Pregenerated sensors for SRP9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026511

Ensembl transcript IDs: ENSMUST00000027792.6, ENSMUST00000111018.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	CCATTACGTAAGTATATCCTTCCCAACACTCTCAGTTTCAAAAGCTaGTTACTTCCCAATAACGGAACAGTCGTCTTCATGTCAAACCAT	+
Preference number: 1 (lower is better) Translates to: PLRKYILPNTLSFKS*LLPNNGTVVFMSNH Trigger: ATGGTTTGACATGAAGACGACTGTTCCGTTATTGGGAAGTAATCAGCTTTTGAAACTGAGAGTGTTGGGAAGGATATACTTACGTAATGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027792.6 ENSMUST00000111018.2
3UTR-3UTR TCA 90 bp	ACCCCGACATTCCTACTCTCTAAAGCAAACTTTAGGACGCAGGCTGGTCTCTCGCTCAGTTTCAAAAGCTaGTTACTTCCCAATAACGGA	+
Preference number: 2 (lower is better) Translates to: TPTFLLSKANFRTQAGLSLSFKS*LLPNNG Trigger: TCCGTTATTGGGAAGTAATCAGCTTTTGAAACTGAG...CGAGAGACCAGCCTGCGTCCTAAAGTTTGCTTTAGAGAGTAGGAATGTCGGGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027792.6 ENSMUST00000111018.2
3UTR CCA 72 bp	TTTACAAATACAAGCTACATAGAAACGGTGGATTTGTaGTTTATTAGGAAGCTAGCAGTTCTGAGAGGCATG	+
Preference number: 3 (lower is better) Translates to: FTNTSYIETVDL*FIRKLAVLRGM Trigger: CATGCCTCTCAGAACTGCTAGCTTCCTAATAAACCACAAATCCACCGTTTCTATGTAGCTTGTATTTGTAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027792.6
3UTR CAA 72 bp	AAAGCAAACTTTAGGACGCAGGCTGGTCTCTCGGCTTaGACAGCTCCATTACGTAAGTATATCCTTCCCAAC	+
Preference number: 4 (lower is better) Translates to: KANFRTQAGLSA*TAPLRKYILPN Trigger: GTTGGGAAGGATATACTTACGTAATGGAGCTGTCAAAGCCGAGAGACCAGCCTGCGTCCTAAAGTTTGCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027792.6 ENSMUST00000111018.2
CDS-3UTR TCA 90 bp	GAAACCCCGACATTCCTACTCTCTAAAGCAAACTTTAGGACGCAGGCTGGTCTCGATCATCCGTTACTTTaGTACACAAATTCCCATCAA	+
Preference number: 4 (lower is better) Translates to: ETPTFLLSKANFRTQAGLDHPLL*YTNSHQ Trigger: TTGATGGGAATTTGTGTATCAAAGTAACGGATGATC...GAGACCAGCCTGCGTCCTAAAGTTTGCTTTAGAGAGTAGGAATGTCGGGGTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027792.6
3UTR CAA 72 bp	GACTTTACAAATACAAGCTACATAGAAACGGTGGATTaGTGGTTTATTAGGAAGCTAGCAGTTCTGAGAGGC	+
Preference number: 4 (lower is better) Translates to: DFTNTSYIETVD*WFIRKLAVLRG Trigger: GCCTCTCAGAACTGCTAGCTTCCTAATAAACCACAAATCCACCGTTTCTATGTAGCTTGTATTTGTAAAGTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027792.6
CDS CAA 72 bp	GTTCTGTACACCAAACAAACTAGATCATCCGTTACTTaGATACACAAATTCCCATCAACATGCCTGTATTTG	+
Preference number: 6 (lower is better) Translates to: VLYTKQTRSSVT*IHKFPSTCLYL Trigger: CAAATACAGGCATGTTGATGGGAATTTGTGTATCAAAGTAACGGATGATCTAGTTTGTTTGGTGTACAGAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027792.6

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu