: TGGCCTACATTGCATGTTGCAGATTTCCACTGCTTC...CAGCTTCCCTTCCCTCGCCTTTTCCTTACCTCCCATGAATGAGAAGGCCATTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR CCA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCATTATGCAGAACAGGCTaGCCTCAGAGATCTTCCTGC | + |
|
Preference number: 2 (lower is better) Translates to: MTQQPPFVIGSIRKRTASLCRTG*PQRSSC Trigger: GCAGGAAGATCTCTGAGGCCAGCCTGTTCTGCATAA...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR CCA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCATGGCCTTCTCATTCATaGGAGGTAAGGAAAAGGCGA | + |
|
Preference number: 2 (lower is better) Translates to: MTQQPPFVIGSIRKRTASWPSHS*EVRKRR Trigger: TCGCCTTTTCCTTACCTCCCATGAATGAGAAGGCCA...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR GCA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCAAGGGGAGGAAACCATTaGACTTACGATGAAACACTG | + |
|
Preference number: 2 (lower is better) Translates to: MTQQPPFVIGSIRKRTASRGGNH*TYDETL Trigger: CAGTGTTTCATCGTAAGTGCAATGGTTTCCTCCCCT...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR GCA 90 bp | TTACTCATACCTGTTAAGTTATGCATGGTGCAGGGAATATGGACAAACAAGCAGCCTCAGAGATCTTCCTaGCTCTGCCTCCCAAGTGCT | + |
|
Preference number: 2 (lower is better) Translates to: LLIPVKLCMVQGIWTNKQPQRSS*LCLPSA Trigger: AGCACTTGGGAGGCAGAGGCAGGAAGATCTCTGAGG...CTGCTTGTTTGTCCATATTCCCTGCACCATGCATAACTTAACAGGTATGAGTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR CCA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCAAACGCACAGCCTCATTaGAAAAACCCAGCATGCATA | + |
|
Preference number: 2 (lower is better) Translates to: MTQQPPFVIGSIRKRTASNAQPH*KNPACI Trigger: TATGCATGCTGGGTTTTTCCAATGAGGCTGTGCGTT...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR TCA 90 bp | GAAATGGCCTTCTCATTCATGGGAGGTAAGGAAAAGGCGAGGGAAGGGAAGCTGTGGGTTGTTATGGAATaGAAAGTTTGTGCAACTTTC | + |
|
Preference number: 2 (lower is better) Translates to: EMAFSFMGGKEKAREGKLWVVME*KVCATF Trigger: GAAAGTTGCACAAACTTTTCATTCCATAACAACCCA...CAGCTTCCCTTCCCTCGCCTTTTCCTTACCTCCCATGAATGAGAAGGCCATTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR GCA 90 bp | ACCATATGGTACCCAATCACAAAAGTGTATGCTAGAACTCCTTGGTATATCATATCATCCTCCAGCTGCTaGTCCAGTGAGAACGGGCCA | + |
|
Preference number: 2 (lower is better) Translates to: TIWYPITKVYARTPWYIISSSSC*SSENGP Trigger: TGGCCCGTTCTCACTGGAGCAGCAGCTGGAGGATGA...TATGATATACCAAGGAGTTCTAGCATACACTTTTGTGATTGGGTACCATATGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR-3UTR CCA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCAGTAGGTCCAATGTACTaGGAGAAATTTGCTAGCTCA | + |
|
Preference number: 2 (lower is better) Translates to: MTQQPPFVIGSIRKRTASVGPMY*EKFASS Trigger: TGAGCTAGCAAATTTCTCCCAGTACATTGGACCTAC...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR CCA 90 bp | GAAATGGCCTTCTCATTCATGGGAGGTAAGGAAAAGGCGAGGGAAGGGAAGCTGTCTTCTTTCTCTTCCTaGTCTTCAACTTCACCATTA | + |
|
Preference number: 2 (lower is better) Translates to: EMAFSFMGGKEKAREGKLSSFSS*SSTSPL Trigger: TAATGGTGAAGTTGAAGACCAGGAAGAGAAAGAAGA...CAGCTTCCCTTCCCTCGCCTTTTCCTTACCTCCCATGAATGAGAAGGCCATTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR-3UTR TCA 90 bp | TCCATGACAATTTCAGACAGACCAAAGAAATGGCAATATTCACCCTTAAAATCACGGTCGCTGTTACCTTaGAGCTGTGAGGAGTGCTCG | + |
|
Preference number: 2 (lower is better) Translates to: SMTISDRPKKWQYSPLKSRSLLP*SCEECS Trigger: CGAGCACTCCTCACAGCTTCAAGGTAACAGCGACCG...TGATTTTAAGGGTGAATATTGCCATTTCTTTGGTCTGTCTGAAATTGTCATGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR CCA 90 bp | GAAATGGCCTTCTCATTCATGGGAGGTAAGGAAAAGGCGAGGGAAGGGAAGCTGCTTATGTTGTCCATTTaGCAATTCACCATTGAATTG | + |
|
Preference number: 2 (lower is better) Translates to: EMAFSFMGGKEKAREGKLLMLSI*QFTIEL Trigger: CAATTCAATGGTGAATTGCCAAATGGACAACATAAG...CAGCTTCCCTTCCCTCGCCTTTTCCTTACCTCCCATGAATGAGAAGGCCATTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR-3UTR CCA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCACCGGGTTTTTGTTTTTaGCAAATCTCCAGTACTAGA | + |
|
Preference number: 2 (lower is better) Translates to: MTQQPPFVIGSIRKRTASPGFCF*QISSTR Trigger: TCTAGTACTGGAGATTTGCCAAAAACAAAAACCCGG...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR-3UTR GCA 90 bp | ACCATATGGTACCCAATCACAAAAGTGTATGCTAGAACTCCTTGGTATATCATATCCCCAGGACCATGGTaGACAGGAAGCAAAGTGTCA | + |
|
Preference number: 2 (lower is better) Translates to: TIWYPITKVYARTPWYIISPGPW*TGSKVS Trigger: TGACACTTTGCTTCCTGTGCACCATGGTCCTGGGGA...TATGATATACCAAGGAGTTCTAGCATACACTTTTGTGATTGGGTACCATATGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR GCA 90 bp | ACCATATGGTACCCAATCACAAAAGTGTATGCTAGAACTCCTTGGTATATCATAGAGTGCTCGGTCCACTaGGTTGCAAACTGTCTAAGC | + |
|
Preference number: 2 (lower is better) Translates to: TIWYPITKVYARTPWYIIECSVH*VANCLS Trigger: GCTTAGACAGTTTGCAACGCAGTGGACCGAGCACTC...TATGATATACCAAGGAGTTCTAGCATACACTTTTGTGATTGGGTACCATATGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR GCA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCATTAAGTTATGCATGGTaGAGGGAATATGGACAAACA | + |
|
Preference number: 2 (lower is better) Translates to: MTQQPPFVIGSIRKRTASLSYAW*REYGQT Trigger: TGTTTGTCCATATTCCCTGCACCATGCATAACTTAA...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR CCA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCACCACTTGGGTTGTTATaGAATGAAAAGTTTGTGCAA | + |
|
Preference number: 2 (lower is better) Translates to: MTQQPPFVIGSIRKRTASPLGLL*NEKFVQ Trigger: TTGCACAAACTTTTCATTCCATAACAACCCAAGTGG...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR CAA 90 bp | TCTCAGGAGTGGCCCTATTTACCACCTTCCAAACATGTGACACAATaGGGCCCAGTATATAAATTTTGTGCATCAGGAAAAACAGCAAAC | + |
|
Preference number: 2 (lower is better) Translates to: SQEWPYLPPSKHVTQ*GPVYKFCASGKTAN Trigger: GTTTGCTGTTTTTCCTGATGCACAAAATTTATATACTGGGCCCAATTGTGTCACATGTTTGGAAGGTGGTAAATAGGGCCACTCCTGAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR GCA 90 bp | TTTTACTCATACCTGTTAAGTTATGCATGGTGCAGGGAATATGGACAAACAAGCTTTCTCTCTTTAAAGTaGCACAGAGGGCATGGCACC | + |
|
Preference number: 2 (lower is better) Translates to: FYSYLLSYAWCREYGQTSFLSLK*HRGHGT Trigger: GGTGCCATGCCCTCTGTGGCACTTTAAAGAGAGAAA...GCTTGTTTGTCCATATTCCCTGCACCATGCATAACTTAACAGGTATGAGTAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR GCA 90 bp | TCCATGACAATTTCAGACAGACCAAAGAAATGGCAATATTCACCCTTAAAATCAGAGTGCTCGGTCCACTaGGTTGCAAACTGTCTAAGC | + |
|
Preference number: 2 (lower is better) Translates to: SMTISDRPKKWQYSPLKSECSVH*VANCLS Trigger: GCTTAGACAGTTTGCAACGCAGTGGACCGAGCACTC...TGATTTTAAGGGTGAATATTGCCATTTCTTTGGTCTGTCTGAAATTGTCATGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR GCA 90 bp | ACCATATGGTACCCAATCACAAAAGTGTATGCTAGAACTCCTTGGTATATCATATTTCTCTCTTTAAAGTaGCACAGAGGGCATGGCACC | + |
|
Preference number: 2 (lower is better) Translates to: TIWYPITKVYARTPWYIIFLSLK*HRGHGT Trigger: GGTGCCATGCCCTCTGTGGCACTTTAAAGAGAGAAA...TATGATATACCAAGGAGTTCTAGCATACACTTTTGTGATTGGGTACCATATGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR GCA 90 bp | ACCATATGGTACCCAATCACAAAAGTGTATGCTAGAACTCCTTGGTATATCATAAAACTGTATGCGGTCTaGAAAGGGGAAATGGCCTTC | + |
|
Preference number: 2 (lower is better) Translates to: TIWYPITKVYARTPWYIIKLYAV*KGEMAF Trigger: GAAGGCCATTTCCCCTTTGCAGACCGCATACAGTTT...TATGATATACCAAGGAGTTCTAGCATACACTTTTGTGATTGGGTACCATATGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR CCA 90 bp | GTGCTGATATTAAAGGAGTGCACCACCACACCCAACCTTTACATTTATTCTTTAAAAAGCGCTCAGGACTaGGTAGCTTTTCTGAATGTG | + |
|
Preference number: 2 (lower is better) Translates to: VLILKECTTTPNLYIYSLKSAQD*VAFLNV Trigger: CACATTCAGAAAAGCTACCCAGTCCTGAGCGCTTTT...TAAAGAATAAATGTAAAGGTTGGGTGTGGTGGTGCACTCCTTTAATATCAGCAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR CCA 90 bp | TTTTACTCATACCTGTTAAGTTATGCATGGTGCAGGGAATATGGACAAACAAGCAACGCACAGCCTCATTaGAAAAACCCAGCATGCATA | + |
|
Preference number: 2 (lower is better) Translates to: FYSYLLSYAWCREYGQTSNAQPH*KNPACI Trigger: TATGCATGCTGGGTTTTTCCAATGAGGCTGTGCGTT...GCTTGTTTGTCCATATTCCCTGCACCATGCATAACTTAACAGGTATGAGTAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR CAA 90 bp | ATACTGAATTTCCTTTGCGTATATAATTGCTCCCGCCCTTTTCATTaGGAATATAGCACTGTACATATGGCAAGTCTGCTGCAAACGTGT | + |
|
Preference number: 2 (lower is better) Translates to: ILNFLCVYNCSRPFH*EYSTVHMASLLQTC Trigger: ACACGTTTGCAGCAGACTTGCCATATGTACAGTGCTATATTCCAAATGAAAAGGGCGGGAGCAATTATATACGCAAAGGAAATTCAGTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR TCA 90 bp | ACCATATGGTACCCAATCACAAAAGTGTATGCTAGAACTCCTTGGTATATCATAAAGCTTCTGCAGAGGTaGTGTTCTCCTCTAGGATTT | + |
|
Preference number: 2 (lower is better) Translates to: TIWYPITKVYARTPWYIIKLLQR*CSPLGF Trigger: AAATCCTAGAGGAGAACATCACCTCTGCAGAAGCTT...TATGATATACCAAGGAGTTCTAGCATACACTTTTGTGATTGGGTACCATATGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR-3UTR GCA 90 bp | TCCATGACAATTTCAGACAGACCAAAGAAATGGCAATATTCACCCTTAAAATCAAGATCTTCCTGCCTCTaGCTCCCAAGTGCTGATATT | + |
|
Preference number: 2 (lower is better) Translates to: SMTISDRPKKWQYSPLKSRSSCL*LPSADI Trigger: AATATCAGCACTTGGGAGGCAGAGGCAGGAAGATCT...TGATTTTAAGGGTGAATATTGCCATTTCTTTGGTCTGTCTGAAATTGTCATGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR TCA 90 bp | TTACTCATACCTGTTAAGTTATGCATGGTGCAGGGAATATGGACAAACAAGCAGTTTCATTCCACACACTaGACATATTTCTCTTGTCCA | + |
|
Preference number: 2 (lower is better) Translates to: LLIPVKLCMVQGIWTNKQFHSTH*TYFSCP Trigger: TGGACAAGAGAAATATGTTCAGTGTGTGGAATGAAA...CTGCTTGTTTGTCCATATTCCCTGCACCATGCATAACTTAACAGGTATGAGTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR TCA 90 bp | TTACTCATACCTGTTAAGTTATGCATGGTGCAGGGAATATGGACAAACAAGCAGAGAGCAAAGGTATGTTaGTTCTGTCTCTTGAAATAC | + |
|
Preference number: 2 (lower is better) Translates to: LLIPVKLCMVQGIWTNKQRAKVC*FCLLKY Trigger: GTATTTCAAGAGACAGAATCAACATACCTTTGCTCT...CTGCTTGTTTGTCCATATTCCCTGCACCATGCATAACTTAACAGGTATGAGTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR TCA 90 bp | ACCATATGGTACCCAATCACAAAAGTGTATGCTAGAACTCCTTGGTATATCATAGTTCTCCTCTGCGATTaGAGAATTCCCGAGAATATT | + |
|
Preference number: 2 (lower is better) Translates to: TIWYPITKVYARTPWYIIVLLCD*RIPENI Trigger: AATATTCTCGGGAATTCTTCAATCGCAGAGGAGAAC...TATGATATACCAAGGAGTTCTAGCATACACTTTTGTGATTGGGTACCATATGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR-3UTR TCA 90 bp | GTGCTGATATTAAAGGAGTGCACCACCACACCCAACCTTTACATTTATTCTTTATGGGTTGTTATGGAATaGAAAGTTTGTGCAACTTTC | + |
|
Preference number: 2 (lower is better) Translates to: VLILKECTTTPNLYIYSLWVVME*KVCATF Trigger: GAAAGTTGCACAAACTTTTCATTCCATAACAACCCA...TAAAGAATAAATGTAAAGGTTGGGTGTGGTGGTGCACTCCTTTAATATCAGCAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR CCA 90 bp | TTACTCATACCTGTTAAGTTATGCATGGTGCAGGGAATATGGACAAACAAGCAGTTCCTTGCTCTTTCTTaGTTCCAACTGATAATTTCT | + |
|
Preference number: 2 (lower is better) Translates to: LLIPVKLCMVQGIWTNKQFLALS*FQLIIS Trigger: AGAAATTATCAGTTGGAACCAAGAAAGAGCAAGGAA...CTGCTTGTTTGTCCATATTCCCTGCACCATGCATAACTTAACAGGTATGAGTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR CCA 90 bp | TTTTACTCATACCTGTTAAGTTATGCATGGTGCAGGGAATATGGACAAACAAGCCCACTTGGGTTGTTATaGAATGAAAAGTTTGTGCAA | + |
|
Preference number: 2 (lower is better) Translates to: FYSYLLSYAWCREYGQTSPLGLL*NEKFVQ Trigger: TTGCACAAACTTTTCATTCCATAACAACCCAAGTGG...GCTTGTTTGTCCATATTCCCTGCACCATGCATAACTTAACAGGTATGAGTAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR TCA 90 bp | ACCATATGGTACCCAATCACAAAAGTGTATGCTAGAACTCCTTGGTATATCATATTTCATTCCACACACTaGACATATTTCTCTTGTCCA | + |
|
Preference number: 2 (lower is better) Translates to: TIWYPITKVYARTPWYIIFHSTH*TYFSCP Trigger: TGGACAAGAGAAATATGTTCAGTGTGTGGAATGAAA...TATGATATACCAAGGAGTTCTAGCATACACTTTTGTGATTGGGTACCATATGGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR TCA 90 bp | ACCATATGGTACCCAATCACAAAAGTGTATGCTAGAACTCCTTGGTATATCATAAGAGCAAAGGTATGTTaGTTCTGTCTCTTGAAATAC | + |
|
Preference number: 2 (lower is better) Translates to: TIWYPITKVYARTPWYIIRAKVC*FCLLKY Trigger: GTATTTCAAGAGACAGAATCAACATACCTTTGCTCT...TATGATATACCAAGGAGTTCTAGCATACACTTTTGTGATTGGGTACCATATGGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR CCA 90 bp | ACCATATGGTACCCAATCACAAAAGTGTATGCTAGAACTCCTTGGTATATCATAAACTTTCTGAAGCAGTaGAAATCTGCAACATGCAAT | + |
|
Preference number: 2 (lower is better) Translates to: TIWYPITKVYARTPWYIINFLKQ*KSATCN Trigger: ATTGCATGTTGCAGATTTCCACTGCTTCAGAAAGTT...TATGATATACCAAGGAGTTCTAGCATACACTTTTGTGATTGGGTACCATATGGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR CAA 90 bp | AGTACAGCACATGACCTTTCCTTTTTATTTCAATACGCTGTCACATaGAAGCACTGGTTGGGCATTTTAATTCATGTTAATAAACCACAA | + |
|
Preference number: 2 (lower is better) Translates to: STAHDLSFLFQYAVT*KHWLGILIHVNKPQ Trigger: TTGTGGTTTATTAACATGAATTAAAATGCCCAACCAGTGCTTCAATGTGACAGCGTATTGAAATAAAAAGGAAAGGTCATGTGCTGTACT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR CAA 90 bp | AAAAGGCGAGGGAAGGGAAGCTGCCTAGGACGGCATGGGCACGGTCGCTGTTACCAGCCGCCCGGGTTTTaGTTTTTGGCAAATCTCCAG | + |
|
Preference number: 3 (lower is better) Translates to: KRRGKGSCLGRHGHGRCYQPPGF*FLANLQ Trigger: CTGGAGATTTGCCAAAAACAAAAACCCGGGCGGCTG...GTAACAGCGACCGTGCCCATGCCGTCCTAGGCAGCTTCCCTTCCCTCGCCTTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR TCA 72 bp | TCAGCTGCACTGCAGGCTACCAGCAGCCGATCTGGGTaGGTCTCACGGTCCTCTCTACTGCTTGCCTTTCCT | + |
|
Preference number: 3 (lower is better) Translates to: SAALQATSSRSG*VSRSSLLLAFP Trigger: AGGAAAGGCAAGCAGTAGAGAGGACCGTGAGACTCACCCAGATCGGCTGCTGGTAGCCTGCAGTGCAGCTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR GCA 72 bp | TTCAGTGTCACCTCCGGCTGGTACTCTCCATCCTGCTaGTCCCCGGAAGCTTCTGCAGAGGTGATGTTCTCC | + |
|
Preference number: 3 (lower is better) Translates to: FSVTSGWYSPSC*SPEASAEVMFS Trigger: GGAGAACATCACCTCTGCAGAAGCTTCCGGGGAGCAGCAGGATGGAGAGTACCAGCCGGAGGTGACACTGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR GCA 72 bp | GCTTTCAGTGTCACCTCCGGCTGGTACTCTCCATCCTaGTGCTCCCCGGAAGCTTCTGCAGAGGTGATGTTC | + |
|
Preference number: 3 (lower is better) Translates to: AFSVTSGWYSPS*CSPEASAEVMF Trigger: GAACATCACCTCTGCAGAAGCTTCCGGGGAGCAGCAGGATGGAGAGTACCAGCCGGAGGTGACACTGAAAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR CCA 72 bp | TCCTCTAAGTCGGCTGCTTTCAGTGTCACCTCCGGCTaGTACTCTCCATCCTGCTGCTCCCCGGAAGCTTCT | + |
|
Preference number: 3 (lower is better) Translates to: SSKSAAFSVTSG*YSPSCCSPEAS Trigger: AGAAGCTTCCGGGGAGCAGCAGGATGGAGAGTACCAGCCGGAGGTGACACTGAAAGCAGCCGACTTAGAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR-3UTR CAA 90 bp | GAAATGGCCTTCTCATTCATGGGAGGTAAGGAAAAGGCGAGGGAAGGGAAGCTGCTCCAGGGCTTCAGCTaGGTGATGTGCCGCAGTTCT | + |
|
Preference number: 3 (lower is better) Translates to: EMAFSFMGGKEKAREGKLLQGFS*VMCRSS Trigger: AGAACTGCGGCACATCACCAAGCTGAAGCCCTGGAG...CAGCTTCCCTTCCCTCGCCTTTTCCTTACCTCCCATGAATGAGAAGGCCATTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR GCA 72 bp | TGCAGAACAGGCTGGCCTCAGAGATCTTCCTGCCTCTaGCTCCCAAGTGCTGATATTAAAGGAGTGCACCAC | + |
|
Preference number: 3 (lower is better) Translates to: CRTGWPQRSSCL*LPSADIKGVHH Trigger: GTGGTGCACTCCTTTAATATCAGCACTTGGGAGGCAGAGGCAGGAAGATCTCTGAGGCCAGCCTGTTCTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR CCA 72 bp | ATGCGGTCTGCAAAGGGGAAATGGCCTTCTCATTCATaGGAGGTAAGGAAAAGGCGAGGGAAGGGAAGCTGC | + |
|
Preference number: 3 (lower is better) Translates to: MRSAKGKWPSHS*EVRKRRGKGSC Trigger: GCAGCTTCCCTTCCCTCGCCTTTTCCTTACCTCCCATGAATGAGAAGGCCATTTCCCCTTTGCAGACCGCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR GCA 72 bp | GAATCATTCATTTTCTTCGGTAGCTGCTACCTCAGCTaGACTGCAGGCTACCAGCAGCCGATCTGGGTGAGT | + |
|
Preference number: 3 (lower is better) Translates to: ESFIFFGSCYLS*TAGYQQPIWVS Trigger: ACTCACCCAGATCGGCTGCTGGTAGCCTGCAGTGCAGCTGAGGTAGCAGCTACCGAAGAAAATGAATGATTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR CAA 90 bp | AAAAGGCGAGGGAAGGGAAGCTGCCTAGGACGGCATGGGCACGGTCGCTGTTACTATGGAATGAAAAGTTaGTGCAACTTTCTGAAGCAG | + |
|
Preference number: 3 (lower is better) Translates to: KRRGKGSCLGRHGHGRCYYGMKS*CNFLKQ Trigger: CTGCTTCAGAAAGTTGCACAAACTTTTCATTCCATA...GTAACAGCGACCGTGCCCATGCCGTCCTAGGCAGCTTCCCTTCCCTCGCCTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR CAA 90 bp | GAAATGGCCTTCTCATTCATGGGAGGTAAGGAAAAGGCGAGGGAAGGGAAGCTGCTTCACCATTATCCTTaGCTGTCTCTTCCTCAGTTG | + |
|
Preference number: 3 (lower is better) Translates to: EMAFSFMGGKEKAREGKLLHHYP*LSLPQL Trigger: CAACTGAGGAAGAGACAGCAAAGGATAATGGTGAAG...CAGCTTCCCTTCCCTCGCCTTTTCCTTACCTCCCATGAATGAGAAGGCCATTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR-3UTR CAA 90 bp | GAAATGGCCTTCTCATTCATGGGAGGTAAGGAAAAGGCGAGGGAAGGGAAGCTGAGTTCTCCTCTGCGATaGAAGAATTCCCGAGAATAT | + |
|
Preference number: 3 (lower is better) Translates to: EMAFSFMGGKEKAREGKLSSPLR*KNSREY Trigger: ATATTCTCGGGAATTCTTCAATCGCAGAGGAGAACT...CAGCTTCCCTTCCCTCGCCTTTTCCTTACCTCCCATGAATGAGAAGGCCATTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR-3UTR CAA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCATATACTCCTCGGGATTaGCACAGTCATCTTCATCGT | + |
|
Preference number: 3 (lower is better) Translates to: MTQQPPFVIGSIRKRTASYTPRD*HSHLHR Trigger: ACGATGAAGATGACTGTGCAAATCCCGAGGAGTATA...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR GCA 72 bp | TTTGTAAGTAAAGAATCATTCATTTTCTTCGGTAGCTaGTACCTCAGCTGCACTGCAGGCTACCAGCAGCCG | + |
|
Preference number: 3 (lower is better) Translates to: FVSKESFIFFGS*YLSCTAGYQQP Trigger: CGGCTGCTGGTAGCCTGCAGTGCAGCTGAGGTAGCAGCTACCGAAGAAAATGAATGATTCTTTACTTACAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR CCA 72 bp | GGCATGGCACCTCGTCCAGAACCACTTGGGTTGTTATaGAATGAAAAGTTTGTGCAACTTTCTGAAGCAGTG | + |
|
Preference number: 3 (lower is better) Translates to: GMAPRPEPLGLL*NEKFVQLSEAV Trigger: CACTGCTTCAGAAAGTTGCACAAACTTTTCATTCCATAACAACCCAAGTGGTTCTGGACGAGGTGCCATGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR CCA 72 bp | AAGAAGGATATGTGTCTTGTTCACACAGGGAAAGATTaGAGGGGACAGGGGAGGAAACCATTGCACTTACGA | + |
|
Preference number: 3 (lower is better) Translates to: KKDMCLVHTGKD*RGQGRKPLHLR Trigger: TCGTAAGTGCAATGGTTTCCTCCCCTGTCCCCTCCAATCTTTCCCTGTGTGAACAAGACACATATCCTTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR GCA 72 bp | CCTGCCTCTGCCTCCCAAGTGCTGATATTAAAGGAGTaGACCACCACACCCAACCTTTACATTTATTCTTTA | + |
|
Preference number: 3 (lower is better) Translates to: PASASQVLILKE*TTTPNLYIYSL Trigger: TAAAGAATAAATGTAAAGGTTGGGTGTGGTGGTGCACTCCTTTAATATCAGCACTTGGGAGGCAGAGGCAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR CAA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCACCAGAACCACTTGGGTaGTTATGGAATGAAAAGTTT | + |
|
Preference number: 3 (lower is better) Translates to: MTQQPPFVIGSIRKRTASPEPLG*LWNEKF Trigger: AAACTTTTCATTCCATAACAACCCAAGTGGTTCTGG...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR TCA 72 bp | CTATGGACCTATACTGACGTGTCTGGATATCCTCTGTaGAATGTTTATGCACCCAACAAGCATTTCCCAGGT | + |
|
Preference number: 3 (lower is better) Translates to: LWTYTDVSGYPL*NVYAPNKHFPG Trigger: ACCTGGGAAATGCTTGTTGGGTGCATAAACATTTCACAGAGGATATCCAGACACGTCAGTATAGGTCCATAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| 3UTR GCA 72 bp | GAAAAGTTTGTGCAACTTTCTGAAGCAGTGGAAATCTaGAACATGCAATGTAGGCCAAAAAGCGCTCAGGAC | + |
|
Preference number: 3 (lower is better) Translates to: EKFVQLSEAVEI*NMQCRPKSAQD Trigger: GTCCTGAGCGCTTTTTGGCCTACATTGCATGTTGCAGATTTCCACTGCTTCAGAAAGTTGCACAAACTTTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR CAA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCAAGGAATGATTTCCCTTaGCCAGACGATAAAATTGTA | + |
|
Preference number: 3 (lower is better) Translates to: MTQQPPFVIGSIRKRTASRNDFP*PDDKIV Trigger: TACAATTTTATCGTCTGGCAAAGGGAAATCATTCCT...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR-3UTR CAA 90 bp | TTACTCATACCTGTTAAGTTATGCATGGTGCAGGGAATATGGACAAACAAGCAGCTTCACTATATAACCTaGGGTGGCCTGGAGCTTATG | + |
|
Preference number: 3 (lower is better) Translates to: LLIPVKLCMVQGIWTNKQLHYIT*GGLELM Trigger: CATAAGCTCCAGGCCACCCAAGGTTATATAGTGAAG...CTGCTTGTTTGTCCATATTCCCTGCACCATGCATAACTTAACAGGTATGAGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR TCA 72 bp | CTCAGGAGTGGCCCTATTTACCACCTTCCAAACATGTaGCACAATTGGGCCCAGTATATAAATTTTGTGCAT | + |
|
Preference number: 3 (lower is better) Translates to: LRSGPIYHLPNM*HNWAQYINFVH Trigger: ATGCACAAAATTTATATACTGGGCCCAATTGTGTCACATGTTTGGAAGGTGGTAAATAGGGCCACTCCTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR TCA 72 bp | ACAGCCTCATTGGAAAAACCCAGCATGCATAGTTTGTaGATGAGTGGCATCGTCTATCTTACTACAGTGTAT | + |
|
Preference number: 3 (lower is better) Translates to: TASLEKPSMHSL*MSGIVYLTTVY Trigger: ATACACTGTAGTAAGATAGACGATGCCACTCATTCACAAACTATGCATGCTGGGTTTTTCCAATGAGGCTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR GCA 72 bp | ATTTGGAATATAGCACTGTACATATGGCAAGTCTGCTaGAAACGTGTGATCTCTGTGAAAGTAGTACAGCAC | + |
|
Preference number: 3 (lower is better) Translates to: IWNIALYIWQVC*KRVISVKVVQH Trigger: GTGCTGTACTACTTTCACAGAGATCACACGTTTGCAGCAGACTTGCCATATGTACAGTGCTATATTCCAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR CAA 90 bp | TTACTCATACCTGTTAAGTTATGCATGGTGCAGGGAATATGGACAAACAAGCAGCCAGAACCACTTGGGTaGTTATGGAATGAAAAGTTT | + |
|
Preference number: 3 (lower is better) Translates to: LLIPVKLCMVQGIWTNKQPEPLG*LWNEKF Trigger: AAACTTTTCATTCCATAACAACCCAAGTGGTTCTGG...CTGCTTGTTTGTCCATATTCCCTGCACCATGCATAACTTAACAGGTATGAGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR CAA 90 bp | GTGCTGATATTAAAGGAGTGCACCACCACACCCAACCTTTACATTTATTCTTTATGTCTAAGCCACGCCTaGTGTTTTAAACAAACACGA | + |
|
Preference number: 3 (lower is better) Translates to: VLILKECTTTPNLYIYSLCLSHA*CFKQTR Trigger: TCGTGTTTGTTTAAAACACAAGGCGTGGCTTAGACA...TAAAGAATAAATGTAAAGGTTGGGTGTGGTGGTGCACTCCTTTAATATCAGCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR TCA 72 bp | CCTCATTGGAAAAACCCAGCATGCATAGTTTGTGAATaGGTGGCATCGTCTATCTTACTACAGTGTATGATA | + |
|
Preference number: 3 (lower is better) Translates to: PHWKNPACIVCE*VASSILLQCMI Trigger: TATCATACACTGTAGTAAGATAGACGATGCCACTCATTCACAAACTATGCATGCTGGGTTTTTCCAATGAGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR GCA 72 bp | TTCATTTGGAATATAGCACTGTACATATGGCAAGTCTaGTGCAAACGTGTGATCTCTGTGAAAGTAGTACAG | + |
|
Preference number: 3 (lower is better) Translates to: FIWNIALYIWQV*CKRVISVKVVQ Trigger: CTGTACTACTTTCACAGAGATCACACGTTTGCAGCAGACTTGCCATATGTACAGTGCTATATTCCAAATGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR CCA 72 bp | CTCATACCTGTTAAGTTATGCATGGTGCAGGGAATATaGACAAACAAGCAGATCTCGTTAAAGAGTAGACTT | + |
|
Preference number: 3 (lower is better) Translates to: LIPVKLCMVQGI*TNKQISLKSRL Trigger: AAGTCTACTCTTTAACGAGATCTGCTTGTTTGTCCATATTCCCTGCACCATGCATAACTTAACAGGTATGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR CAA 90 bp | TTTTACTCATACCTGTTAAGTTATGCATGGTGCAGGGAATATGGACAAACAAGCAGAAGGATATGTGTCTaGTTCACACAGGGAAAGATT | + |
|
Preference number: 3 (lower is better) Translates to: FYSYLLSYAWCREYGQTSRRICV*FTQGKI Trigger: AATCTTTCCCTGTGTGAACAAGACACATATCCTTCT...GCTTGTTTGTCCATATTCCCTGCACCATGCATAACTTAACAGGTATGAGTAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR GCA 72 bp | GAAGCTATAACTAAAGCCTCGTTCATAAATCCATTCTaGCTTAATGTATGTTCTGTGACAATCTGCAACTCC | + |
|
Preference number: 3 (lower is better) Translates to: EAITKASFINPF*LNVCSVTICNS Trigger: GGAGTTGCAGATTGTCACAGAACATACATTAAGGCAGAATGGATTTATGAACGAGGCTTTAGTTATAGCTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR TCA 72 bp | TTAGCTTTGTTGACACTACAGAGAGCAAAGGTATGTTaGTTCTGTCTCTTGAAATACAGGGTAATAAGCAAG | + |
|
Preference number: 3 (lower is better) Translates to: LALLTLQRAKVC*FCLLKYRVISK Trigger: CTTGCTTATTACCCTGTATTTCAAGAGACAGAATCAACATACCTTTGCTCTCTGTAGTGTCAACAAAGCTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| 3UTR TCA 72 bp | CTCTTTAAACAAAACCAAGGGCGAAAGGCATTATTCTaGAATACGTCAAATAGAATGAAGAGGGTTTCAGTG | + |
|
Preference number: 3 (lower is better) Translates to: LFKQNQGRKALF*NTSNRMKRVSV Trigger: CACTGAAACCCTCTTCATTCTATTTGACGTATTTCAGAATAATGCCTTTCGCCCTTGGTTTTGTTTAAAGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR CAA 90 bp | TCCATGACAATTTCAGACAGACCAAAGAAATGGCAATATTCACCCTTAAAATCATTGCCTACTAATGGTTaGTATCCTGGATTCTACAGT | + |
|
Preference number: 3 (lower is better) Translates to: SMTISDRPKKWQYSPLKSLPTNG*YPGFYS Trigger: ACTGTAGAATCCAGGATACAAACCATTAGTAGGCAA...TGATTTTAAGGGTGAATATTGCCATTTCTTTGGTCTGTCTGAAATTGTCATGGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR-3UTR CAA 90 bp | TCCATGACAATTTCAGACAGACCAAAGAAATGGCAATATTCACCCTTAAAATCATATGGAATGAAAAGTTaGTGCAACTTTCTGAAGCAG | + |
|
Preference number: 3 (lower is better) Translates to: SMTISDRPKKWQYSPLKSYGMKS*CNFLKQ Trigger: CTGCTTCAGAAAGTTGCACAAACTTTTCATTCCATA...TGATTTTAAGGGTGAATATTGCCATTTCTTTGGTCTGTCTGAAATTGTCATGGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR GCA 72 bp | ACCACACCCAACCTTTACATTTATTCTTTATCATCATaGTACCAAGAATCAGATATAACCATATGGTACCCA | + |
|
Preference number: 3 (lower is better) Translates to: TTPNLYIYSLSS*YQESDITIWYP Trigger: TGGGTACCATATGGTTATATCTGATTCTTGGTAGCATGATGATAAAGAATAAATGTAAAGGTTGGGTGTGGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR CCA 72 bp | TTATCATCATGCTACCAAGAATCAGATATAACCATATaGTACCCAATCACAAAAGTGTATGCTAGAACTCCT | + |
|
Preference number: 3 (lower is better) Translates to: LSSCYQESDITI*YPITKVYARTP Trigger: AGGAGTTCTAGCATACACTTTTGTGATTGGGTACCATATGGTTATATCTGATTCTTGGTAGCATGATGATAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| CDS-3UTR GCA 90 bp | TTTCAGTGTCACCTCCGGCTGGTACTCTCCATCCTGCTGCTCCCCGGAAGCTTCGGGAGGAGGAGCACCTaGTTTCTGCCACTCCGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: FQCHLRLVLSILLLPGSFGRRST*FLPLRG Trigger: GCCACGGAGTGGCAGAAAGCAGGTGCTCCTCCTCCC...GAAGCTTCCGGGGAGCAGCAGGATGGAGAGTACCAGCCGGAGGTGACACTGAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| CDS-3UTR GCA 90 bp | TTTCAGTGTCACCTCCGGCTGGTACTCTCCATCCTGCTGCTCCCCGGAAGCTTCGGAGCACCTGCTTTCTaGCACTCCGTGGCTTCGGCT | + |
|
Preference number: 4 (lower is better) Translates to: FQCHLRLVLSILLLPGSFGAPAF*HSVASA Trigger: AGCCGAAGCCACGGAGTGGCAGAAAGCAGGTGCTCC...GAAGCTTCCGGGGAGCAGCAGGATGGAGAGTACCAGCCGGAGGTGACACTGAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| CDS-3UTR CCA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCATGGGGGTGCGGGGTCTaGCAGTGGTGGTGGCGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: MTQQPPFVIGSIRKRTASWGCGV*QWWWRW Trigger: CCACCGCCACCACCACTGCCAGACCCCGCACCCCCA...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR GCA 90 bp | TTTCAGTGTCACCTCCGGCTGGTACTCTCCATCCTGCTGCTCCCCGGAAGCTTCGATATTTTTCCTATCTaGAGACCCAGAGGGAGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: FQCHLRLVLSILLLPGSFDIFPI*RPRGRR Trigger: CCTCCTCCCTCTGGGTCTGCAGATAGGAAAAATATC...GAAGCTTCCGGGGAGCAGCAGGATGGAGAGTACCAGCCGGAGGTGACACTGAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| CDS-3UTR TCA 90 bp | AAAAGGCGAGGGAAGGGAAGCTGCCTAGGACGGCATGGGCACGGTCGCTGTTACGTTCTCCTCTGCGATTaGAGAATTCCCGAGAATATT | + |
|
Preference number: 4 (lower is better) Translates to: KRRGKGSCLGRHGHGRCYVLLCD*RIPENI Trigger: AATATTCTCGGGAATTCTTCAATCGCAGAGGAGAAC...GTAACAGCGACCGTGCCCATGCCGTCCTAGGCAGCTTCCCTTCCCTCGCCTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR GCA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCATGGAGCCGTACTCACTaGAGACCCAGAGGGAGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: MTQQPPFVIGSIRKRTASWSRTH*RPRGRR Trigger: CCTCCTCCCTCTGGGTCTGCAGTGAGTACGGCTCCA...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR CCA 90 bp | GAAATGGCCTTCTCATTCATGGGAGGTAAGGAAAAGGCGAGGGAAGGGAAGCTGCTTTCTGCCACTCCGTaGCTTCGGCTGCCATTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: EMAFSFMGGKEKAREGKLLSATP*LRLPFF Trigger: GAAGAATGGCAGCCGAAGCCACGGAGTGGCAGAAAG...CAGCTTCCCTTCCCTCGCCTTTTCCTTACCTCCCATGAATGAGAAGGCCATTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| CDS-3UTR GCA 90 bp | AAAAGGCGAGGGAAGGGAAGCTGCCTAGGACGGCATGGGCACGGTCGCTGTTACGTACTTCAAAGACCATaGAGACATGTATCCCATTCA | + |
|
Preference number: 4 (lower is better) Translates to: KRRGKGSCLGRHGHGRCYVLQRP*RHVSHS Trigger: TGAATGGGATACATGTCTGCATGGTCTTTGAAGTAC...GTAACAGCGACCGTGCCCATGCCGTCCTAGGCAGCTTCCCTTCCCTCGCCTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| CDS-3UTR TCA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCAAGGCTCCGGCCTTTCTaGAGAGGACGACTTCTCAGA | + |
|
Preference number: 4 (lower is better) Translates to: MTQQPPFVIGSIRKRTASRLRPF*RGRLLR Trigger: TCTGAGAAGTCGTCCTCTTCAGAAAGGCCGGAGCCT...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR GCA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCAACCTTTGCAGTAATCTaGGGGGTCCTCCTGCTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: MTQQPPFVIGSIRKRTASTFAVI*GVLLLL Trigger: GAGGAGCAGGAGGACCCCGCAGATTACTGCAAAGGT...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR CCA 90 bp | ACCATATGGTACCCAATCACAAAAGTGTATGCTAGAACTCCTTGGTATATCATACTCCTCCTCTGGCTCTaGGGGTGCGGGGTCTGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: TIWYPITKVYARTPWYIILLLWL*GCGVWQ Trigger: CTGCCAGACCCCGCACCCCCAGAGCCAGAGGAGGAG...TATGATATACCAAGGAGTTCTAGCATACACTTTTGTGATTGGGTACCATATGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR TCA 90 bp | GAAATGGCCTTCTCATTCATGGGAGGTAAGGAAAAGGCGAGGGAAGGGAAGCTGGAAGGACCTGTCGAATaGTACTCTTCACACAACGTA | + |
|
Preference number: 4 (lower is better) Translates to: EMAFSFMGGKEKAREGKLEGPVE*YSSHNV Trigger: TACGTTGTGTGAAGAGTATCATTCGACAGGTCCTTC...CAGCTTCCCTTCCCTCGCCTTTTCCTTACCTCCCATGAATGAGAAGGCCATTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| CDS-3UTR CCA 90 bp | TCCATGACAATTTCAGACAGACCAAAGAAATGGCAATATTCACCCTTAAAATCATGCGGGGTCTGGCAGTaGTGGTGGCGGTGGTGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: SMTISDRPKKWQYSPLKSCGVWQ*WWRWWW Trigger: CCACCACCACCGCCACCACCACTGCCAGACCCCGCA...TGATTTTAAGGGTGAATATTGCCATTTCTTTGGTCTGTCTGAAATTGTCATGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR GCA 90 bp | GAAATGGCCTTCTCATTCATGGGAGGTAAGGAAAAGGCGAGGGAAGGGAAGCTGCATACAGTAGAAAAGTaGCCCCATCCTAGCTTTCTA | + |
|
Preference number: 4 (lower is better) Translates to: EMAFSFMGGKEKAREGKLHTVEK*PHPSFL Trigger: TAGAAAGCTAGGATGGGGGCACTTTTCTACTGTATG...CAGCTTCCCTTCCCTCGCCTTTTCCTTACCTCCCATGAATGAGAAGGCCATTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR GCA 90 bp | ACCATATGGTACCCAATCACAAAAGTGTATGCTAGAACTCCTTGGTATATCATAGGGAGGAGGAGCACCTaGTTTCTGCCACTCCGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: TIWYPITKVYARTPWYIIGRRST*FLPLRG Trigger: GCCACGGAGTGGCAGAAAGCAGGTGCTCCTCCTCCC...TATGATATACCAAGGAGTTCTAGCATACACTTTTGTGATTGGGTACCATATGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| CDS-3UTR TCA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCAGAAGGACCTGTCGAATaGTACTCTTCACACAACGTA | + |
|
Preference number: 4 (lower is better) Translates to: MTQQPPFVIGSIRKRTASEGPVE*YSSHNV Trigger: TACGTTGTGTGAAGAGTATCATTCGACAGGTCCTTC...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| CDS-3UTR GCA 90 bp | ACCATATGGTACCCAATCACAAAAGTGTATGCTAGAACTCCTTGGTATATCATAGGAGCACCTGCTTTCTaGCACTCCGTGGCTTCGGCT | + |
|
Preference number: 4 (lower is better) Translates to: TIWYPITKVYARTPWYIIGAPAF*HSVASA Trigger: AGCCGAAGCCACGGAGTGGCAGAAAGCAGGTGCTCC...TATGATATACCAAGGAGTTCTAGCATACACTTTTGTGATTGGGTACCATATGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| CDS-3UTR GCA 90 bp | GTGCTGATATTAAAGGAGTGCACCACCACACCCAACCTTTACATTTATTCTTTATCATCCTCCAGCTGCTaGTCCAGTGAGAACGGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: VLILKECTTTPNLYIYSLSSSSC*SSENGP Trigger: TGGCCCGTTCTCACTGGAGCAGCAGCTGGAGGATGA...TAAAGAATAAATGTAAAGGTTGGGTGTGGTGGTGCACTCCTTTAATATCAGCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR GCA 90 bp | GAAATGGCCTTCTCATTCATGGGAGGTAAGGAAAAGGCGAGGGAAGGGAAGCTGTCTGTGAAATGTTTATaGACCCAACAAGCATTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: EMAFSFMGGKEKAREGKLSVKCL*TQQAFP Trigger: GGGAAATGCTTGTTGGGTGCATAAACATTTCACAGA...CAGCTTCCCTTCCCTCGCCTTTTCCTTACCTCCCATGAATGAGAAGGCCATTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR CAA 72 bp | CAACTTCACCATTATCCTTTGCTGTCTCTTCCTCAGTaGTGTCCTCTAAGTCGGCTGCTTTCAGTGTCACCT | + |
|
Preference number: 4 (lower is better) Translates to: QLHHYPLLSLPQ*CPLSRLLSVSP Trigger: AGGTGACACTGAAAGCAGCCGACTTAGAGGACACAACTGAGGAAGAGACAGCAAAGGATAATGGTGAAGTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| CDS-3UTR GCA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCAACAAATCTTTTCCCTTaGATATCCCAGCACAGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: MTQQPPFVIGSIRKRTASTNLFP*ISQHSH Trigger: ATGGCTGTGCTGGGATATGCAAGGGAAAAGATTTGT...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR GCA 90 bp | GTGCTGATATTAAAGGAGTGCACCACCACACCCAACCTTTACATTTATTCTTTATACTCTCCATCCTGCTaGTCCCCGGAAGCTTCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: VLILKECTTTPNLYIYSLYSPSC*SPEASA Trigger: TGCAGAAGCTTCCGGGGAGCAGCAGGATGGAGAGTA...TAAAGAATAAATGTAAAGGTTGGGTGTGGTGGTGCACTCCTTTAATATCAGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR TCA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCATCATGCCTGAGATCTTaGAGTCATCAATTAGCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: MTQQPPFVIGSIRKRTASSCLRS*SHQLAE Trigger: TTCAGCTAATTGATGACTTCAAGATCTCAGGCATGA...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| CDS-3UTR GCA 90 bp | ACCATATGGTACCCAATCACAAAAGTGTATGCTAGAACTCCTTGGTATATCATATCTTCATCCTCCAGCTaGTGCTCCAGTGAGAACGGG | + |
|
Preference number: 4 (lower is better) Translates to: TIWYPITKVYARTPWYIISSSSS*CSSENG Trigger: CCCGTTCTCACTGGAGCAGCAGCTGGAGGATGAAGA...TATGATATACCAAGGAGTTCTAGCATACACTTTTGTGATTGGGTACCATATGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR GCA 90 bp | GTGCTGATATTAAAGGAGTGCACCACCACACCCAACCTTTACATTTATTCTTTAGATGATAGCCACCTTTaGAGTAATCTGCGGGGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: VLILKECTTTPNLYIYSLDDSHL*SNLRGP Trigger: AGGACCCCGCAGATTACTGCAAAGGTGGCTATCATC...TAAAGAATAAATGTAAAGGTTGGGTGTGGTGGTGCACTCCTTTAATATCAGCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR CCA 90 bp | TTTTACTCATACCTGTTAAGTTATGCATGGTGCAGGGAATATGGACAAACAAGCGGGCCATTTTCAATATaGCCATTGGCTTTCGGGGAC | + |
|
Preference number: 4 (lower is better) Translates to: FYSYLLSYAWCREYGQTSGPFSI*PLAFGD Trigger: GTCCCCGAAAGCCAATGGCCATATTGAAAATGGCCC...GCTTGTTTGTCCATATTCCCTGCACCATGCATAACTTAACAGGTATGAGTAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR CAA 72 bp | CAAAGAAACCTGAATCTGAAAACTGACAGGTTCACATaGTGTCCCTCCATGACAATTTCAGACAGACCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: QRNLNLKTDRFT*CPSMTISDRPK Trigger: CTTTGGTCTGTCTGAAATTGTCATGGAGGGACACAATGTGAACCTGTCAGTTTTCAGATTCAGGTTTCTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR CAA 72 bp | TTCCTTTGCGTATATAATTGCTCCCGCCCTTTTCATTaGGAATATAGCACTGTACATATGGCAAGTCTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: FLCVYNCSRPFH*EYSTVHMASLL Trigger: CAGCAGACTTGCCATATGTACAGTGCTATATTCCAAATGAAAAGGGCGGGAGCAATTATATACGCAAAGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR TCA 90 bp | TTTTACTCATACCTGTTAAGTTATGCATGGTGCAGGGAATATGGACAAACAAGCAAGCTTCTGCAGAGGTaGTGTTCTCCTCTAGGATTT | + |
|
Preference number: 4 (lower is better) Translates to: FYSYLLSYAWCREYGQTSKLLQR*CSPLGF Trigger: AAATCCTAGAGGAGAACATCACCTCTGCAGAAGCTT...GCTTGTTTGTCCATATTCCCTGCACCATGCATAACTTAACAGGTATGAGTAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR GCA 90 bp | GTGCTGATATTAAAGGAGTGCACCACCACACCCAACCTTTACATTTATTCTTTAAAATGTCTGCAGGTGTaGTGTAGCCTGCTCCTATTA | + |
|
Preference number: 4 (lower is better) Translates to: VLILKECTTTPNLYIYSLKCLQV*CSLLLL Trigger: TAATAGGAGCAGGCTACAGCACACCTGCAGACATTT...TAAAGAATAAATGTAAAGGTTGGGTGTGGTGGTGCACTCCTTTAATATCAGCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR CAA 72 bp | TGGCCCTATTTACCACCTTCCAAACATGTGACACAATaGGGCCCAGTATATAAATTTTGTGCATCAGGAAAA | + |
|
Preference number: 4 (lower is better) Translates to: WPYLPPSKHVTQ*GPVYKFCASGK Trigger: TTTTCCTGATGCACAAAATTTATATACTGGGCCCAATTGTGTCACATGTTTGGAAGGTGGTAAATAGGGCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR CCA 90 bp | TTTTACTCATACCTGTTAAGTTATGCATGGTGCAGGGAATATGGACAAACAAGCCCGGGTTTTTGTTTTTaGCAAATCTCCAGTACTAGA | + |
|
Preference number: 4 (lower is better) Translates to: FYSYLLSYAWCREYGQTSPGFCF*QISSTR Trigger: TCTAGTACTGGAGATTTGCCAAAAACAAAAACCCGG...GCTTGTTTGTCCATATTCCCTGCACCATGCATAACTTAACAGGTATGAGTAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR CCA 90 bp | TTTTACTCATACCTGTTAAGTTATGCATGGTGCAGGGAATATGGACAAACAAGCTCTTCTTTCTCTTCCTaGTCTTCAACTTCACCATTA | + |
|
Preference number: 4 (lower is better) Translates to: FYSYLLSYAWCREYGQTSSSFSS*SSTSPL Trigger: TAATGGTGAAGTTGAAGACCAGGAAGAGAAAGAAGA...GCTTGTTTGTCCATATTCCCTGCACCATGCATAACTTAACAGGTATGAGTAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR TCA 90 bp | TCCATGACAATTTCAGACAGACCAAAGAAATGGCAATATTCACCCTTAAAATCATCATGCCTGAGATCTTaGAGTCATCAATTAGCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: SMTISDRPKKWQYSPLKSSCLRS*SHQLAE Trigger: TTCAGCTAATTGATGACTTCAAGATCTCAGGCATGA...TGATTTTAAGGGTGAATATTGCCATTTCTTTGGTCTGTCTGAAATTGTCATGGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| 3UTR CAA 72 bp | CATGACCTTTCCTTTTTATTTCAATACGCTGTCACATaGAAGCACTGGTTGGGCATTTTAATTCATGTTAAT | + |
|
Preference number: 4 (lower is better) Translates to: HDLSFLFQYAVT*KHWLGILIHVN Trigger: ATTAACATGAATTAAAATGCCCAACCAGTGCTTCAATGTGACAGCGTATTGAAATAAAAAGGAAAGGTCATG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR CAA 90 bp | AAAAGGCGAGGGAAGGGAAGCTGCCTAGGACGGCATGGGCACGGTCGCTGTTACACGTACTGGGAGGCCTaGATAGTTGGATTTGATGAT | + |
|
Preference number: 5 (lower is better) Translates to: KRRGKGSCLGRHGHGRCYTYWEA*IVGFDD Trigger: ATCATCAAATCCAACTATCAAGGCCTCCCAGTACGT...GTAACAGCGACCGTGCCCATGCCGTCCTAGGCAGCTTCCCTTCCCTCGCCTTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088392.9 ENSMUST00000196929.5 |
||
| CDS-3UTR CAA 90 bp | TTTCAGTGTCACCTCCGGCTGGTACTCTCCATCCTGCTGCTCCCCGGAAGCTTCACGTACTGGGAGGCCTaGATAGTTGGATTTGATGAT | + |
|
Preference number: 5 (lower is better) Translates to: FQCHLRLVLSILLLPGSFTYWEA*IVGFDD Trigger: ATCATCAAATCCAACTATCAAGGCCTCCCAGTACGT...GAAGCTTCCGGGGAGCAGCAGGATGGAGAGTACCAGCCGGAGGTGACACTGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196929.5 |
||
| CDS-3UTR CAA 90 bp | ATGACTCAGCAGCCACCATTTGTCATAGGCTCTATAAGGAAACGCACAGCCTCACTCCAGGGCTTCAGCTaGGTGATGTGCCGCAGTTCT | + |
|
Preference number: 5 (lower is better) Translates to: MTQQPPFVIGSIRKRTASLQGFS*VMCRSS Trigger: AGAACTGCGGCACATCACCAAGCTGAAGCCCTGGAG...TGAGGCTGTGCGTTTCCTTATAGAGCCTATGACAAATGGTGGCTGCTGAGTCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR CAA 90 bp | ACCATATGGTACCCAATCACAAAAGTGTATGCTAGAACTCCTTGGTATATCATACAGCCGCCCGGGTTTTaGTTTTTGGCAAATCTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: TIWYPITKVYARTPWYIIQPPGF*FLANLQ Trigger: CTGGAGATTTGCCAAAAACAAAAACCCGGGCGGCTG...TATGATATACCAAGGAGTTCTAGCATACACTTTTGTGATTGGGTACCATATGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR CAA 90 bp | TTTTACTCATACCTGTTAAGTTATGCATGGTGCAGGGAATATGGACAAACAAGCTATACTCCTCGGGATTaGCACAGTCATCTTCATCGT | + |
|
Preference number: 5 (lower is better) Translates to: FYSYLLSYAWCREYGQTSYTPRD*HSHLHR Trigger: ACGATGAAGATGACTGTGCAAATCCCGAGGAGTATA...GCTTGTTTGTCCATATTCCCTGCACCATGCATAACTTAACAGGTATGAGTAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR CAA 90 bp | ACCATATGGTACCCAATCACAAAAGTGTATGCTAGAACTCCTTGGTATATCATACTTCACCATTATCCTTaGCTGTCTCTTCCTCAGTTG | + |
|
Preference number: 5 (lower is better) Translates to: TIWYPITKVYARTPWYIILHHYP*LSLPQL Trigger: CAACTGAGGAAGAGACAGCAAAGGATAATGGTGAAG...TATGATATACCAAGGAGTTCTAGCATACACTTTTGTGATTGGGTACCATATGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS-3UTR CAA 90 bp | GTGCTGATATTAAAGGAGTGCACCACCACACCCAACCTTTACATTTATTCTTTAAGTTCTCCTCTGCGATaGAAGAATTCCCGAGAATAT | + |
|
Preference number: 5 (lower is better) Translates to: VLILKECTTTPNLYIYSLSSPLR*KNSREY Trigger: ATATTCTCGGGAATTCTTCAATCGCAGAGGAGAACT...TAAAGAATAAATGTAAAGGTTGGGTGTGGTGGTGCACTCCTTTAATATCAGCAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088392.9 |
||
| CDS CCA 72 bp | CAGAATCTCCTCCTCTGGCTCTGGGGGTGCGGGGTCTaGCAGTGGTGGTGGCGGTGGTGGTGGTGGAGGAGG | + |
|
Preference number: 6 (lower is better) Translates to: QNLLLWLWGCGV*QWWWRWWWWRR Trigger: CCTCCTCCACCACCACCACCGCCACCACCACTGCCAGACCCCGCACCCCCAGAGCCAGAGGAGGAGATTCTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000088392.9 ENSMUST00000197985.5 ENSMUST00000198661.5 |
||