Pregenerated sensors for SRP72 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036323Ensembl transcript IDs: ENSMUST00000101087.10, ENSMUST00000120550.2
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CATAATCTGAAAATGGAAACAACAAAGGTACAAAGGAGTCAGATGTaGACAAATACACACACACGAGAGAGAGTCCCAATTCCAGTATCA | + |
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Preference number: 1 (lower is better) Translates to: HNLKMETTKVQRSQM*TNTHTRERVPIPVS Trigger: TGATACTGGAATTGGGACTCTCTCTCGTGTGTGTGTATTTGTGCACATCTGACTCCTTTGTACCTTTGTTGTTTCCATTTTCAGATTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| 3UTR-3UTR CCA 90 bp | ATGAATACTAAGCATGGGGAGGCACCCATGTGTGTCTCACAACTGCTGAGTGTGTCAGGACTATGGGGATaGAGGAGGGAGCTCTGTGCT | + |
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Preference number: 2 (lower is better) Translates to: MNTKHGEAPMCVSQLLSVSGLWG*RRELCA Trigger: AGCACAGAGCTCCCTCCTCCATCCCCATAGTCCTGA...CACACTCAGCAGTTGTGAGACACACATGGGTGCCTCCCCATGCTTAGTATTCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| 3UTR-3UTR TCA 90 bp | CTTGTGAACCCACTGGAGAAGTTTCAACAGAAATGCTCAAACACAGCAGCGCTTTTCGATGAGGCAGTCTaGGGAGGATGTCTTCGCATC | + |
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Preference number: 2 (lower is better) Translates to: LVNPLEKFQQKCSNTAALFDEAV*GGCLRI Trigger: GATGCGAAGACATCCTCCTCAGACTGCCTCATCGAA...AAGCGCTGCTGTGTTTGAGCATTTCTGTTGAAACTTCTCCAGTGGGTTCACAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| 3UTR-3UTR GCA 90 bp | CATGTGTGTCTCACAACTGCTGAGTGTGAAAGTGACCTGCTAGCAATGAAAGACGAGGAGGGAGCTCTGTaGTTCCTGCTGTGTTACCTT | + |
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Preference number: 2 (lower is better) Translates to: HVCLTTAECESDLLAMKDEEGAL*FLLCYL Trigger: AAGGTAACACAGCAGGAAGCACAGAGCTCCCTCCTC...GTCTTTCATTGCTAGCAGGTCACTTTCACACTCAGCAGTTGTGAGACACACATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| 3UTR-3UTR TCA 90 bp | CTCCCCAGAGCAGGAAAGCCTTGTGAACCCACTGGAGAAGTTTCAACAGAAATGGAAAGGGGAGCCATCTaGTTATTAATGGGGCCAAAT | + |
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Preference number: 2 (lower is better) Translates to: LPRAGKPCEPTGEVSTEMERGAI*LLMGPN Trigger: ATTTGGCCCCATTAATAATCAGATGGCTCCCCTTTC...CATTTCTGTTGAAACTTCTCCAGTGGGTTCACAAGGCTTTCCTGCTCTGGGGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| 3UTR-3UTR CCA 90 bp | GTGCACAAATACACACACACGAGAGAGAGTCCCAATTCCAGTATCACAGGACAAATCATTTCAGGACTATaGGGATGGAGGAGGGAGCTC | + |
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Preference number: 2 (lower is better) Translates to: VHKYTHTRESPNSSITGQIISGL*GWRREL Trigger: GAGCTCCCTCCTCCATCCCCATAGTCCTGAAATGAT...TTGTCCTGTGATACTGGAATTGGGACTCTCTCTCGTGTGTGTGTATTTGTGCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| 3UTR-3UTR TCA 90 bp | CTTGTGAACCCACTGGAGAAGTTTCAACAGAAATGCTCAAACACAGCAGCGCTTTATCTTCACACTAGTTaGAACAGGAGAAACCCTGTC | + |
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Preference number: 2 (lower is better) Translates to: LVNPLEKFQQKCSNTAALYLHTS*NRRNPV Trigger: GACAGGGTTTCTCCTGTTTCAACTAGTGTGAAGATA...AAGCGCTGCTGTGTTTGAGCATTTCTGTTGAAACTTCTCCAGTGGGTTCACAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| 3UTR-3UTR TCA 90 bp | AGATGTGCACAAATACACACACACGAGAGAGAGTCCCAATTCCAGTATCACAGGGGATGTCTTCGCATCTaGAGTGTAAGAAATCATTTC | + |
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Preference number: 2 (lower is better) Translates to: RCAQIHTHERESQFQYHRGCLRI*SVRNHF Trigger: GAAATGATTTCTTACACTTCAGATGCGAAGACATCC...CCTGTGATACTGGAATTGGGACTCTCTCTCGTGTGTGTGTATTTGTGCACATCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| 3UTR-3UTR CCA 90 bp | AGATGTGCACAAATACACACACACGAGAGAGAGTCCCAATTCCAGTATCACAGGCTCTGTAAAGCTATTTaGTATAAGCAGGCCAATTCG | + |
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Preference number: 2 (lower is better) Translates to: RCAQIHTHERESQFQYHRLCKAI*YKQANS Trigger: CGAATTGGCCTGCTTATACCAAATAGCTTTACAGAG...CCTGTGATACTGGAATTGGGACTCTCTCTCGTGTGTGTGTATTTGTGCACATCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| 3UTR-3UTR TCA 90 bp | AGTGAATGGATGTTTTCCACATTGTTTATTAATGTGCATGCGCACGTGTGTACAATTAAGTGTTCTGACTaGGAAGCCCAAACCCATTTG | + |
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Preference number: 2 (lower is better) Translates to: SEWMFSTLFINVHAHVCTIKCSD*EAQTHL Trigger: CAAATGGGTTTGGGCTTCTCAGTCAGAACACTTAAT...TGTACACACGTGCGCATGCACATTAATAAACAATGTGGAAAACATCCATTCACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| 3UTR-3UTR GCA 90 bp | AGTGAATGGATGTTTTCCACATTGTTTATTAATGTGCATGCGCACGTGTGTACACAAAGGAGTCAGATGTaGACAAATACACACACACGA | + |
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Preference number: 2 (lower is better) Translates to: SEWMFSTLFINVHAHVCTQRSQM*TNTHTR Trigger: TCGTGTGTGTGTATTTGTGCACATCTGACTCCTTTG...TGTACACACGTGCGCATGCACATTAATAAACAATGTGGAAAACATCCATTCACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| 3UTR-3UTR CAA 90 bp | ATGAATACTAAGCATGGGGAGGCACCCATGTGTGTCTCACAACTGCTGAGTGTGACACTGATACATTTTTaGAGGTCTTCAGTGGAACTA | + |
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Preference number: 3 (lower is better) Translates to: MNTKHGEAPMCVSQLLSVTLIHF*RSSVEL Trigger: TAGTTCCACTGAAGACCTCAAAAAATGTATCAGTGT...CACACTCAGCAGTTGTGAGACACACATGGGTGCCTCCCCATGCTTAGTATTCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| 3UTR CCA 72 bp | GAATCAATTATTCCTGTCACAGAGTATTTAGTCCTCTaGAGAGCAATGTCGACCCCTCTTAGACACTGCAGA | + |
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Preference number: 3 (lower is better) Translates to: ESIIPVTEYLVL*RAMSTPLRHCR Trigger: TCTGCAGTGTCTAAGAGGGGTCGACATTGCTCTCCAGAGGACTAAATACTCTGTGACAGGAATAATTGATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| 3UTR GCA 72 bp | AGAAAGGGGAGCCATCTGATTATTAATGGGGCCAAATaGTCTTGTGGCTTTCAATACCGCCTGATATTGTTT | + |
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Preference number: 3 (lower is better) Translates to: RKGSHLIINGAK*SCGFQYRLILF Trigger: AAACAATATCAGGCGGTATTGAAAGCCACAAGAGCATTTGGCCCCATTAATAATCAGATGGCTCCCCTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| 3UTR TCA 72 bp | GTGAGACTTGATAGGAACATGTATCTTCACACTAGTTaGAACAGGAGAAACCCTGTCTATTTAAATCCCGGG | + |
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Preference number: 3 (lower is better) Translates to: VRLDRNMYLHTS*NRRNPVYLNPG Trigger: CCCGGGATTTAAATAGACAGGGTTTCTCCTGTTTCAACTAGTGTGAAGATACATGTTCCTATCAAGTCTCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101087.10 ENSMUST00000120550.2 |
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| 3UTR TCA 72 bp | ATGGGGCCAAATGCTCTTGTGGCTTTCAATACCGCCTaGTATTGTTTCCTCTTTAAGATAAAGAGGTCAAAG | + |
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Preference number: 3 (lower is better) Translates to: MGPNALVAFNTA*YCFLFKIKRSK Trigger: CTTTGACCTCTTTATCTTAAAGAGGAAACAATATCAGGCGGTATTGAAAGCCACAAGAGCATTTGGCCCCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CCA 90 bp | AGATGTGCACAAATACACACACACGAGAGAGAGTCCCAATTCCAGTATCACAGGCGGGTCTCGGGGAGGTaGGTGGGCTGCTCACGGCTT | + |
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Preference number: 4 (lower is better) Translates to: RCAQIHTHERESQFQYHRRVSGR*VGCSRL Trigger: AAGCCGTGAGCAGCCCACCCACCTCCCCGAGACCCG...CCTGTGATACTGGAATTGGGACTCTCTCTCGTGTGTGTGTATTTGTGCACATCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CCA 90 bp | ATGAATACTAAGCATGGGGAGGCACCCATGTGTGTCTCACAACTGCTGAGTGTGGCAGGGGATTTGGGCTaGTGGCTTTGGTACCACTGG | + |
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Preference number: 4 (lower is better) Translates to: MNTKHGEAPMCVSQLLSVAGDLG*WLWYHW Trigger: CCAGTGGTACCAAAGCCACCAGCCCAAATCCCCTGC...CACACTCAGCAGTTGTGAGACACACATGGGTGCCTCCCCATGCTTAGTATTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR TCA 90 bp | AGTGAATGGATGTTTTCCACATTGTTTATTAATGTGCATGCGCACGTGTGTACACCACAGCGCAGGGACTaGCACCCCACCACTGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: SEWMFSTLFINVHAHVCTPQRRD*HPTTAA Trigger: GGCGGCAGTGGTGGGGTGTCAGTCCCTGCGCTGTGG...TGTACACACGTGCGCATGCACATTAATAAACAATGTGGAAAACATCCATTCACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR GCA 90 bp | AGATGTGCACAAATACACACACACGAGAGAGAGTCCCAATTCCAGTATCACAGGTCCTCTGTGCGACCCTaGAGCTGCATGATGTACGCC | + |
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Preference number: 4 (lower is better) Translates to: RCAQIHTHERESQFQYHRSSVRP*SCMMYA Trigger: GGCGTACATCATGCAGCTGCAGGGTCGCACAGAGGA...CCTGTGATACTGGAATTGGGACTCTCTCTCGTGTGTGTGTATTTGTGCACATCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR GCA 90 bp | CATGTGTGTCTCACAACTGCTGAGTGTGAAAGTGACCTGCTAGCAATGAAAGACTTCAGAGGAGGCTCCTaGAGTCGCTCCCTGTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: HVCLTTAECESDLLAMKDFRGGS*SRSLCS Trigger: GGAACACAGGGAGCGACTGCAGGAGCCTCCTCTGAA...GTCTTTCATTGCTAGCAGGTCACTTTCACACTCAGCAGTTGTGAGACACACATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CCA 90 bp | GTGCACAAATACACACACACGAGAGAGAGTCCCAATTCCAGTATCACAGGACAACAGAGCTGGGCGGCTTaGATTAGCACAGGCAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: VHKYTHTRESPNSSITGQQSWAA*ISTGRR Trigger: TCTCCTGCCTGTGCTAATCCAAGCCGCCCAGCTCTG...TTGTCCTGTGATACTGGAATTGGGACTCTCTCTCGTGTGTGTGTATTTGTGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR TCA 90 bp | GTGCACAAATACACACACACGAGAGAGAGTCCCAATTCCAGTATCACAGGACAAAGCGGCAACGACCGCTaGCAGGTTTGTTTTCCTCTC | + |
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Preference number: 4 (lower is better) Translates to: VHKYTHTRESPNSSITGQSGNDR*QVCFPL Trigger: GAGAGGAAAACAAACCTGTCAGCGGTCGTTGCCGCT...TTGTCCTGTGATACTGGAATTGGGACTCTCTCTCGTGTGTGTGTATTTGTGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR GCA 90 bp | CTCCCCAGAGCAGGAAAGCCTTGTGAACCCACTGGAGAAGTTTCAACAGAAATGACCATGCCTGGCTTGTaGCTCAGCTCCTCTATACTT | + |
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Preference number: 4 (lower is better) Translates to: LPRAGKPCEPTGEVSTEMTMPGL*LSSSIL Trigger: AAGTATAGAGGAGCTGAGGCACAAGCCAGGCATGGT...CATTTCTGTTGAAACTTCTCCAGTGGGTTCACAAGGCTTTCCTGCTCTGGGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR GCA 90 bp | CTTGTGAACCCACTGGAGAAGTTTCAACAGAAATGCTCAAACACAGCAGCGCTTCCAATGCAGATACCATaGCTGGCTTGTGCCTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LVNPLEKFQQKCSNTAALPMQIP*LACASA Trigger: AGCTGAGGCACAAGCCAGGCATGGTATCTGCATTGG...AAGCGCTGCTGTGTTTGAGCATTTCTGTTGAAACTTCTCCAGTGGGTTCACAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CCA 90 bp | CATGTGTGTCTCACAACTGCTGAGTGTGAAAGTGACCTGCTAGCAATGAAAGACAATGAGCAGGGGATTTaGGCTGGTGGCTTTGGTACC | + |
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Preference number: 4 (lower is better) Translates to: HVCLTTAECESDLLAMKDNEQGI*AGGFGT Trigger: GGTACCAAAGCCACCAGCCCAAATCCCCTGCTCATT...GTCTTTCATTGCTAGCAGGTCACTTTCACACTCAGCAGTTGTGAGACACACATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR GCA 90 bp | CTTGTGAACCCACTGGAGAAGTTTCAACAGAAATGCTCAAACACAGCAGCGCTTCCCTATCAGTGCACATaGAGCGTTGTAACAGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: LVNPLEKFQQKCSNTAALPYQCT*SVVTEL Trigger: GAGCTCTGTTACAACGCTGCATGTGCACTGATAGGG...AAGCGCTGCTGTGTTTGAGCATTTCTGTTGAAACTTCTCCAGTGGGTTCACAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CCA 90 bp | AGATGTGCACAAATACACACACACGAGAGAGAGTCCCAATTCCAGTATCACAGGCCTCGTGGCTGTACATaGTCACCAATGCAGATACCA | + |
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Preference number: 4 (lower is better) Translates to: RCAQIHTHERESQFQYHRPRGCT*SPMQIP Trigger: TGGTATCTGCATTGGTGACCATGTACAGCCACGAGG...CCTGTGATACTGGAATTGGGACTCTCTCTCGTGTGTGTGTATTTGTGCACATCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR TCA 90 bp | CTTGTGAACCCACTGGAGAAGTTTCAACAGAAATGCTCAAACACAGCAGCGCTTGTCTCTTTGAGAGCTTaGACTCCACTCCTTCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: LVNPLEKFQQKCSNTAALVSLRA*TPLLLH Trigger: ATGCAGAAGGAGTGGAGTTCAAGCTCTCAAAGAGAC...AAGCGCTGCTGTGTTTGAGCATTTCTGTTGAAACTTCTCCAGTGGGTTCACAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR GCA 90 bp | CTTGTGAACCCACTGGAGAAGTTTCAACAGAAATGCTCAAACACAGCAGCGCTTGATTACAGCGAGAAGTaGCACATCTGTTGGCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: LVNPLEKFQQKCSNTAALDYSEK*HICWLQ Trigger: CTGAAGCCAACAGATGTGGCACTTCTCGCTGTAATC...AAGCGCTGCTGTGTTTGAGCATTTCTGTTGAAACTTCTCCAGTGGGTTCACAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CCA 90 bp | GTGCACAAATACACACACACGAGAGAGAGTCCCAATTCCAGTATCACAGGACAAAGCCTTTGCTTTCTCTaGATCCACAAGCGAGTAAGC | + |
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Preference number: 4 (lower is better) Translates to: VHKYTHTRESPNSSITGQSLCFL*IHKRVS Trigger: GCTTACTCGCTTGTGGATCCAGAGAAAGCAAAGGCT...TTGTCCTGTGATACTGGAATTGGGACTCTCTCTCGTGTGTGTGTATTTGTGCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR GCA 90 bp | CTTGTGAACCCACTGGAGAAGTTTCAACAGAAATGCTCAAACACAGCAGCGCTTTTTTCGGCACTGTTCTaGCTGGTTTGTATACATGGC | + |
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Preference number: 4 (lower is better) Translates to: LVNPLEKFQQKCSNTAALFSALF*LVCIHG Trigger: GCCATGTATACAAACCAGGCAGAACAGTGCCGAAAA...AAGCGCTGCTGTGTTTGAGCATTTCTGTTGAAACTTCTCCAGTGGGTTCACAAG 46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CCA 90 bp | AGATGTGCACAAATACACACACACGAGAGAGAGTCCCAATTCCAGTATCACAGGAAGTGCCACATCTGTTaGCTTCAGCTTGATGATCTG | + |
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Preference number: 4 (lower is better) Translates to: RCAQIHTHERESQFQYHRKCHIC*LQLDDL Trigger: CAGATCATCAAGCTGAAGCCAACAGATGTGGCACTT...CCTGTGATACTGGAATTGGGACTCTCTCTCGTGTGTGTGTATTTGTGCACATCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CCA 90 bp | AGTGAATGGATGTTTTCCACATTGTTTATTAATGTGCATGCGCACGTGTGTACAGTTGCTGTTTCTTTTTaGTTGCTGGGGCGCCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: SEWMFSTLFINVHAHVCTVAVSF*LLGRLQ Trigger: CTGCAGGCGCCCCAGCAACCAAAAAGAAACAGCAAC...TGTACACACGTGCGCATGCACATTAATAAACAATGTGGAAAACATCCATTCACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR TCA 90 bp | CATGTGTGTCTCACAACTGCTGAGTGTGAAAGTGACCTGCTAGCAATGAAAGACAGTTGGGCTAGGGTGTaGATATCTTTTGAATTCTGT | + |
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Preference number: 4 (lower is better) Translates to: HVCLTTAECESDLLAMKDSWARV*ISFEFC Trigger: ACAGAATTCAAAAGATATTCACACCCTAGCCCAACT...GTCTTTCATTGCTAGCAGGTCACTTTCACACTCAGCAGTTGTGAGACACACATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR GCA 90 bp | CATGTGTGTCTCACAACTGCTGAGTGTGAAAGTGACCTGCTAGCAATGAAAGACGGTAATGATGTTATTTaGGATTACAGCGAGAAGTGC | + |
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Preference number: 4 (lower is better) Translates to: HVCLTTAECESDLLAMKDGNDVI*DYSEKC Trigger: GCACTTCTCGCTGTAATCGCAAATAACATCATTACC...GTCTTTCATTGCTAGCAGGTCACTTTCACACTCAGCAGTTGTGAGACACACATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CCA 90 bp | AGTGAATGGATGTTTTCCACATTGTTTATTAATGTGCATGCGCACGTGTGTACATCTGCGACTGCAAGCTaGCAGCTATTTTTCGGCACT | + |
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Preference number: 4 (lower is better) Translates to: SEWMFSTLFINVHAHVCTSATAS*QLFFGT Trigger: AGTGCCGAAAAATAGCTGCCAGCTTGCAGTCGCAGA...TGTACACACGTGCGCATGCACATTAATAAACAATGTGGAAAACATCCATTCACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR GCA 90 bp | AGATGTGCACAAATACACACACACGAGAGAGAGTCCCAATTCCAGTATCACAGGTCATCCTTGTTGATCTaGAATATCTTGTTGACAGTC | + |
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Preference number: 4 (lower is better) Translates to: RCAQIHTHERESQFQYHRSSLLI*NILLTV Trigger: GACTGTCAACAAGATATTGCAGATCAACAAGGATGA...CCTGTGATACTGGAATTGGGACTCTCTCTCGTGTGTGTGTATTTGTGCACATCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CCA 90 bp | AGTGAATGGATGTTTTCCACATTGTTTATTAATGTGCATGCGCACGTGTGTACAAGGACAGGGAGTTATTaGCTAACACTTTGGTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: SEWMFSTLFINVHAHVCTRTGSY*LTLWCE Trigger: CTCACACCAAAGTGTTAGCCAATAACTCCCTGTCCT...TGTACACACGTGCGCATGCACATTAATAAACAATGTGGAAAACATCCATTCACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR GCA 90 bp | AGTGAATGGATGTTTTCCACATTGTTTATTAATGTGCATGCGCACGTGTGTACATTTGCTAAGAGCCTTTaGTTTCTCTGGATCCACAAG | + |
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Preference number: 4 (lower is better) Translates to: SEWMFSTLFINVHAHVCTFAKSL*FLWIHK Trigger: CTTGTGGATCCAGAGAAAGCAAAGGCTCTTAGCAAA...TGTACACACGTGCGCATGCACATTAATAAACAATGTGGAAAACATCCATTCACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| 3UTR CAA 72 bp | GGCAAGAGTCAACTACTTGGAACACTGATACATTTTTaGAGGTCTTCAGTGGAACTAAATCAGTATGTTAAC | + |
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Preference number: 4 (lower is better) Translates to: GKSQLLGTLIHF*RSSVELNQYVN Trigger: GTTAACATACTGATTTAGTTCCACTGAAGACCTCAAAAAATGTATCAGTGTTCCAAGTAGTTGACTCTTGCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS GCA 90 bp | AGCTGGGCGGCTTGGATTAGCACAGGCAGGAGATACTCAGGACTCTaGGACTGCAAGCTGGCAGCTATTTTTCGGCACTGTTCTGCCTGG | + |
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Preference number: 5 (lower is better) Translates to: SWAAWISTGRRYSGL*DCKLAAIFRHCSAW Trigger: CCAGGCAGAACAGTGCCGAAAAATAGCTGCCAGCTTGCAGTCGCAGAGTCCTGAGTATCTCCTGCCTGTGCTAATCCAAGCCGCCCAGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000101087.10 ENSMUST00000120550.2 |
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| CDS-3UTR CAA 90 bp | CTTGTGAACCCACTGGAGAAGTTTCAACAGAAATGCTCAAACACAGCAGCGCTTGCTGTTTCTTTTTGGTaGCTGGGGCGCCTGCAGGTT | + |
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Preference number: 5 (lower is better) Translates to: LVNPLEKFQQKCSNTAALAVSFW*LGRLQV Trigger: AACCTGCAGGCGCCCCAGCAACCAAAAAGAAACAGC...AAGCGCTGCTGTGTTTGAGCATTTCTGTTGAAACTTCTCCAGTGGGTTCACAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS GCA 90 bp | CAATATCTTCCTCGTGGCTGTACATGGTCACCAATGCAGATACCATaGCTGGCTTGTGCCTCAGCTCCTCTATACTTCTCAGGATTAGAC | + |
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Preference number: 5 (lower is better) Translates to: QYLPRGCTWSPMQIP*LACASAPLYFSGLD Trigger: GTCTAATCCTGAGAAGTATAGAGGAGCTGAGGCACAAGCCAGGCATGGTATCTGCATTGGTGACCATGTACAGCCACGAGGAAGATATTG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101087.10 ENSMUST00000120550.2 |
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| CDS-3UTR CAA 90 bp | CTTGTGAACCCACTGGAGAAGTTTCAACAGAAATGCTCAAACACAGCAGCGCTTATCTTGTTGACAGTCTaGAGGGCACGCGTGAAGTCG | + |
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Preference number: 5 (lower is better) Translates to: LVNPLEKFQQKCSNTAALILLTV*RARVKS Trigger: CGACTTCACGCGTGCCCTCAAGACTGTCAACAAGAT...AAGCGCTGCTGTGTTTGAGCATTTCTGTTGAAACTTCTCCAGTGGGTTCACAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CAA 90 bp | GTGCACAAATACACACACACGAGAGAGAGTCCCAATTCCAGTATCACAGGACAACAGGCGGTACAGCACTaGTCCATAAAGCTCCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: VHKYTHTRESPNSSITGQQAVQH*SIKLLQ Trigger: CTGAAGGAGCTTTATGGACAAGTGCTGTACCGCCTG...TTGTCCTGTGATACTGGAATTGGGACTCTCTCTCGTGTGTGTGTATTTGTGCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CAA 90 bp | ATGAATACTAAGCATGGGGAGGCACCCATGTGTGTCTCACAACTGCTGAGTGTGCAGGTTTCTGGTGTCTaGGGGGTACAATGTTACTTG | + |
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Preference number: 5 (lower is better) Translates to: MNTKHGEAPMCVSQLLSVQVSGV*GVQCYL Trigger: CAAGTAACATTGTACCCCCAAGACACCAGAAACCTG...CACACTCAGCAGTTGTGAGACACACATGGGTGCCTCCCCATGCTTAGTATTCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CAA 90 bp | CATGTGTGTCTCACAACTGCTGAGTGTGAAAGTGACCTGCTAGCAATGAAAGACTGTTGCTGTTTCTTTTaGGTTGCTGGGGCGCCTGCA | + |
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Preference number: 5 (lower is better) Translates to: HVCLTTAECESDLLAMKDCCCFF*VAGAPA Trigger: TGCAGGCGCCCCAGCAACCAAAAAGAAACAGCAACA...GTCTTTCATTGCTAGCAGGTCACTTTCACACTCAGCAGTTGTGAGACACACATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CAA 90 bp | CATGTGTGTCTCACAACTGCTGAGTGTGAAAGTGACCTGCTAGCAATGAAAGACATCTGCAATATCTTGTaGACAGTCTTGAGGGCACGC | + |
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Preference number: 5 (lower is better) Translates to: HVCLTTAECESDLLAMKDICNIL*TVLRAR Trigger: GCGTGCCCTCAAGACTGTCAACAAGATATTGCAGAT...GTCTTTCATTGCTAGCAGGTCACTTTCACACTCAGCAGTTGTGAGACACACATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CAA 90 bp | GTGCACAAATACACACACACGAGAGAGAGTCCCAATTCCAGTATCACAGGACAATGTCTCTTTGAGAGCTaGAACTCCACTCCTTCTGCA | + |
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Preference number: 5 (lower is better) Translates to: VHKYTHTRESPNSSITGQCLFES*NSTPSA Trigger: TGCAGAAGGAGTGGAGTTCAAGCTCTCAAAGAGACA...TTGTCCTGTGATACTGGAATTGGGACTCTCTCTCGTGTGTGTGTATTTGTGCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CAA 90 bp | ATGAATACTAAGCATGGGGAGGCACCCATGTGTGTCTCACAACTGCTGAGTGTGATGGCAAGCAAAGCTTaGTTAAACTCTATGGCTTGC | + |
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Preference number: 5 (lower is better) Translates to: MNTKHGEAPMCVSQLLSVMASKA*LNSMAC Trigger: GCAAGCCATAGAGTTTAACAAAGCTTTGCTTGCCAT...CACACTCAGCAGTTGTGAGACACACATGGGTGCCTCCCCATGCTTAGTATTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CAA 90 bp | CATGTGTGTCTCACAACTGCTGAGTGTGAAAGTGACCTGCTAGCAATGAAAGACCAAATCTCCCTGTCCTaGTTCCTTTGGTTGGTTATC | + |
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Preference number: 5 (lower is better) Translates to: HVCLTTAECESDLLAMKDQISLS*FLWLVI Trigger: GATAACCAACCAAAGGAACAAGGACAGGGAGATTTG...GTCTTTCATTGCTAGCAGGTCACTTTCACACTCAGCAGTTGTGAGACACACATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CAA 90 bp | GTGCACAAATACACACACACGAGAGAGAGTCCCAATTCCAGTATCACAGGACAATTGATCTGCAATATCTaGTTGACAGTCTTGAGGGCA | + |
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Preference number: 5 (lower is better) Translates to: VHKYTHTRESPNSSITGQLICNI*LTVLRA Trigger: TGCCCTCAAGACTGTCAACAAGATATTGCAGATCAA...TTGTCCTGTGATACTGGAATTGGGACTCTCTCTCGTGTGTGTGTATTTGTGCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CAA 90 bp | AGTGAATGGATGTTTTCCACATTGTTTATTAATGTGCATGCGCACGTGTGTACAGATACCATGCCTGGCTaGTGCCTCAGCTCCTCTATA | + |
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Preference number: 5 (lower is better) Translates to: SEWMFSTLFINVHAHVCTDTMPG*CLSSSI Trigger: TATAGAGGAGCTGAGGCACAAGCCAGGCATGGTATC...TGTACACACGTGCGCATGCACATTAATAAACAATGTGGAAAACATCCATTCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CAA 90 bp | CTTGTGAACCCACTGGAGAAGTTTCAACAGAAATGCTCAAACACAGCAGCGCTTGTGACATCATCCTTGTaGATCTGCAATATCTTGTTG | + |
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Preference number: 5 (lower is better) Translates to: LVNPLEKFQQKCSNTAALVTSSL*ICNILL Trigger: CAACAAGATATTGCAGATCAACAAGGATGATGTCAC...AAGCGCTGCTGTGTTTGAGCATTTCTGTTGAAACTTCTCCAGTGGGTTCACAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS-3UTR CAA 90 bp | AGTGAATGGATGTTTTCCACATTGTTTATTAATGTGCATGCGCACGTGTGTACAAGGATTAGACACGCTTaGGAAATATTACCTTGGGAA | + |
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Preference number: 5 (lower is better) Translates to: SEWMFSTLFINVHAHVCTRIRHA*EILPWE Trigger: TTCCCAAGGTAATATTTCCAAAGCGTGTCTAATCCT...TGTACACACGTGCGCATGCACATTAATAAACAATGTGGAAAACATCCATTCACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101087.10 |
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| CDS GCA 72 bp | GCTTGGATTAGCACAGGCAGGAGATACTCAGGACTCTaGGACTGCAAGCTGGCAGCTATTTTTCGGCACTGT | + |
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Preference number: 6 (lower is better) Translates to: AWISTGRRYSGL*DCKLAAIFRHC Trigger: ACAGTGCCGAAAAATAGCTGCCAGCTTGCAGTCGCAGAGTCCTGAGTATCTCCTGCCTGTGCTAATCCAAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000101087.10 ENSMUST00000120550.2 |
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| CDS CCA 72 bp | GTGGCTGTACATGGTCACCAATGCAGATACCATGCCTaGCTTGTGCCTCAGCTCCTCTATACTTCTCAGGAT | + |
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Preference number: 6 (lower is better) Translates to: VAVHGHQCRYHA*LVPQLLYTSQD Trigger: ATCCTGAGAAGTATAGAGGAGCTGAGGCACAAGCCAGGCATGGTATCTGCATTGGTGACCATGTACAGCCAC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101087.10 ENSMUST00000120550.2 |
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| CDS GCA 72 bp | TTACAGTGCAGGGCAGTGACATCATCCTTGTTGATCTaGAATATCTTGTTGACAGTCTTGAGGGCACGCGTG | + |
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Preference number: 6 (lower is better) Translates to: LQCRAVTSSLLI*NILLTVLRARV Trigger: CACGCGTGCCCTCAAGACTGTCAACAAGATATTGCAGATCAACAAGGATGATGTCACTGCCCTGCACTGTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101087.10 ENSMUST00000120550.2 |
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| CDS CAA 72 bp | GCAGTGACATCATCCTTGTTGATCTGCAATATCTTGTaGACAGTCTTGAGGGCACGCGTGAAGTCGCTGTTC | + |
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Preference number: 6 (lower is better) Translates to: AVTSSLLICNIL*TVLRARVKSLF Trigger: GAACAGCGACTTCACGCGTGCCCTCAAGACTGTCAACAAGATATTGCAGATCAACAAGGATGATGTCACTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101087.10 ENSMUST00000120550.2 |
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| CDS CAA 90 bp | ATAAGGCAAACTACTTTACAGTGCAGGGCAGTGACATCATCCTTGTaGATCTGCAATATCTTGTTGACAGTCTTGAGGGCACGCGTGAAG | + |
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Preference number: 6 (lower is better) Translates to: IRQTTLQCRAVTSSL*ICNILLTVLRARVK Trigger: CTTCACGCGTGCCCTCAAGACTGTCAACAAGATATTGCAGATCAACAAGGATGATGTCACTGCCCTGCACTGTAAAGTAGTTTGCCTTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101087.10 ENSMUST00000120550.2 |
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| CDS CAA 72 bp | CAAACTACTTTACAGTGCAGGGCAGTGACATCATCCTaGTTGATCTGCAATATCTTGTTGACAGTCTTGAGG | + |
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Preference number: 6 (lower is better) Translates to: QTTLQCRAVTSS*LICNILLTVLR Trigger: CCTCAAGACTGTCAACAAGATATTGCAGATCAACAAGGATGATGTCACTGCCCTGCACTGTAAAGTAGTTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101087.10 ENSMUST00000120550.2 |
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