RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SRP68 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020780

Ensembl transcript IDs: ENSMUST00000021133.16, ENSMUST00000106425.4

Found 200 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAAACACACAAGATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTaGCCCAGCCAACGCAGAACTGGATTTAATGCCATGGAACTTGTC +
Preference number: 1 (lower is better)
Translates to: QTHKMNGRRAEGAEL*PSQRRTGFNAMELV
Trigger: GACAAGTTCCATGGCATTAAATCCAGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCATCTTGTGTGTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
3UTR CCA 90 bp GTGCTGAGCTCTGCCCCAGCCAACGCAGAACTGGATTTAATGCCATaGAACTTGTCGGGTCTGTCTCAATACAGAGTAAGCCAGGACCTC +
Preference number: 1 (lower is better)
Translates to: VLSSAPANAELDLMP*NLSGLSQYRVSQDL
Trigger: GAGGTCCTGGCTTACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCTGCGTTGGCTGGGGCAGAGCTCAGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
3UTR CCA 90 bp GTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTaGACTCTCACAGCGAGGAGGGGTCATTTCAAATCCATGGGACTG +
Preference number: 1 (lower is better)
Translates to: VTLLAFQSLTNFRRL*TLTARRGHFKSMGL
Trigger: CAGTCCCATGGATTTGAAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
3UTR CAA 90 bp AGCTCTGCCCCAGCCAACGCAGAACTGGATTTAATGCCATGGAACTaGTCGGGTCTGTCTCAATACAGAGTAAGCCAGGACCTCCCTGCC +
Preference number: 2 (lower is better)
Translates to: SSAPANAELDLMPWN*SGLSQYRVSQDLPA
Trigger: GGCAGGGAGGTCCTGGCTTACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCTGCGTTGGCTGGGGCAGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
3UTR-3UTR TCA 90 bp GACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTCAAATCGGGACTGAGGACACATaGCAAACACTCCCAAGCCCC +
Preference number: 2 (lower is better)
Translates to: DKLQETLDSHSEEGSFQIGTEDT*QTLPSP
Trigger: GGGGCTTGGGAGTGTTTGTCATGTGTCCTCAGTCCC...GATTTGAAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
3UTR-3UTR TCA 90 bp ACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGGGGACTGAGGACACATaGCAAACACTCCCAAGCCCC +
Preference number: 2 (lower is better)
Translates to: TTTLGDTARISVIDKLQEGTEDT*QTLPSP
Trigger: GGGGCTTGGGAGTGTTTGTCATGTGTCCTCAGTCCC...CTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
3UTR-3UTR CCA 90 bp GCGAGGAGGGGTCATTTCAAATCCATGGGACTGAGGACACATGACAAACACTCCAAAAGTGATCAGCCATaGCTTACAAGGGCAGGACAG +
Preference number: 2 (lower is better)
Translates to: ARRGHFKSMGLRTHDKHSKSDQP*LTRAGQ
Trigger: CTGTCCTGCCCTTGTAAGCCATGGCTGATCACTTTT...GGAGTGTTTGTCATGTGTCCTCAGTCCCATGGATTTGAAATGACCCCTCCTCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
3UTR-3UTR CCA 90 bp ACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGAAAAGTGATCAGCCATaGCTTACAAGGGCAGGACAG +
Preference number: 2 (lower is better)
Translates to: TLGDTARISVIDKLQETLKSDQP*LTRAGQ
Trigger: CTGTCCTGCCCTTGTAAGCCATGGCTGATCACTTTT...CAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
3UTR-3UTR TCA 90 bp ACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGTCAAATCCATGGGACTaGGGACACATGACAAACACT +
Preference number: 2 (lower is better)
Translates to: TTTLGDTARISVIDKLQESNPWD*GHMTNT
Trigger: AGTGTTTGTCATGTGTCCTCAGTCCCATGGATTTGA...CTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
3UTR-3UTR CCA 90 bp GGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGGACTCTCTGGATTTAATGCCATaGAACTTGTCGGGTCTGTCT +
Preference number: 2 (lower is better)
Translates to: GDTARISVIDKLQETLDSLDLMP*NLSGLS
Trigger: AGACAGACCCGACAAGTTCCATGGCATTAAATCCAG...AGAGTCCAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
3UTR-3UTR TCA 90 bp ACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGCATATTGACCAAAAGTaGTCAGCCATGGCTTACAAG +
Preference number: 2 (lower is better)
Translates to: TTTLGDTARISVIDKLQEHIDQK*SAMAYK
Trigger: CTTGTAAGCCATGGCTGATCACTTTTGGTCAATATG...CTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
3UTR-3UTR TCA 90 bp GACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTCAAATCCGAATTTTGACATATTaGCCAAAAGTGATCAGCCAT +
Preference number: 2 (lower is better)
Translates to: DKLQETLDSHSEEGSFQIRILTY*PKVISH
Trigger: ATGGCTGATCACTTTTGGTCAATATGTCAAAATTCG...GATTTGAAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
3UTR CCA 72 bp TCTGCCCCAGCCAACGCAGAACTGGATTTAATGCCATaGAACTTGTCGGGTCTGTCTCAATACAGAGTAAGC +
Preference number: 3 (lower is better)
Translates to: SAPANAELDLMP*NLSGLSQYRVS
Trigger: GCTTACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCTGCGTTGGCTGGGGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
3UTR CCA 72 bp CTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTaGACTCTCACAGCGAGGAGGGGTCATTTCAAATCC +
Preference number: 3 (lower is better)
Translates to: LAFQSLTNFRRL*TLTARRGHFKS
Trigger: GGATTTGAAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
3UTR-3UTR CAA 90 bp GTCATTGACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTCCGAATTTTGACATATaGACCAAAAGTGATCAGCCA +
Preference number: 3 (lower is better)
Translates to: VIDKLQETLDSHSEEGSFPNFDI*TKSDQP
Trigger: TGGCTGATCACTTTTGGTCAATATGTCAAAATTCGG...AAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTCAATGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
3UTR-3UTR CAA 90 bp GGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGGACTCTCCGAATTTTGACATATaGACCAAAAGTGATCAGCCA +
Preference number: 3 (lower is better)
Translates to: GDTARISVIDKLQETLDSPNFDI*TKSDQP
Trigger: TGGCTGATCACTTTTGGTCAATATGTCAAAATTCGG...AGAGTCCAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CCA 90 bp ATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTGCCCCAGCCAACGCAGAACTGGGCTGGAACCCTGGTaGGAAGTGCACGAGGTTGGC +
Preference number: 4 (lower is better)
Translates to: MNGRRAEGAELCPSQRRTGLEPW*EVHEVG
Trigger: GCCAACCTCGTGCACTTCCCACCAGGGTTCCAGCCC...AGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp ATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTGCCCCAGCCAACGCAGAACTTGCATCCAGGATGGCTaGGGCCTGCAGCGAGCACTT +
Preference number: 4 (lower is better)
Translates to: MNGRRAEGAELCPSQRRTCIQDG*GLQRAL
Trigger: AAGTGCTCGCTGCAGGCCGCAGCCATCCTGGATGCA...AGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp ATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTGCCCCAGCCAACGCAGAACTGGAAGGCCACGTGGTTaGGGGCCAGGTCAAAGAACA +
Preference number: 4 (lower is better)
Translates to: MNGRRAEGAELCPSQRRTGRPRG*GPGQRT
Trigger: TGTTCTTTGACCTGGCCCTCAACCACGTGGCCTTCC...AGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp ATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTGCCCCAGCCAACGCAGAACTTGGCATCCACCCGGTTaGTCTCACACAAGCGCTCCA +
Preference number: 4 (lower is better)
Translates to: MNGRRAEGAELCPSQRRTWHPPG*SHTSAP
Trigger: TGGAGCGCTTGTGTGAGAGCAACCGGGTGGATGCCA...AGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp ATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTGCCCCAGCCAACGCAGAACTCAAGGAGCCCCTCTGTaGCCCCAGACCTTAGTCTCA +
Preference number: 4 (lower is better)
Translates to: MNGRRAEGAELCPSQRRTQGAPL*PQTLVS
Trigger: TGAGACTAAGGTCTGGGGGCACAGAGGGGCTCCTTG...AGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CCA 90 bp ATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTGCCCCAGCCAACGCAGAACTTTGCAAGGGATGGGCTaGAACCCTGGTGGGAAGTGC +
Preference number: 4 (lower is better)
Translates to: MNGRRAEGAELCPSQRRTLQGMG*NPGGKC
Trigger: GCACTTCCCACCAGGGTTCCAGCCCATCCCTTGCAA...AGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp ATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTGCCCCAGCCAACGCAGAACTTGTTGGCTTCCTGTTTaGGCTGCATGGCGTAGCTCC +
Preference number: 4 (lower is better)
Translates to: MNGRRAEGAELCPSQRRTCWLPV*AAWRSS
Trigger: GGAGCTACGCCATGCAGCTCAAACAGGAAGCCAACA...AGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp GGTCTGTCTCAATACAGAGTAAGCCAGGACCTCCCTGCCCCGAGGAAGAGCCTGCAAGGAGCCCCTCTGTaGCCCCAGACCTTAGTCTCA +
Preference number: 4 (lower is better)
Translates to: GLSQYRVSQDLPAPRKSLQGAPL*PQTLVS
Trigger: TGAGACTAAGGTCTGGGGGCACAGAGGGGCTCCTTG...CAGGCTCTTCCTCGGGGCAGGGAGGTCCTGGCTTACTCTGTATTGAGACAGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp ATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTGCCCCAGCCAACGCAGAACTGAGCTCATTGATAGCTaGCTGGTCCCCAATGTTGTA +
Preference number: 4 (lower is better)
Translates to: MNGRRAEGAELCPSQRRTELIDS*LVPNVV
Trigger: TACAACATTGGGGACCAGTCAGCTATCAATGAGCTC...AGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp GGTCTGTCTCAATACAGAGTAAGCCAGGACCTCCCTGCCCCGAGGAAGAGCCTGGCTCCAGGCTCTTTCTaGATCCATCAGCACCAGCAG +
Preference number: 4 (lower is better)
Translates to: GLSQYRVSQDLPAPRKSLAPGSF*IHQHQQ
Trigger: CTGCTGGTGCTGATGGATGCAGAAAGAGCCTGGAGC...CAGGCTCTTCCTCGGGGCAGGGAGGTCCTGGCTTACTCTGTATTGAGACAGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GGTCTGTCTCAATACAGAGTAAGCCAGGACCTCCCTGCCCCGAGGAAGAGCCTGTGCCTTCGATCCGGCTaGAGGGCGTTCGTTTTCTTT +
Preference number: 4 (lower is better)
Translates to: GLSQYRVSQDLPAPRKSLCLRSG*RAFVFF
Trigger: AAAGAAAACGAACGCCCTTCAGCCGGATCGAAGGCA...CAGGCTCTTCCTCGGGGCAGGGAGGTCCTGGCTTACTCTGTATTGAGACAGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GTCATTGACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTAGCCGGATGAGGTCCTaGGGCCTGGGAGAGCGCTTG +
Preference number: 4 (lower is better)
Translates to: VIDKLQETLDSHSEEGSFSRMRS*GLGERL
Trigger: CAAGCGCTCTCCCAGGCCTCAGGACCTCATCCGGCT...AAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTCAATGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp ATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTGCCCCAGCCAACGCAGAACTGTCTTTGACTTGGGATaGGGTGTCTGTTTGATGAGA +
Preference number: 4 (lower is better)
Translates to: MNGRRAEGAELCPSQRRTVFDLG*GVCLMR
Trigger: TCTCATCAAACAGACACCTCATCCCAAGTCAAAGAC...AGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GTAAGGCTGACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAAAGCCGGATGAGGTCCTaGGGCCTGGGAGAGCGCTTG +
Preference number: 4 (lower is better)
Translates to: VRLTTTLGDTARISVIDKSRMRS*GLGERL
Trigger: CAAGCGCTCTCCCAGGCCTCAGGACCTCATCCGGCT...TTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGTCAGCCTTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp GGTCTGTCTCAATACAGAGTAAGCCAGGACCTCCCTGCCCCGAGGAAGAGCCTGCAAAGAACAAAGGCTTaGAAGGGATGGGCTGGAACC +
Preference number: 4 (lower is better)
Translates to: GLSQYRVSQDLPAPRKSLQRTKA*KGWAGT
Trigger: GGTTCCAGCCCATCCCTTGCAAGCCTTTGTTCTTTG...CAGGCTCTTCCTCGGGGCAGGGAGGTCCTGGCTTACTCTGTATTGAGACAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CCA 90 bp GACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTCAAATCCGTTTGCATCCAGGATaGCTGCGGCCTGCAGCGAGC +
Preference number: 4 (lower is better)
Translates to: DKLQETLDSHSEEGSFQIRLHPG*LRPAAS
Trigger: GCTCGCTGCAGGCCGCAGCCATCCTGGATGCAAACG...GATTTGAAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GGTCTGTCTCAATACAGAGTAAGCCAGGACCTCCCTGCCCCGAGGAAGAGCCTGTTGCTGTTGACAGCTTaGTGTAGGTCAGGTAGCTGT +
Preference number: 4 (lower is better)
Translates to: GLSQYRVSQDLPAPRKSLLLLTA*CRSGSC
Trigger: ACAGCTACCTGACCTACATCAAGCTGTCAACAGCAA...CAGGCTCTTCCTCGGGGCAGGGAGGTCCTGGCTTACTCTGTATTGAGACAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GTCATTGACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTTGTCATAGAGCCGGATaGGGTCCTGAGGCCTGGGAG +
Preference number: 4 (lower is better)
Translates to: VIDKLQETLDSHSEEGSFCHRAG*GPEAWE
Trigger: CTCCCAGGCCTCAGGACCTCATCCGGCTCTATGACA...AAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTCAATGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTCAAATCTGTCATAGAGCCGGATaGGGTCCTGAGGCCTGGGAG +
Preference number: 4 (lower is better)
Translates to: DKLQETLDSHSEEGSFQICHRAG*GPEAWE
Trigger: CTCCCAGGCCTCAGGACCTCATCCGGCTCTATGACA...GATTTGAAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp GTCATTGACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTAGGATGGCTGCGGCCTaGAGCGAGCACTTCTCTGAC +
Preference number: 4 (lower is better)
Translates to: VIDKLQETLDSHSEEGSFRMAAA*SEHFSD
Trigger: GTCAGAGAAGTGCTCGCTGCAGGCCGCAGCCATCCT...AAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTCAATGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CCA 90 bp GGTCTGTCTCAATACAGAGTAAGCCAGGACCTCCCTGCCCCGAGGAAGAGCCTGATCTCTTCTACACGCTaGTTGTACAACACAGCCTGC +
Preference number: 4 (lower is better)
Translates to: GLSQYRVSQDLPAPRKSLISSTR*LYNTAC
Trigger: GCAGGCTGTGTTGTACAACCAGCGTGTAGAAGAGAT...CAGGCTCTTCCTCGGGGCAGGGAGGTCCTGGCTTACTCTGTATTGAGACAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CCA 90 bp GTAAGGCTGACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAAGGGCTGGAACCCTGGTaGGAAGTGCACGAGGTTGGC +
Preference number: 4 (lower is better)
Translates to: VRLTTTLGDTARISVIDKGLEPW*EVHEVG
Trigger: GCCAACCTCGTGCACTTCCCACCAGGGTTCCAGCCC...TTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGTCAGCCTTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp ACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGCGCTGGAAGTCTCCGTaGCGTAAGCCATGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: TTTLGDTARISVIDKLQERWKSP*RKPCCC
Trigger: GCAGCAGCATGGCTTACGGCACGGAGACTTCCAGCG...CTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp GTCATTGACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTTGGCATCCACCCGGTTaGTCTCACACAAGCGCTCCA +
Preference number: 4 (lower is better)
Translates to: VIDKLQETLDSHSEEGSFWHPPG*SHTSAP
Trigger: TGGAGCGCTTGTGTGAGAGCAACCGGGTGGATGCCA...AAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTCAATGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp GTAAGGCTGACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAATGCATCCAGGATGGCTaGGGCCTGCAGCGAGCACTT +
Preference number: 4 (lower is better)
Translates to: VRLTTTLGDTARISVIDKCIQDG*GLQRAL
Trigger: AAGTGCTCGCTGCAGGCCGCAGCCATCCTGGATGCA...TTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGTCAGCCTTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CCA 90 bp GCGAGGAGGGGTCATTTCAAATCCATGGGACTGAGGACACATGACAAACACTCCCCTTCAGGCTGTTCTTaGAGGCTCCTCCGTGAGAAC +
Preference number: 4 (lower is better)
Translates to: ARRGHFKSMGLRTHDKHSPSGCS*RLLREN
Trigger: GTTCTCACGGAGGAGCCTCCAAGAACAGCCTGAAGG...GGAGTGTTTGTCATGTGTCCTCAGTCCCATGGATTTGAAATGACCCCTCCTCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CCA 90 bp GACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTCAAATCTTGCAAGGGATGGGCTaGAACCCTGGTGGGAAGTGC +
Preference number: 4 (lower is better)
Translates to: DKLQETLDSHSEEGSFQILQGMG*NPGGKC
Trigger: GCACTTCCCACCAGGGTTCCAGCCCATCCCTTGCAA...GATTTGAAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTCAAATCCAGCGAGCACTTCTCTaGCCGCACTTGAGTGATGAG +
Preference number: 4 (lower is better)
Translates to: DKLQETLDSHSEEGSFQIQRALL*PHLSDE
Trigger: CTCATCACTCAAGTGCGGTCAGAGAAGTGCTCGCTG...GATTTGAAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GTAAGGCTGACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAAGGAAGGCCACGTGGTTaGGGGCCAGGTCAAAGAACA +
Preference number: 4 (lower is better)
Translates to: VRLTTTLGDTARISVIDKGRPRG*GPGQRT
Trigger: TGTTCTTTGACCTGGCCCTCAACCACGTGGCCTTCC...TTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGTCAGCCTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp GTCATTGACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTGCGCTCCAGTTCCTCTaGATGCTTCACGGCTTTTCG +
Preference number: 4 (lower is better)
Translates to: VIDKLQETLDSHSEEGSFALQFL*MLHGFS
Trigger: CGAAAAGCCGTGAAGCATGCAGAGGAACTGGAGCGC...AAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTCAATGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CCA 90 bp GGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGGACTCTCCTGAGCCTCTAGCTTaGTCTTGGCATCCACCCGGT +
Preference number: 4 (lower is better)
Translates to: GDTARISVIDKLQETLDSPEPLA*SWHPPG
Trigger: ACCGGGTGGATGCCAAGACCAAGCTAGAGGCTCAGG...AGAGTCCAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CCA 90 bp GCAGAACTGGATTTAATGCCATGGAACTTGTCGGGTCTGTCTCAATACAGAGTACGTTTGCATCCAGGATaGCTGCGGCCTGCAGCGAGC +
Preference number: 4 (lower is better)
Translates to: AELDLMPWNLSGLSQYRVRLHPG*LRPAAS
Trigger: GCTCGCTGCAGGCCGCAGCCATCCTGGATGCAAACG...TACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CCA 90 bp ACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGGATGGGCTGGAACCCTaGTGGGAAGTGCACGAGGTT +
Preference number: 4 (lower is better)
Translates to: TTTLGDTARISVIDKLQEDGLEP*WEVHEV
Trigger: AACCTCGTGCACTTCCCACCAGGGTTCCAGCCCATC...CTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CCA 90 bp GGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGGACTCTGATGGGCTGGAACCCTaGTGGGAAGTGCACGAGGTT +
Preference number: 4 (lower is better)
Translates to: GDTARISVIDKLQETLDSDGLEP*WEVHEV
Trigger: AACCTCGTGCACTTCCCACCAGGGTTCCAGCCCATC...AGAGTCCAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CCA 90 bp GTCATTGACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTTTTGTCCTCAAGGGGTaGGAAGGCCACGTGGTTGAG +
Preference number: 4 (lower is better)
Translates to: VIDKLQETLDSHSEEGSFFVLKG*EGHVVE
Trigger: CTCAACCACGTGGCCTTCCCACCCCTTGAGGACAAA...AAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTCAATGAC
52% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GTCATTGACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTTGCCTTCGATCCGGCTaGAGGGCGTTCGTTTTCTTT +
Preference number: 4 (lower is better)
Translates to: VIDKLQETLDSHSEEGSFCLRSG*RAFVFF
Trigger: AAAGAAAACGAACGCCCTTCAGCCGGATCGAAGGCA...AAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTCAATGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGGACTCTTGTTGGCTTCCTGTTTaGGCTGCATGGCGTAGCTCC +
Preference number: 4 (lower is better)
Translates to: GDTARISVIDKLQETLDSCWLPV*AAWRSS
Trigger: GGAGCTACGCCATGCAGCTCAAACAGGAAGCCAACA...AGAGTCCAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGGACTCTCAGCCTGCTCCTCTGTaGATGCACTGGCTAGCTTCT +
Preference number: 4 (lower is better)
Translates to: GDTARISVIDKLQETLDSQPAPL*MHWLAS
Trigger: AGAAGCTAGCCAGTGCATTCACAGAGGAGCAGGCTG...AGAGTCCAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GTCATTGACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTTGCTTGGCTCGAGTCTaGGTGATCAAGGCCTCAAGT +
Preference number: 4 (lower is better)
Translates to: VIDKLQETLDSHSEEGSFCLARV*VIKASS
Trigger: ACTTGAGGCCTTGATCACTCAGACTCGAGCCAAGCA...AAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTCAATGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTCAAATCTGCTTGGCTCGAGTCTaGGTGATCAAGGCCTCAAGT +
Preference number: 4 (lower is better)
Translates to: DKLQETLDSHSEEGSFQICLARV*VIKASS
Trigger: ACTTGAGGCCTTGATCACTCAGACTCGAGCCAAGCA...GATTTGAAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp ACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGCAGCGAGCACTTCTCTaGCCGCACTTGAGTGATGAG +
Preference number: 4 (lower is better)
Translates to: TLGDTARISVIDKLQETLQRALL*PHLSDE
Trigger: CTCATCACTCAAGTGCGGTCAGAGAAGTGCTCGCTG...CAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp GACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTCAAATCTGCAGCAGAGCCCTGTaGAAGCCTTTAGCCATGTTC +
Preference number: 4 (lower is better)
Translates to: DKLQETLDSHSEEGSFQICSRAL*KPLAMF
Trigger: GAACATGGCTAAAGGCTTGCACAGGGCTCTGCTGCA...GATTTGAAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp GCGAGGAGGGGTCATTTCAAATCCATGGGACTGAGGACACATGACAAACACTCCCAAAGAACAAAGGCTTaGAAGGGATGGGCTGGAACC +
Preference number: 4 (lower is better)
Translates to: ARRGHFKSMGLRTHDKHSQRTKA*KGWAGT
Trigger: GGTTCCAGCCCATCCCTTGCAAGCCTTTGTTCTTTG...GGAGTGTTTGTCATGTGTCCTCAGTCCCATGGATTTGAAATGACCCCTCCTCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GCGAGGAGGGGTCATTTCAAATCCATGGGACTGAGGACACATGACAAACACTCCTGGCTCGAGTCTGAGTaGTCAAGGCCTCAAGTTTTT +
Preference number: 4 (lower is better)
Translates to: ARRGHFKSMGLRTHDKHSWLESE*SRPQVF
Trigger: AAAAACTTGAGGCCTTGATCACTCAGACTCGAGCCA...GGAGTGTTTGTCATGTGTCCTCAGTCCCATGGATTTGAAATGACCCCTCCTCGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTCAAATCGAGGCGTATTGTCTTTaGCTTGGGATGAGGTGTCTG +
Preference number: 4 (lower is better)
Translates to: DKLQETLDSHSEEGSFQIEAYCL*LGMRCL
Trigger: CAGACACCTCATCCCAAGTCAAAGACAATACGCCTC...GATTTGAAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp AGAACTGGATTTAATGCCATGGAACTTGTCGGGTCTGTCTCAATACAGAGTAAGAGGATGGCTGCGGCCTaGAGCGAGCACTTCTCTGAC +
Preference number: 4 (lower is better)
Translates to: RTGFNAMELVGSVSIQSKRMAAA*SEHFSD
Trigger: GTCAGAGAAGTGCTCGCTGCAGGCCGCAGCCATCCT...CTTACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp ACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGTTGATGAGAGTCGTTTaGATCCAGGATGGCTGCGGC +
Preference number: 4 (lower is better)
Translates to: TLGDTARISVIDKLQETLLMRVV*IQDGCG
Trigger: GCCGCAGCCATCCTGGATGCAAACGACTCTCATCAA...CAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp ACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGTTGATGAGAGTCGTTTaGATCCAGGATGGCTGCGGC +
Preference number: 4 (lower is better)
Translates to: TTTLGDTARISVIDKLQELMRVV*IQDGCG
Trigger: GCCGCAGCCATCCTGGATGCAAACGACTCTCATCAA...CTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp GTAAGGCTGACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAAAACCCTGGTGGGAAGTaGACGAGGTTGGCTTGTTTG +
Preference number: 4 (lower is better)
Translates to: VRLTTTLGDTARISVIDKNPGGK*TRLACL
Trigger: CAAACAAGCCAACCTCGTGCACTTCCCACCAGGGTT...TTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGTCAGCCTTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp GGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGGACTCTAACCCTGGTGGGAAGTaGACGAGGTTGGCTTGTTTG +
Preference number: 4 (lower is better)
Translates to: GDTARISVIDKLQETLDSNPGGK*TRLACL
Trigger: CAAACAAGCCAACCTCGTGCACTTCCCACCAGGGTT...AGAGTCCAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GCGAGGAGGGGTCATTTCAAATCCATGGGACTGAGGACACATGACAAACACTCCGTCTTTGACTTGGGATaGGGTGTCTGTTTGATGAGA +
Preference number: 4 (lower is better)
Translates to: ARRGHFKSMGLRTHDKHSVFDLG*GVCLMR
Trigger: TCTCATCAAACAGACACCTCATCCCAAGTCAAAGAC...GGAGTGTTTGTCATGTGTCCTCAGTCCCATGGATTTGAAATGACCCCTCCTCGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GTAAGGCTGACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAAGAGGCGTATTGTCTTTaGCTTGGGATGAGGTGTCTG +
Preference number: 4 (lower is better)
Translates to: VRLTTTLGDTARISVIDKEAYCL*LGMRCL
Trigger: CAGACACCTCATCCCAAGTCAAAGACAATACGCCTC...TTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGTCAGCCTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp ACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGAAGCCATGCTGCTGCTaGGACTCCTTAATGATCTGC +
Preference number: 4 (lower is better)
Translates to: TTTLGDTARISVIDKLQEKPCCC*DSLMIC
Trigger: GCAGATCATTAAGGAGTCGCAGCAGCAGCATGGCTT...CTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp GGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGGACTCTAAGCCATGCTGCTGCTaGGACTCCTTAATGATCTGC +
Preference number: 4 (lower is better)
Translates to: GDTARISVIDKLQETLDSKPCCC*DSLMIC
Trigger: GCAGATCATTAAGGAGTCGCAGCAGCAGCATGGCTT...AGAGTCCAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp ACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGCGTAAGCCATGCTGCTaGTGCGACTCCTTAATGATC +
Preference number: 4 (lower is better)
Translates to: TTTLGDTARISVIDKLQERKPCC*CDSLMI
Trigger: GATCATTAAGGAGTCGCAGCAGCAGCATGGCTTACG...CTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp ACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGCGTAAGCCATGCTGCTaGTGCGACTCCTTAATGATC +
Preference number: 4 (lower is better)
Translates to: TLGDTARISVIDKLQETLRKPCC*CDSLMI
Trigger: GATCATTAAGGAGTCGCAGCAGCAGCATGGCTTACG...CAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp GCAGAACTGGATTTAATGCCATGGAACTTGTCGGGTCTGTCTCAATACAGAGTAGCTCCAGGCTCTTTCTaGATCCATCAGCACCAGCAG +
Preference number: 4 (lower is better)
Translates to: AELDLMPWNLSGLSQYRVAPGSF*IHQHQQ
Trigger: CTGCTGGTGCTGATGGATGCAGAAAGAGCCTGGAGC...TACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp ACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGTCCAGTTCCTCTGCATaGTTCACGGCTTTTCGAAGG +
Preference number: 4 (lower is better)
Translates to: TTTLGDTARISVIDKLQESSSSA*FTAFRR
Trigger: CCTTCGAAAAGCCGTGAAGCATGCAGAGGAACTGGA...CTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp GGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGGACTCTGTCCCCAATGTTGTATaGACAGTAGCGGATGTTGGG +
Preference number: 4 (lower is better)
Translates to: GDTARISVIDKLQETLDSVPNVV*TVADVG
Trigger: CCCAACATCCGCTACTGTGCATACAACATTGGGGAC...AGAGTCCAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CCA 90 bp GGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGGACTCTCACAGTAGCGGATGTTaGGCGAGATCTCTTCTACAC +
Preference number: 4 (lower is better)
Translates to: GDTARISVIDKLQETLDSHSSGC*ARSLLH
Trigger: GTGTAGAAGAGATCTCGCCCAACATCCGCTACTGTG...AGAGTCCAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CCA 90 bp GCAGAACTGGATTTAATGCCATGGAACTTGTCGGGTCTGTCTCAATACAGAGTATTTGTCCTCAAGGGGTaGGAAGGCCACGTGGTTGAG +
Preference number: 4 (lower is better)
Translates to: AELDLMPWNLSGLSQYRVFVLKG*EGHVVE
Trigger: CTCAACCACGTGGCCTTCCCACCCCTTGAGGACAAA...TACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp AGAACTGGATTTAATGCCATGGAACTTGTCGGGTCTGTCTCAATACAGAGTAAGCAGCCTGCTCCTCTGTaGATGCACTGGCTAGCTTCT +
Preference number: 4 (lower is better)
Translates to: RTGFNAMELVGSVSIQSKQPAPL*MHWLAS
Trigger: AGAAGCTAGCCAGTGCATTCACAGAGGAGCAGGCTG...CTTACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GTAAGGCTGACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAATTGCTGTTGACAGCTTaGTGTAGGTCAGGTAGCTGT +
Preference number: 4 (lower is better)
Translates to: VRLTTTLGDTARISVIDKLLLTA*CRSGSC
Trigger: ACAGCTACCTGACCTACATCAAGCTGTCAACAGCAA...TTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGTCAGCCTTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp ACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGTTGTACAACACAGCCTaGTCCTCTGTGAATGCACTG +
Preference number: 4 (lower is better)
Translates to: TTTLGDTARISVIDKLQELYNTA*SSVNAL
Trigger: CAGTGCATTCACAGAGGAGCAGGCTGTGTTGTACAA...CTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp ACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGTTGTACAACACAGCCTaGTCCTCTGTGAATGCACTG +
Preference number: 4 (lower is better)
Translates to: TLGDTARISVIDKLQETLLYNTA*SSVNAL
Trigger: CAGTGCATTCACAGAGGAGCAGGCTGTGTTGTACAA...CAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CCA 90 bp ACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGATCTCTTCTACACGCTaGTTGTACAACACAGCCTGC +
Preference number: 4 (lower is better)
Translates to: TLGDTARISVIDKLQETLISSTR*LYNTAC
Trigger: GCAGGCTGTGTTGTACAACCAGCGTGTAGAAGAGAT...CAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CCA 90 bp AGAACTGGATTTAATGCCATGGAACTTGTCGGGTCTGTCTCAATACAGAGTAAGCCTTCAGGCTGTTCTTaGAGGCTCCTCCGTGAGAAC +
Preference number: 4 (lower is better)
Translates to: RTGFNAMELVGSVSIQSKPSGCS*RLLREN
Trigger: GTTCTCACGGAGGAGCCTCCAAGAACAGCCTGAAGG...CTTACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp GCAGAACTGGATTTAATGCCATGGAACTTGTCGGGTCTGTCTCAATACAGAGTAGTCCCCAATGTTGTATaGACAGTAGCGGATGTTGGG +
Preference number: 4 (lower is better)
Translates to: AELDLMPWNLSGLSQYRVVPNVV*TVADVG
Trigger: CCCAACATCCGCTACTGTGCATACAACATTGGGGAC...TACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp AGAACTGGATTTAATGCCATGGAACTTGTCGGGTCTGTCTCAATACAGAGTAAGTGCAGCAGAGCCCTGTaGAAGCCTTTAGCCATGTTC +
Preference number: 4 (lower is better)
Translates to: RTGFNAMELVGSVSIQSKCSRAL*KPLAMF
Trigger: GAACATGGCTAAAGGCTTGCACAGGGCTCTGCTGCA...CTTACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GCAGAACTGGATTTAATGCCATGGAACTTGTCGGGTCTGTCTCAATACAGAGTAGAGCTCATTGATAGCTaGCTGGTCCCCAATGTTGTA +
Preference number: 4 (lower is better)
Translates to: AELDLMPWNLSGLSQYRVELIDS*LVPNVV
Trigger: TACAACATTGGGGACCAGTCAGCTATCAATGAGCTC...TACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GCAGAACTGGATTTAATGCCATGGAACTTGTCGGGTCTGTCTCAATACAGAGTATGGCTCGAGTCTGAGTaGTCAAGGCCTCAAGTTTTT +
Preference number: 4 (lower is better)
Translates to: AELDLMPWNLSGLSQYRVWLESE*SRPQVF
Trigger: AAAAACTTGAGGCCTTGATCACTCAGACTCGAGCCA...TACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTCAAATCCTTCATTTGCATATTTaGGAACTCTGTCGTACAGGA +
Preference number: 4 (lower is better)
Translates to: DKLQETLDSHSEEGSFQILHLHI*ELCRTG
Trigger: TCCTGTACGACAGAGTTCTCAAATATGCAAATGAAG...GATTTGAAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp GTCATTGACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTCTTCATTTGCATATTTaGGAACTCTGTCGTACAGGA +
Preference number: 4 (lower is better)
Translates to: VIDKLQETLDSHSEEGSFLHLHI*ELCRTG
Trigger: TCCTGTACGACAGAGTTCTCAAATATGCAAATGAAG...AAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTCAATGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CCA 90 bp AGAACTGGATTTAATGCCATGGAACTTGTCGGGTCTGTCTCAATACAGAGTAAGCACAGTAGCGGATGTTaGGCGAGATCTCTTCTACAC +
Preference number: 4 (lower is better)
Translates to: RTGFNAMELVGSVSIQSKHSSGC*ARSLLH
Trigger: GTGTAGAAGAGATCTCGCCCAACATCCGCTACTGTG...CTTACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR TCA 90 bp AGAACTGGATTTAATGCCATGGAACTTGTCGGGTCTGTCTCAATACAGAGTAAGTTACTTTCTTCCCCGTaGATTTGTGTCTGTTCCCCA +
Preference number: 4 (lower is better)
Translates to: RTGFNAMELVGSVSIQSKLLSSP*ICVCSP
Trigger: TGGGGAACAGACACAAATTCACGGGGAAGAAAGTAA...CTTACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021133.16
CDS-3UTR GCA 90 bp ACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGAGAACTCACTTCATTTaGATATTTGAGAACTCTGTC +
Preference number: 4 (lower is better)
Translates to: TTTLGDTARISVIDKLQERTHFI*IFENSV
Trigger: GACAGAGTTCTCAAATATGCAAATGAAGTGAGTTCT...CTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR GCA 90 bp AGAACTGGATTTAATGCCATGGAACTTGTCGGGTCTGTCTCAATACAGAGTAAGAGAACTCACTTCATTTaGATATTTGAGAACTCTGTC +
Preference number: 4 (lower is better)
Translates to: RTGFNAMELVGSVSIQSKRTHFI*IFENSV
Trigger: GACAGAGTTCTCAAATATGCAAATGAAGTGAGTTCT...CTTACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS GCA 90 bp CGGCTGAAGGGCGTTCGTTTTCTTTATTCTCGTCTCCTCCGGCACTaGGTCCGCCACCGCTCCCTCCGCCGCCGCCGCCGCTGCCGCTTC +
Preference number: 5 (lower is better)
Translates to: RLKGVRFLYSRLLRH*VRHRSLRRRRRCRF
Trigger: GAAGCGGCAGCGGCGGCGGCGGCGGAGGGAGCGGTGGCGGACGCAGTGCCGGAGGAGACGAGAATAAAGAAAACGAACGCCCTTCAGCCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GGTCTGTCTCAATACAGAGTAAGCCAGGACCTCCCTGCCCCGAGGAAGAGCCTGACGATGGCGGCCTCGTaGTCGGCCAGGCCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: GLSQYRVSQDLPAPRKSLTMAAS*SARPRR
Trigger: CCTCCTGGGCCTGGCCGACAACGAGGCCGCCATCGT...CAGGCTCTTCCTCGGGGCAGGGAGGTCCTGGCTTACTCTGTATTGAGACAGACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp ATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTGCCCCAGCCAACGCAGAACTTTCCGCGGCTCGGTGTaGGCTTCCTGTTTGAGCTGC +
Preference number: 5 (lower is better)
Translates to: MNGRRAEGAELCPSQRRTFRGSV*ASCLSC
Trigger: GCAGCTCAAACAGGAAGCCAACACCGAGCCGCGGAA...AGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp ATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTGCCCCAGCCAACGCAGAACTACGAGGTTGGCTTGTTaGGTGACCAGGGACGGGTCC +
Preference number: 5 (lower is better)
Translates to: MNGRRAEGAELCPSQRRTTRLAC*VTRDGS
Trigger: GGACCCGTCCCTGGTCACCAAACAAGCCAACCTCGT...AGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp ATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTGCCCCAGCCAACGCAGAACTGGGAAGGCCACGTGGTaGAGGGCCAGGTCAAAGAAC +
Preference number: 5 (lower is better)
Translates to: MNGRRAEGAELCPSQRRTGKATW*RARSKN
Trigger: GTTCTTTGACCTGGCCCTCAACCACGTGGCCTTCCC...AGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp ATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTGCCCCAGCCAACGCAGAACTGGGAAGTGCACGAGGTaGGCTTGTTTGGTGACCAGG +
Preference number: 5 (lower is better)
Translates to: MNGRRAEGAELCPSQRRTGKCTR*ACLVTR
Trigger: CCTGGTCACCAAACAAGCCAACCTCGTGCACTTCCC...AGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 90 bp TCCAGGATGGCTGCGGCCTGCAGCGAGCACTTCTCTGACCGCACTTaGGTGATGAGTTCTTGCACGTCGGGCAGGTCCTTCAGGCTGTTC +
Preference number: 5 (lower is better)
Translates to: SRMAAACSEHFSDRT*VMSSCTSGRSFRLF
Trigger: GAACAGCCTGAAGGACCTGCCCGACGTGCAAGAACTCATCACTCAAGTGCGGTCAGAGAAGTGCTCGCTGCAGGCCGCAGCCATCCTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GGTCTGTCTCAATACAGAGTAAGCCAGGACCTCCCTGCCCCGAGGAAGAGCCTGTTGGCATCCACCCGGTaGCTCTCACACAAGCGCTCC +
Preference number: 5 (lower is better)
Translates to: GLSQYRVSQDLPAPRKSLLASTR*LSHKRS
Trigger: GGAGCGCTTGTGTGAGAGCAACCGGGTGGATGCCAA...CAGGCTCTTCCTCGGGGCAGGGAGGTCCTGGCTTACTCTGTATTGAGACAGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp ATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTGCCCCAGCCAACGCAGAACTGCAGGTACTGGAGATTaGACACCTTCCCAGACTCTC +
Preference number: 5 (lower is better)
Translates to: MNGRRAEGAELCPSQRRTAGTGD*TPSQTL
Trigger: GAGAGTCTGGGAAGGTGTCAAATCTCCAGTACCTGC...AGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp ATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTGCCCCAGCCAACGCAGAACTTTGAGTGATGAGTTCTaGCACGTCGGGCAGGTCCTT +
Preference number: 5 (lower is better)
Translates to: MNGRRAEGAELCPSQRRTLSDEF*HVGQVL
Trigger: AAGGACCTGCCCGACGTGCAAGAACTCATCACTCAA...AGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp ATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTGCCCCAGCCAACGCAGAACTGTCTTCTGCTCCAATTaGTCCTCAAGGGGTGGGAAG +
Preference number: 5 (lower is better)
Translates to: MNGRRAEGAELCPSQRRTVFCSN*SSRGGK
Trigger: CTTCCCACCCCTTGAGGACAAATTGGAGCAGAAGAC...AGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 90 bp ACTCCACCTCACTCATGGTCGCCGCCTGCTTGGCTCGAGTCTGAGTaGTCAAGGCCTCAAGTTTTTCAGCAAGGAGCCCCTCTGTGCCCC +
Preference number: 5 (lower is better)
Translates to: TPPHSWSPPAWLESE*SRPQVFQQGAPLCP
Trigger: GGGGCACAGAGGGGCTCCTTGCTGAAAAACTTGAGGCCTTGATCACTCAGACTCGAGCCAAGCAGGCGGCGACCATGAGTGAGGTGGAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 90 bp CGCCACTCCACCTCACTCATGGTCGCCGCCTGCTTGGCTCGAGTCTaGGTGATCAAGGCCTCAAGTTTTTCAGCAAGGAGCCCCTCTGTG +
Preference number: 5 (lower is better)
Translates to: RHSTSLMVAACLARV*VIKASSFSARSPSV
Trigger: CACAGAGGGGCTCCTTGCTGAAAAACTTGAGGCCTTGATCACTCAGACTCGAGCCAAGCAGGCGGCGACCATGAGTGAGGTGGAGTGGCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS GCA 90 bp CCGTGTAGGCCTGAGCCTCTAGCTTGGTCTTGGCATCCACCCGGTTaGTCTCACACAAGCGCTCCAGTTCCTCTGCATGCTTCACGGCTT +
Preference number: 5 (lower is better)
Translates to: PCRPEPLAWSWHPPG*SHTSAPVPLHASRL
Trigger: AAGCCGTGAAGCATGCAGAGGAACTGGAGCGCTTGTGTGAGAGCAACCGGGTGGATGCCAAGACCAAGCTAGAGGCTCAGGCCTACACGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CCA 90 bp AGCATGGACTCGAACAGACGCTCCTTCGTTTCTTCACTTTCAGCCTaGACGATGGCGGCCTCGTTGTCGGCCAGGCCCAGGAGGAAGATC +
Preference number: 5 (lower is better)
Translates to: SMDSNRRSFVSSLSA*TMAASLSARPRRKI
Trigger: GATCTTCCTCCTGGGCCTGGCCGACAACGAGGCCGCCATCGTCCAGGCTGAAAGTGAAGAAACGAAGGAGCGTCTGTTCGAGTCCATGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CCA 90 bp GGCCAGGTCAAAGAACAAAGGCTTGCAAGGGATGGGCTGGAACCCTaGTGGGAAGTGCACGAGGTTGGCTTGTTTGGTGACCAGGGACGG +
Preference number: 5 (lower is better)
Translates to: GQVKEQRLARDGLEP*WEVHEVGLFGDQGR
Trigger: CCGTCCCTGGTCACCAAACAAGCCAACCTCGTGCACTTCCCACCAGGGTTCCAGCCCATCCCTTGCAAGCCTTTGTTCTTTGACCTGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp ATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTGCCCCAGCCAACGCAGAACTATCTGCATGAGCTCATaGATAGCTGACTGGTCCCCA +
Preference number: 5 (lower is better)
Translates to: MNGRRAEGAELCPSQRRTICMSS*IADWSP
Trigger: TGGGGACCAGTCAGCTATCAATGAGCTCATGCAGAT...AGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 90 bp TGGGCTGGAACCCTGGTGGGAAGTGCACGAGGTTGGCTTGTTTGGTaGCCAGGGACGGGTCCAGGCAAAAGGACTCAAACCGTTCAACCA +
Preference number: 5 (lower is better)
Translates to: WAGTLVGSARGWLVW*PGTGPGKRTQTVQP
Trigger: TGGTTGAACGGTTTGAGTCCTTTTGCCTGGACCCGTCCCTGGTCACCAAACAAGCCAACCTCGTGCACTTCCCACCAGGGTTCCAGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS GCA 90 bp AAGAACAAAGGCTTGCAAGGGATGGGCTGGAACCCTGGTGGGAAGTaGACGAGGTTGGCTTGTTTGGTGACCAGGGACGGGTCCAGGCAA +
Preference number: 5 (lower is better)
Translates to: KNKGLQGMGWNPGGK*TRLACLVTRDGSRQ
Trigger: TTGCCTGGACCCGTCCCTGGTCACCAAACAAGCCAACCTCGTGCACTTCCCACCAGGGTTCCAGCCCATCCCTTGCAAGCCTTTGTTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CCA 90 bp CAGGTCAAAGAACAAAGGCTTGCAAGGGATGGGCTGGAACCCTGGTaGGAAGTGCACGAGGTTGGCTTGTTTGGTGACCAGGGACGGGTC +
Preference number: 5 (lower is better)
Translates to: QVKEQRLARDGLEPW*EVHEVGLFGDQGRV
Trigger: GACCCGTCCCTGGTCACCAAACAAGCCAACCTCGTGCACTTCCCACCAGGGTTCCAGCCCATCCCTTGCAAGCCTTTGTTCTTTGACCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp ATGAACGGCCGCAGGGCTGAGGGTGCTGAGCTCTGCCCCAGCCAACGCAGAACTTTCCCCATCTTAAAGTaGAGTGTTTTCCGGAGGCGT +
Preference number: 5 (lower is better)
Translates to: MNGRRAEGAELCPSQRRTFPILK*SVFRRR
Trigger: ACGCCTCCGGAAAACACTCAACTTTAAGATGGGGAA...AGTTCTGCGTTGGCTGGGGCAGAGCTCAGCACCCTCAGCCCTGCGGCCGTTCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021133.16
CDS-3UTR CAA 90 bp ACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGACGATGGCGGCCTCGTaGTCGGCCAGGCCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: TLGDTARISVIDKLQETLTMAAS*SARPRR
Trigger: CCTCCTGGGCCTGGCCGACAACGAGGCCGCCATCGT...CAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS GCA 90 bp CCCCTGTACCGCTGGAAGTCTCCGTGCCGTAAGCCATGCTGCTGCTaGGACTCCTTAATGATCTGCAGAATCTCCAAACTCAGGCTGTCC +
Preference number: 5 (lower is better)
Translates to: PLYRWKSPCRKPCCC*DSLMICRISKLRLS
Trigger: GGACAGCCTGAGTTTGGAGATTCTGCAGATCATTAAGGAGTCGCAGCAGCAGCATGGCTTACGGCACGGAGACTTCCAGCGGTACAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021133.16
CDS GCA 90 bp CTTGGCATCCACCCGGTTGCTCTCACACAAGCGCTCCAGTTCCTCTaGATGCTTCACGGCTTTTCGAAGGCGAGACAGCAAGTGAAACCG +
Preference number: 5 (lower is better)
Translates to: LGIHPVALTQALQFL*MLHGFSKARQQVKP
Trigger: CGGTTTCACTTGCTGTCTCGCCTTCGAAAAGCCGTGAAGCATGCAGAGGAACTGGAGCGCTTGTGTGAGAGCAACCGGGTGGATGCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CCA 90 bp TGGTTGAGGGCCAGGTCAAAGAACAAAGGCTTGCAAGGGATGGGCTaGAACCCTGGTGGGAAGTGCACGAGGTTGGCTTGTTTGGTGACC +
Preference number: 5 (lower is better)
Translates to: WLRARSKNKGLQGMG*NPGGKCTRLACLVT
Trigger: GGTCACCAAACAAGCCAACCTCGTGCACTTCCCACCAGGGTTCCAGCCCATCCCTTGCAAGCCTTTGTTCTTTGACCTGGCCCTCAACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GTCATTGACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTCTCTTCCCTCACGGCTaGGAGGGCGTCTCGGCACTC +
Preference number: 5 (lower is better)
Translates to: VIDKLQETLDSHSEEGSFLFPHG*EGVSAL
Trigger: GAGTGCCGAGACGCCCTCCAAGCCGTGAGGGAAGAG...AAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTCAATGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GGTCTGTCTCAATACAGAGTAAGCCAGGACCTCCCTGCCCCGAGGAAGAGCCTGGCAGGTACTGGAGATTaGACACCTTCCCAGACTCTC +
Preference number: 5 (lower is better)
Translates to: GLSQYRVSQDLPAPRKSLAGTGD*TPSQTL
Trigger: GAGAGTCTGGGAAGGTGTCAAATCTCCAGTACCTGC...CAGGCTCTTCCTCGGGGCAGGGAGGTCCTGGCTTACTCTGTATTGAGACAGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GTCATTGACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTGGCCTGGGAGAGCGCTaGCTGTCATCTTCCGGCTGC +
Preference number: 5 (lower is better)
Translates to: VIDKLQETLDSHSEEGSFGLGER*LSSSGC
Trigger: GCAGCCGGAAGATGACAGCAAGCGCTCTCCCAGGCC...AAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTCAATGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 90 bp ACAGCAAGTGAAACCGTTTCCGCGGCTCGGTGTTGGCTTCCTGTTTaGGCTGCATGGCGTAGCTCCAGGCTCTTTCTGCATCCATCAGCA +
Preference number: 5 (lower is better)
Translates to: TASETVSAARCWLPV*AAWRSSRLFLHPSA
Trigger: TGCTGATGGATGCAGAAAGAGCCTGGAGCTACGCCATGCAGCTCAAACAGGAAGCCAACACCGAGCCGCGGAAACGGTTTCACTTGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 90 bp AGTTCCTCTGCATGCTTCACGGCTTTTCGAAGGCGAGACAGCAAGTaGAACCGTTTCCGCGGCTCGGTGTTGGCTTCCTGTTTGAGCTGC +
Preference number: 5 (lower is better)
Translates to: SSSACFTAFRRRDSK*NRFRGSVLASCLSC
Trigger: GCAGCTCAAACAGGAAGCCAACACCGAGCCGCGGAAACGGTTTCACTTGCTGTCTCGCCTTCGAAAAGCCGTGAAGCATGCAGAGGAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GTAAGGCTGACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAAGGCCTGGGAGAGCGCTaGCTGTCATCTTCCGGCTGC +
Preference number: 5 (lower is better)
Translates to: VRLTTTLGDTARISVIDKGLGER*LSSSGC
Trigger: GCAGCCGGAAGATGACAGCAAGCGCTCTCCCAGGCC...TTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGTCAGCCTTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 90 bp CAAACTCAGGCTGTCCCCGAACTCTTTGTTTGCCTTCGATCCGGCTaGAGGGCGTTCGTTTTCTTTATTCTCGTCTCCTCCGGCACTGCG +
Preference number: 5 (lower is better)
Translates to: QTQAVPELFVCLRSG*RAFVFFILVSSGTA
Trigger: CGCAGTGCCGGAGGAGACGAGAATAAAGAAAACGAACGCCCTTCAGCCGGATCGAAGGCAAACAAAGAGTTCGGGGACAGCCTGAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS GCA 90 bp TCCATCAGCACCAGCAGCAAGTATCTGTACCGCTGGAAGTCTCCGTaGCGTAAGCCATGCTGCTGCTGCGACTCCTTAATGATCTGCAGA +
Preference number: 5 (lower is better)
Translates to: SISTSSKYLYRWKSP*RKPCCCCDSLMICR
Trigger: TCTGCAGATCATTAAGGAGTCGCAGCAGCAGCATGGCTTACGGCACGGAGACTTCCAGCGGTACAGATACTTGCTGCTGGTGCTGATGGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106425.4
CDS GCA 90 bp GTTGGCTTCCTGTTTGAGCTGCATGGCGTAGCTCCAGGCTCTTTCTaGATCCATCAGCACCAGCAGCAAGTATCTGTACCGCTGGAAGTC +
Preference number: 5 (lower is better)
Translates to: VGFLFELHGVAPGSF*IHQHQQQVSVPLEV
Trigger: GACTTCCAGCGGTACAGATACTTGCTGCTGGTGCTGATGGATGCAGAAAGAGCCTGGAGCTACGCCATGCAGCTCAAACAGGAAGCCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106425.4
CDS CCA 90 bp TTAGTCTTCTGCTCCAATTTGTCCTCAAGGGGTGGGAAGGCCACGTaGTTGAGGGCCAGGTCAAAGAACAAAGGCTTGCAAGGGATGGGC +
Preference number: 5 (lower is better)
Translates to: LVFCSNLSSRGGKAT*LRARSKNKGLQGMG
Trigger: GCCCATCCCTTGCAAGCCTTTGTTCTTTGACCTGGCCCTCAACCACGTGGCCTTCCCACCCCTTGAGGACAAATTGGAGCAGAAGACTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTCAAATCTTGGCATCCACCCGGTaGCTCTCACACAAGCGCTCC +
Preference number: 5 (lower is better)
Translates to: DKLQETLDSHSEEGSFQILASTR*LSHKRS
Trigger: GGAGCGCTTGTGTGAGAGCAACCGGGTGGATGCCAA...GATTTGAAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS GCA 90 bp TATCTGTACCGCTGGAAGTCTCCGTGCCGTAAGCCATGCTGCTGCTaGGACTCCTTAATGATCTGCAGAATCTCCAAACTCAGGCTGTCC +
Preference number: 5 (lower is better)
Translates to: YLYRWKSPCRKPCCC*DSLMICRISKLRLS
Trigger: GGACAGCCTGAGTTTGGAGATTCTGCAGATCATTAAGGAGTCGCAGCAGCAGCATGGCTTACGGCACGGAGACTTCCAGCGGTACAGATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106425.4
CDS CCA 90 bp TGTGAGGCCACTCTTAGTCTTCTGCTCCAATTTGTCCTCAAGGGGTaGGAAGGCCACGTGGTTGAGGGCCAGGTCAAAGAACAAAGGCTT +
Preference number: 5 (lower is better)
Translates to: CEATLSLLLQFVLKG*EGHVVEGQVKEQRL
Trigger: AAGCCTTTGTTCTTTGACCTGGCCCTCAACCACGTGGCCTTCCCACCCCTTGAGGACAAATTGGAGCAGAAGACTAAGAGTGGCCTCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGGACTCTTTCCGCGGCTCGGTGTaGGCTTCCTGTTTGAGCTGC +
Preference number: 5 (lower is better)
Translates to: GDTARISVIDKLQETLDSFRGSV*ASCLSC
Trigger: GCAGCTCAAACAGGAAGCCAACACCGAGCCGCGGAA...AGAGTCCAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GTAAGGCTGACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAAGGGAAGGCCACGTGGTaGAGGGCCAGGTCAAAGAAC +
Preference number: 5 (lower is better)
Translates to: VRLTTTLGDTARISVIDKGKATW*RARSKN
Trigger: GTTCTTTGACCTGGCCCTCAACCACGTGGCCTTCCC...TTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGTCAGCCTTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 90 bp TGCACGTCGGGCAGGTCCTTCAGGCTGTTCTTGGAGGCTCCTCCGTaGGAACTCACTTCATTTGCATATTTGAGAACTCTGTCGTACAGG +
Preference number: 5 (lower is better)
Translates to: CTSGRSFRLFLEAPP*ELTSFAYLRTLSYR
Trigger: CCTGTACGACAGAGTTCTCAAATATGCAAATGAAGTGAGTTCTCACGGAGGAGCCTCCAAGAACAGCCTGAAGGACCTGCCCGACGTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS GCA 90 bp GTTGGCTTCCTGTTTGAGCTGCATGGCGTAGCTCCAGGCTCTTTCTaGATCCATCAGCACCAGCAGCAAGTATCTGTTATCAGTCAGGAG +
Preference number: 5 (lower is better)
Translates to: VGFLFELHGVAPGSF*IHQHQQQVSVISQE
Trigger: CTCCTGACTGATAACAGATACTTGCTGCTGGTGCTGATGGATGCAGAAAGAGCCTGGAGCTACGCCATGCAGCTCAAACAGGAAGCCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021133.16
CDS GCA 90 bp AAGTATCTGTACCGCTGGAAGTCTCCGTGCCGTAAGCCATGCTGCTaGTGCGACTCCTTAATGATCTGCAGAATCTCCAAACTCAGGCTG +
Preference number: 5 (lower is better)
Translates to: KYLYRWKSPCRKPCC*CDSLMICRISKLRL
Trigger: CAGCCTGAGTTTGGAGATTCTGCAGATCATTAAGGAGTCGCAGCAGCAGCATGGCTTACGGCACGGAGACTTCCAGCGGTACAGATACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106425.4
CDS GCA 90 bp AGCAAGTATCTGTACCGCTGGAAGTCTCCGTGCCGTAAGCCATGCTaGTGCTGCGACTCCTTAATGATCTGCAGAATCTCCAAACTCAGG +
Preference number: 5 (lower is better)
Translates to: SKYLYRWKSPCRKPC*CCDSLMICRISKLR
Trigger: CCTGAGTTTGGAGATTCTGCAGATCATTAAGGAGTCGCAGCAGCAGCATGGCTTACGGCACGGAGACTTCCAGCGGTACAGATACTTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106425.4
CDS GCA 90 bp AGCAGCAAGTATCTGTACCGCTGGAAGTCTCCGTGCCGTAAGCCATaGTGCTGCTGCGACTCCTTAATGATCTGCAGAATCTCCAAACTC +
Preference number: 5 (lower is better)
Translates to: SSKYLYRWKSPCRKP*CCCDSLMICRISKL
Trigger: GAGTTTGGAGATTCTGCAGATCATTAAGGAGTCGCAGCAGCAGCATGGCTTACGGCACGGAGACTTCCAGCGGTACAGATACTTGCTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GTCATTGACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTCTGTCCCCGAACTCTTaGTTTGCCTTCGATCCGGCT +
Preference number: 5 (lower is better)
Translates to: VIDKLQETLDSHSEEGSFLSPNS*FAFDPA
Trigger: AGCCGGATCGAAGGCAAACAAAGAGTTCGGGGACAG...AAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTCAATGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GCGAGGAGGGGTCATTTCAAATCCATGGGACTGAGGACACATGACAAACACTCCTTTGATGAGAGTCGTTaGCATCCAGGATGGCTGCGG +
Preference number: 5 (lower is better)
Translates to: ARRGHFKSMGLRTHDKHSFDESR*HPGWLR
Trigger: CCGCAGCCATCCTGGATGCAAACGACTCTCATCAAA...GGAGTGTTTGTCATGTGTCCTCAGTCCCATGGATTTGAAATGACCCCTCCTCGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GTAAGGCTGACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAAGGGAAGTGCACGAGGTaGGCTTGTTTGGTGACCAGG +
Preference number: 5 (lower is better)
Translates to: VRLTTTLGDTARISVIDKGKCTR*ACLVTR
Trigger: CCTGGTCACCAAACAAGCCAACCTCGTGCACTTCCC...TTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGTCAGCCTTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS GCA 90 bp CTTCAGGCTGTTCTTGGAGGCTCCTCCGTGAGAACTCACTTCATTTaGATATTTGAGAACTCTGTCGTACAGGACGAGGGCTTCGCTCCA +
Preference number: 5 (lower is better)
Translates to: LQAVLGGSSVRTHFI*IFENSVVQDEGFAP
Trigger: TGGAGCGAAGCCCTCGTCCTGTACGACAGAGTTCTCAAATATGCAAATGAAGTGAGTTCTCACGGAGGAGCCTCCAAGAACAGCCTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp ACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGCCCCGAACTCTTTGTTaGCCTTCGATCCGGCTGAAG +
Preference number: 5 (lower is better)
Translates to: TTTLGDTARISVIDKLQEPRTLC*PSIRLK
Trigger: CTTCAGCCGGATCGAAGGCAAACAAAGAGTTCGGGG...CTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GTAAGGCTGACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACCCCGAACTCTTTGTTaGCCTTCGATCCGGCTGAAG +
Preference number: 5 (lower is better)
Translates to: VRLTTTLGDTARISVIDKPRTLC*PSIRLK
Trigger: CTTCAGCCGGATCGAAGGCAAACAAAGAGTTCGGGG...TTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGTCAGCCTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GTCATTGACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTTTGAGTGATGAGTTCTaGCACGTCGGGCAGGTCCTT +
Preference number: 5 (lower is better)
Translates to: VIDKLQETLDSHSEEGSFLSDEF*HVGQVL
Trigger: AAGGACCTGCCCGACGTGCAAGAACTCATCACTCAA...AAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTCAATGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 90 bp GGACTCAAACCGTTCAACCAGAGGCGTATTGTCTTTGACTTGGGATaGGGTGTCTGTTTGATGAGAGTCGTTTGCATCCAGGATGGCTGC +
Preference number: 5 (lower is better)
Translates to: GLKPFNQRRIVFDLG*GVCLMRVVCIQDGC
Trigger: GCAGCCATCCTGGATGCAAACGACTCTCATCAAACAGACACCTCATCCCAAGTCAAAGACAATACGCCTCTGGTTGAACGGTTTGAGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGGACTCTTTTCCGGAGGCGTCTTaGTCTTCGAGAACAGTAGCC +
Preference number: 5 (lower is better)
Translates to: GDTARISVIDKLQETLDSFPEAS*SSRTVA
Trigger: GGCTACTGTTCTCGAAGACAAAGACGCCTCCGGAAA...AGAGTCCAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021133.16
CDS-3UTR CAA 90 bp ACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGTCTTCTACACGCTGGTaGTACAACACAGCCTGCTCC +
Preference number: 5 (lower is better)
Translates to: TLGDTARISVIDKLQETLSSTRW*YNTACS
Trigger: GGAGCAGGCTGTGTTGTACAACCAGCGTGTAGAAGA...CAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GTAAGGCTGACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAATCTTCTACACGCTGGTaGTACAACACAGCCTGCTCC +
Preference number: 5 (lower is better)
Translates to: VRLTTTLGDTARISVIDKSSTRW*YNTACS
Trigger: GGAGCAGGCTGTGTTGTACAACCAGCGTGTAGAAGA...TTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGTCAGCCTTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTCAAATCATCTGCATGAGCTCATaGATAGCTGACTGGTCCCCA +
Preference number: 5 (lower is better)
Translates to: DKLQETLDSHSEEGSFQIICMSS*IADWSP
Trigger: TGGGGACCAGTCAGCTATCAATGAGCTCATGCAGAT...GATTTGAAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 90 bp TGTTCTTGGAGGCTCCTCCGTGAGAACTCACTTCATTTGCATATTTaGGAACTCTGTCGTACAGGACGAGGGCTTCGCTCCACTTCTTCA +
Preference number: 5 (lower is better)
Translates to: CSWRLLRENSLHLHI*ELCRTGRGLRSTSS
Trigger: TGAAGAAGTGGAGCGAAGCCCTCGTCCTGTACGACAGAGTTCTCAAATATGCAAATGAAGTGAGTTCTCACGGAGGAGCCTCCAAGAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GCAGAACTGGATTTAATGCCATGGAACTTGTCGGGTCTGTCTCAATACAGAGTACTGTCCCCGAACTCTTaGTTTGCCTTCGATCCGGCT +
Preference number: 5 (lower is better)
Translates to: AELDLMPWNLSGLSQYRVLSPNS*FAFDPA
Trigger: AGCCGGATCGAAGGCAAACAAAGAGTTCGGGGACAG...TACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GCGAGGAGGGGTCATTTCAAATCCATGGGACTGAGGACACATGACAAACACTCCGGCAGATTTCCACTCTaGATGTTCAAAGCGCAACAT +
Preference number: 5 (lower is better)
Translates to: ARRGHFKSMGLRTHDKHSGRFPL*MFKAQH
Trigger: ATGTTGCGCTTTGAACATCAAGAGTGGAAATCTGCC...GGAGTGTTTGTCATGTGTCCTCAGTCCCATGGATTTGAAATGACCCCTCCTCGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp ACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTCTGTCAAAGAACAAAGGCTaGCAAGGGATGGGCTGGAAC +
Preference number: 5 (lower is better)
Translates to: TLGDTARISVIDKLQETLSKNKG*QGMGWN
Trigger: GTTCCAGCCCATCCCTTGCAAGCCTTTGTTCTTTGA...CAGAGTCTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GACAAACTTCAGGAGACTCTGGACTCTCACAGCGAGGAGGGGTCATTTCAAATCGGCAGATTTCCACTCTaGATGTTCAAAGCGCAACAT +
Preference number: 5 (lower is better)
Translates to: DKLQETLDSHSEEGSFQIGRFPL*MFKAQH
Trigger: ATGTTGCGCTTTGAACATCAAGAGTGGAAATCTGCC...GATTTGAAATGACCCCTCCTCGCTGTGAGAGTCCAGAGTCTCCTGAAGTTTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GCAGAACTGGATTTAATGCCATGGAACTTGTCGGGTCTGTCTCAATACAGAGTATCAAAGAACAAAGGCTaGCAAGGGATGGGCTGGAAC +
Preference number: 5 (lower is better)
Translates to: AELDLMPWNLSGLSQYRVSKNKG*QGMGWN
Trigger: GTTCCAGCCCATCCCTTGCAAGCCTTTGTTCTTTGA...TACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp AGAACTGGATTTAATGCCATGGAACTTGTCGGGTCTGTCTCAATACAGAGTAAGGTCTTCTGCTCCAATTaGTCCTCAAGGGGTGGGAAG +
Preference number: 5 (lower is better)
Translates to: RTGFNAMELVGSVSIQSKVFCSN*SSRGGK
Trigger: CTTCCCACCCCTTGAGGACAAATTGGAGCAGAAGAC...CTTACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GCAGAACTGGATTTAATGCCATGGAACTTGTCGGGTCTGTCTCAATACAGAGTATTCTTCCCCGTGAATTaGTGTCTGTTCCCCATCTTA +
Preference number: 5 (lower is better)
Translates to: AELDLMPWNLSGLSQYRVFFPVN*CLFPIL
Trigger: TAAGATGGGGAACAGACACAAATTCACGGGGAAGAA...TACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021133.16
CDS-3UTR CAA 90 bp ACCACAACTCTGGGTGACACTGCTCGCATTTCAGTCATTGACAAACTTCAGGAGACTTCATTTGCATATTaGAGAACTCTGTCGTACAGG +
Preference number: 5 (lower is better)
Translates to: TTTLGDTARISVIDKLQETSFAY*RTLSYR
Trigger: CCTGTACGACAGAGTTCTCAAATATGCAAATGAAGT...CTCCTGAAGTTTGTCAATGACTGAAATGCGAGCAGTGTCACCCAGAGTTGTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS-3UTR CAA 90 bp GCAGAACTGGATTTAATGCCATGGAACTTGTCGGGTCTGTCTCAATACAGAGTAACTTCATTTGCATATTaGAGAACTCTGTCGTACAGG +
Preference number: 5 (lower is better)
Translates to: AELDLMPWNLSGLSQYRVTSFAY*RTLSYR
Trigger: CCTGTACGACAGAGTTCTCAAATATGCAAATGAAGT...TACTCTGTATTGAGACAGACCCGACAAGTTCCATGGCATTAAATCCAGTTCTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CAA 72 bp TCGTTGTCGGCCAGGCCCAGGAGGAAGATCCTCACTTaGTCGATCTTCACGGGGACCGTCCGGCCTCGCCAC +
Preference number: 6 (lower is better)
Translates to: SLSARPRRKILT*SIFTGTVRPRH
Trigger: GTGGCGAGGCCGGACGGTCCCCGTGAAGATCGACAAAGTGAGGATCTTCCTCCTGGGCCTGGCCGACAACGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CAA 72 bp GGGATGGGCTGGAACCCTGGTGGGAAGTGCACGAGGTaGGCTTGTTTGGTGACCAGGGACGGGTCCAGGCAA +
Preference number: 6 (lower is better)
Translates to: GMGWNPGGKCTR*ACLVTRDGSRQ
Trigger: TTGCCTGGACCCGTCCCTGGTCACCAAACAAGCCAACCTCGTGCACTTCCCACCAGGGTTCCAGCCCATCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CCA 72 bp GACGCTCCTTCGTTTCTTCACTTTCAGCCTGGACGATaGCGGCCTCGTTGTCGGCCAGGCCCAGGAGGAAGA +
Preference number: 6 (lower is better)
Translates to: DAPSFLHFQPGR*RPRCRPGPGGR
Trigger: TCTTCCTCCTGGGCCTGGCCGACAACGAGGCCGCCATCGTCCAGGCTGAAAGTGAAGAAACGAAGGAGCGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CCA 72 bp TCGAACAGACGCTCCTTCGTTTCTTCACTTTCAGCCTaGACGATGGCGGCCTCGTTGTCGGCCAGGCCCAGG +
Preference number: 6 (lower is better)
Translates to: SNRRSFVSSLSA*TMAASLSARPR
Trigger: CCTGGGCCTGGCCGACAACGAGGCCGCCATCGTCCAGGCTGAAAGTGAAGAAACGAAGGAGCGTCTGTTCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CAA 72 bp CTGCTTCTGATCGGGCTTGAGCTCTTCCCTCACGGCTaGGAGGGCGTCTCGGCACTCACTCAGCATGGACTC +
Preference number: 6 (lower is better)
Translates to: LLLIGLELFPHG*EGVSALTQHGL
Trigger: GAGTCCATGCTGAGTGAGTGCCGAGACGCCCTCCAAGCCGTGAGGGAAGAGCTCAAGCCCGATCAGAAGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CAA 72 bp GGGCTGGAACCCTGGTGGGAAGTGCACGAGGTTGGCTaGTTTGGTGACCAGGGACGGGTCCAGGCAAAAGGA +
Preference number: 6 (lower is better)
Translates to: GLEPWWEVHEVG*FGDQGRVQAKG
Trigger: TCCTTTTGCCTGGACCCGTCCCTGGTCACCAAACAAGCCAACCTCGTGCACTTCCCACCAGGGTTCCAGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CAA 90 bp GCAAGGGATGGGCTGGAACCCTGGTGGGAAGTGCACGAGGTTGGCTaGTTTGGTGACCAGGGACGGGTCCAGGCAAAAGGACTCAAACCG +
Preference number: 6 (lower is better)
Translates to: ARDGLEPWWEVHEVG*FGDQGRVQAKGLKP
Trigger: CGGTTTGAGTCCTTTTGCCTGGACCCGTCCCTGGTCACCAAACAAGCCAACCTCGTGCACTTCCCACCAGGGTTCCAGCCCATCCCTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CAA 90 bp GGCTTGCAAGGGATGGGCTGGAACCCTGGTGGGAAGTGCACGAGGTaGGCTTGTTTGGTGACCAGGGACGGGTCCAGGCAAAAGGACTCA +
Preference number: 6 (lower is better)
Translates to: GLQGMGWNPGGKCTR*ACLVTRDGSRQKDS
Trigger: TGAGTCCTTTTGCCTGGACCCGTCCCTGGTCACCAAACAAGCCAACCTCGTGCACTTCCCACCAGGGTTCCAGCCCATCCCTTGCAAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CAA 90 bp GGTGGGAAGGCCACGTGGTTGAGGGCCAGGTCAAAGAACAAAGGCTaGCAAGGGATGGGCTGGAACCCTGGTGGGAAGTGCACGAGGTTG +
Preference number: 6 (lower is better)
Translates to: GGKATWLRARSKNKG*QGMGWNPGGKCTRL
Trigger: CAACCTCGTGCACTTCCCACCAGGGTTCCAGCCCATCCCTTGCAAGCCTTTGTTCTTTGACCTGGCCCTCAACCACGTGGCCTTCCCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CCA 72 bp GGTAAGCCGTGTAGGCCTGAGCCTCTAGCTTGGTCTTaGCATCCACCCGGTTGCTCTCACACAAGCGCTCCA +
Preference number: 6 (lower is better)
Translates to: GKPCRPEPLAWS*HPPGCSHTSAP
Trigger: TGGAGCGCTTGTGTGAGAGCAACCGGGTGGATGCCAAGACCAAGCTAGAGGCTCAGGCCTACACGGCTTACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CAA 72 bp GCCACGTGGTTGAGGGCCAGGTCAAAGAACAAAGGCTaGCAAGGGATGGGCTGGAACCCTGGTGGGAAGTGC +
Preference number: 6 (lower is better)
Translates to: ATWLRARSKNKG*QGMGWNPGGKC
Trigger: GCACTTCCCACCAGGGTTCCAGCCCATCCCTTGCAAGCCTTTGTTCTTTGACCTGGCCCTCAACCACGTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CAA 90 bp GGGATGGGCTGGAACCCTGGTGGGAAGTGCACGAGGTTGGCTTGTTaGGTGACCAGGGACGGGTCCAGGCAAAAGGACTCAAACCGTTCA +
Preference number: 6 (lower is better)
Translates to: GMGWNPGGKCTRLAC*VTRDGSRQKDSNRS
Trigger: TGAACGGTTTGAGTCCTTTTGCCTGGACCCGTCCCTGGTCACCAAACAAGCCAACCTCGTGCACTTCCCACCAGGGTTCCAGCCCATCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CAA 90 bp ATAGTCTCTCTGCTTCTGATCGGGCTTGAGCTCTTCCCTCACGGCTaGGAGGGCGTCTCGGCACTCACTCAGCATGGACTCGAACAGACG +
Preference number: 6 (lower is better)
Translates to: IVSLLLIGLELFPHG*EGVSALTQHGLEQT
Trigger: CGTCTGTTCGAGTCCATGCTGAGTGAGTGCCGAGACGCCCTCCAAGCCGTGAGGGAAGAGCTCAAGCCCGATCAGAAGCAGAGAGACTAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 72 bp ACCCTGGTGGGAAGTGCACGAGGTTGGCTTGTTTGGTaGCCAGGGACGGGTCCAGGCAAAAGGACTCAAACC +
Preference number: 6 (lower is better)
Translates to: TLVGSARGWLVW*PGTGPGKRTQT
Trigger: GGTTTGAGTCCTTTTGCCTGGACCCGTCCCTGGTCACCAAACAAGCCAACCTCGTGCACTTCCCACCAGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CCA 72 bp CTGAGAGGTAAGCCGTGTAGGCCTGAGCCTCTAGCTTaGTCTTGGCATCCACCCGGTTGCTCTCACACAAGC +
Preference number: 6 (lower is better)
Translates to: LRGKPCRPEPLA*SWHPPGCSHTS
Trigger: GCTTGTGTGAGAGCAACCGGGTGGATGCCAAGACCAAGCTAGAGGCTCAGGCCTACACGGCTTACCTCTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CAA 72 bp TGGAACCCTGGTGGGAAGTGCACGAGGTTGGCTTGTTaGGTGACCAGGGACGGGTCCAGGCAAAAGGACTCA +
Preference number: 6 (lower is better)
Translates to: WNPGGKCTRLAC*VTRDGSRQKDS
Trigger: TGAGTCCTTTTGCCTGGACCCGTCCCTGGTCACCAAACAAGCCAACCTCGTGCACTTCCCACCAGGGTTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 72 bp GAAACCGTTTCCGCGGCTCGGTGTTGGCTTCCTGTTTaGGCTGCATGGCGTAGCTCCAGGCTCTTTCTGCAT +
Preference number: 6 (lower is better)
Translates to: ETVSAARCWLPV*AAWRSSRLFLH
Trigger: ATGCAGAAAGAGCCTGGAGCTACGCCATGCAGCTCAAACAGGAAGCCAACACCGAGCCGCGGAAACGGTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 72 bp GCATGCTTCACGGCTTTTCGAAGGCGAGACAGCAAGTaGAACCGTTTCCGCGGCTCGGTGTTGGCTTCCTGT +
Preference number: 6 (lower is better)
Translates to: ACFTAFRRRDSK*NRFRGSVLASC
Trigger: ACAGGAAGCCAACACCGAGCCGCGGAAACGGTTTCACTTGCTGTCTCGCCTTCGAAAAGCCGTGAAGCATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 72 bp CACTCATGGTCGCCGCCTGCTTGGCTCGAGTCTGAGTaGTCAAGGCCTCAAGTTTTTCAGCAAGGAGCCCCT +
Preference number: 6 (lower is better)
Translates to: HSWSPPAWLESE*SRPQVFQQGAP
Trigger: AGGGGCTCCTTGCTGAAAAACTTGAGGCCTTGATCACTCAGACTCGAGCCAAGCAGGCGGCGACCATGAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS GCA 72 bp CACCCGGTTGCTCTCACACAAGCGCTCCAGTTCCTCTaGATGCTTCACGGCTTTTCGAAGGCGAGACAGCAA +
Preference number: 6 (lower is better)
Translates to: HPVALTQALQFL*MLHGFSKARQQ
Trigger: TTGCTGTCTCGCCTTCGAAAAGCCGTGAAGCATGCAGAGGAACTGGAGCGCTTGTGTGAGAGCAACCGGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CCA 72 bp GAACAAAGGCTTGCAAGGGATGGGCTGGAACCCTGGTaGGAAGTGCACGAGGTTGGCTTGTTTGGTGACCAG +
Preference number: 6 (lower is better)
Translates to: EQRLARDGLEPW*EVHEVGLFGDQ
Trigger: CTGGTCACCAAACAAGCCAACCTCGTGCACTTCCCACCAGGGTTCCAGCCCATCCCTTGCAAGCCTTTGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CCA 72 bp GCCAGGTCAAAGAACAAAGGCTTGCAAGGGATGGGCTaGAACCCTGGTGGGAAGTGCACGAGGTTGGCTTGT +
Preference number: 6 (lower is better)
Translates to: ARSKNKGLQGMG*NPGGKCTRLAC
Trigger: ACAAGCCAACCTCGTGCACTTCCCACCAGGGTTCCAGCCCATCCCTTGCAAGCCTTTGTTCTTTGACCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 72 bp ACCTCACTCATGGTCGCCGCCTGCTTGGCTCGAGTCTaGGTGATCAAGGCCTCAAGTTTTTCAGCAAGGAGC +
Preference number: 6 (lower is better)
Translates to: TSLMVAACLARV*VIKASSFSARS
Trigger: GCTCCTTGCTGAAAAACTTGAGGCCTTGATCACTCAGACTCGAGCCAAGCAGGCGGCGACCATGAGTGAGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS GCA 72 bp CTGTACCGCTGGAAGTCTCCGTGCCGTAAGCCATGCTaGTGCTGCGACTCCTTAATGATCTGCAGAATCTCC +
Preference number: 6 (lower is better)
Translates to: LYRWKSPCRKPC*CCDSLMICRIS
Trigger: GGAGATTCTGCAGATCATTAAGGAGTCGCAGCAGCAGCATGGCTTACGGCACGGAGACTTCCAGCGGTACAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS GCA 72 bp ACCAGCAGCAAGTATCTGTACCGCTGGAAGTCTCCGTaGCGTAAGCCATGCTGCTGCTGCGACTCCTTAATG +
Preference number: 6 (lower is better)
Translates to: TSSKYLYRWKSP*RKPCCCCDSLM
Trigger: CATTAAGGAGTCGCAGCAGCAGCATGGCTTACGGCACGGAGACTTCCAGCGGTACAGATACTTGCTGCTGGT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106425.4
CDS GCA 72 bp CGCTGGAAGTCTCCGTGCCGTAAGCCATGCTGCTGCTaGGACTCCTTAATGATCTGCAGAATCTCCAAACTC +
Preference number: 6 (lower is better)
Translates to: RWKSPCRKPCCC*DSLMICRISKL
Trigger: GAGTTTGGAGATTCTGCAGATCATTAAGGAGTCGCAGCAGCAGCATGGCTTACGGCACGGAGACTTCCAGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS GCA 72 bp CTGTTTGAGCTGCATGGCGTAGCTCCAGGCTCTTTCTaGATCCATCAGCACCAGCAGCAAGTATCTGTACCG +
Preference number: 6 (lower is better)
Translates to: LFELHGVAPGSF*IHQHQQQVSVP
Trigger: CGGTACAGATACTTGCTGCTGGTGCTGATGGATGCAGAAAGAGCCTGGAGCTACGCCATGCAGCTCAAACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106425.4
CDS CCA 72 bp AAAGAACAAAGGCTTGCAAGGGATGGGCTGGAACCCTaGTGGGAAGTGCACGAGGTTGGCTTGTTTGGTGAC +
Preference number: 6 (lower is better)
Translates to: KEQRLARDGLEP*WEVHEVGLFGD
Trigger: GTCACCAAACAAGCCAACCTCGTGCACTTCCCACCAGGGTTCCAGCCCATCCCTTGCAAGCCTTTGTTCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 72 bp GCTGTCCCCGAACTCTTTGTTTGCCTTCGATCCGGCTaGAGGGCGTTCGTTTTCTTTATTCTCGTCTCCTCC +
Preference number: 6 (lower is better)
Translates to: AVPELFVCLRSG*RAFVFFILVSS
Trigger: GGAGGAGACGAGAATAAAGAAAACGAACGCCCTTCAGCCGGATCGAAGGCAAACAAAGAGTTCGGGGACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS GCA 72 bp TACCGCTGGAAGTCTCCGTGCCGTAAGCCATGCTGCTaGTGCGACTCCTTAATGATCTGCAGAATCTCCAAA +
Preference number: 6 (lower is better)
Translates to: YRWKSPCRKPCC*CDSLMICRISK
Trigger: TTTGGAGATTCTGCAGATCATTAAGGAGTCGCAGCAGCAGCATGGCTTACGGCACGGAGACTTCCAGCGGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CCA 72 bp ACTCTTAGTCTTCTGCTCCAATTTGTCCTCAAGGGGTaGGAAGGCCACGTGGTTGAGGGCCAGGTCAAAGAA +
Preference number: 6 (lower is better)
Translates to: TLSLLLQFVLKG*EGHVVEGQVKE
Trigger: TTCTTTGACCTGGCCCTCAACCACGTGGCCTTCCCACCCCTTGAGGACAAATTGGAGCAGAAGACTAAGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CAA 72 bp TGCAGAATCTCCAAACTCAGGCTGTCCCCGAACTCTTaGTTTGCCTTCGATCCGGCTGAAGGGCGTTCGTTT +
Preference number: 6 (lower is better)
Translates to: CRISKLRLSPNS*FAFDPAEGRSF
Trigger: AAACGAACGCCCTTCAGCCGGATCGAAGGCAAACAAAGAGTTCGGGGACAGCCTGAGTTTGGAGATTCTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 72 bp GATGTAGGTCAGGTAGCTGTGCAGGTACTGGAGATTTaGCACCTTCCCAGACTCTCCATCAAGGGCATAGTC +
Preference number: 6 (lower is better)
Translates to: DVGQVAVQVLEI*HLPRLSIKGIV
Trigger: GACTATGCCCTTGATGGAGAGTCTGGGAAGGTGTCAAATCTCCAGTACCTGCACAGCTACCTGACCTACATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS GCA 72 bp CTGTTTGAGCTGCATGGCGTAGCTCCAGGCTCTTTCTaGATCCATCAGCACCAGCAGCAAGTATCTGTTATC +
Preference number: 6 (lower is better)
Translates to: LFELHGVAPGSF*IHQHQQQVSVI
Trigger: GATAACAGATACTTGCTGCTGGTGCTGATGGATGCAGAAAGAGCCTGGAGCTACGCCATGCAGCTCAAACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021133.16
CDS CAA 72 bp GAATCTCCAAACTCAGGCTGTCCCCGAACTCTTTGTTaGCCTTCGATCCGGCTGAAGGGCGTTCGTTTTCTT +
Preference number: 6 (lower is better)
Translates to: ESPNSGCPRTLC*PSIRLKGVRFL
Trigger: AAGAAAACGAACGCCCTTCAGCCGGATCGAAGGCAAACAAAGAGTTCGGGGACAGCCTGAGTTTGGAGATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 72 bp GGCAGGTCCTTCAGGCTGTTCTTGGAGGCTCCTCCGTaGGAACTCACTTCATTTGCATATTTGAGAACTCTG +
Preference number: 6 (lower is better)
Translates to: GRSFRLFLEAPP*ELTSFAYLRTL
Trigger: CAGAGTTCTCAAATATGCAAATGAAGTGAGTTCTCACGGAGGAGCCTCCAAGAACAGCCTGAAGGACCTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CCA 72 bp ACTGGTCCCCAATGTTGTATGCACAGTAGCGGATGTTaGGCGAGATCTCTTCTACACGCTGGTTGTACAACA +
Preference number: 6 (lower is better)
Translates to: TGPQCCMHSSGC*ARSLLHAGCTT
Trigger: TGTTGTACAACCAGCGTGTAGAAGAGATCTCGCCCAACATCCGCTACTGTGCATACAACATTGGGGACCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 72 bp CCGTTCAACCAGAGGCGTATTGTCTTTGACTTGGGATaGGGTGTCTGTTTGATGAGAGTCGTTTGCATCCAG +
Preference number: 6 (lower is better)
Translates to: PFNQRRIVFDLG*GVCLMRVVCIQ
Trigger: CTGGATGCAAACGACTCTCATCAAACAGACACCTCATCCCAAGTCAAAGACAATACGCCTCTGGTTGAACGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS CAA 90 bp TTAATGATCTGCAGAATCTCCAAACTCAGGCTGTCCCCGAACTCTTaGTTTGCCTTCGATCCGGCTGAAGGGCGTTCGTTTTCTTTATTC +
Preference number: 6 (lower is better)
Translates to: LMICRISKLRLSPNS*FAFDPAEGRSFSLF
Trigger: GAATAAAGAAAACGAACGCCCTTCAGCCGGATCGAAGGCAAACAAAGAGTTCGGGGACAGCCTGAGTTTGGAGATTCTGCAGATCATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4
CDS TCA 72 bp AGGACTCAAACCGTTCAACCAGAGGCGTATTGTCTTTaGCTTGGGATGAGGTGTCTGTTTGATGAGAGTCGT +
Preference number: 6 (lower is better)
Translates to: RTQTVQPEAYCL*LGMRCLFDESR
Trigger: ACGACTCTCATCAAACAGACACCTCATCCCAAGTCAAAGACAATACGCCTCTGGTTGAACGGTTTGAGTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021133.16
ENSMUST00000106425.4