Pregenerated sensors for SRP54C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079108Ensembl transcript IDs: ENSMUST00000164243.2, ENSMUST00000218879.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AACATGAACAAGAGACCCTGTTTAAACAGCGTAGAAGGCAGGGACGAGCACCTGTCCTTCTTCCCCGTTTaGAAGAGGGAGAGAAAGTGT | + |
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Preference number: 2 (lower is better) Translates to: NMNKRPCLNSVEGRDEHLSFFPV*KRERKC Trigger: ACACTTTCTCTCCCTCTTGCAAACGGGGAAGAAGGA...CAGGTGCTCGTCCCTGCCTTCTACGCTGTTTAAACAGGGTCTCTTGTTCATGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218879.2 |
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| 3UTR TCA 72 bp | AGCGTAGAAGGCAGGGACGAGCACCTGAGGTTGTCTTaGCTTCAACAATGTGTACCCGAGCATGTAGAAGAA | + |
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Preference number: 3 (lower is better) Translates to: SVEGRDEHLRLS*LQQCVPEHVEE Trigger: TTCTTCTACATGCTCGGGTACACATTGTTGAAGTCAAGACAACCTCAGGTGCTCGTCCCTGCCTTCTACGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218879.2 |
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| 3UTR TCA 72 bp | GCTCTATGGATAAAGGCACTTGGTGCCAAGTGTGACTaGGCTGAGTTTAAACCCTGGACCCACATGGTGAAA | + |
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Preference number: 3 (lower is better) Translates to: ALWIKALGAKCD*AEFKPWTHMVK Trigger: TTTCACCATGTGGGTCCAGGGTTTAAACTCAGCTCAGTCACACTTGGCACCAAGTGCCTTTATCCATAGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218879.2 |
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| 3UTR TCA 72 bp | TCCTTCCTTCCTCTCTTTCTTTGGAACTGTGGCCAATaGCATGGCTCTATGGATAAAGGCACTTGGTGCCAA | + |
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Preference number: 3 (lower is better) Translates to: SFLPLFLWNCGQ*HGSMDKGTWCQ Trigger: TTGGCACCAAGTGCCTTTATCCATAGAGCCATGTCATTGGCCACAGTTCCAAAGAAAGAGAGGAAGGAAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218879.2 |
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| 3UTR TCA 72 bp | GAGATTCCAGGACAGACACACAGCAATAGTTATCAATaGACCAACCAATGCTGCTACGGCCTTATTTTTAAT | + |
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Preference number: 3 (lower is better) Translates to: EIPGQTHSNSYQ*TNQCCYGLIFN Trigger: ATTAAAAATAAGGCCGTAGCAGCATTGGTTGGTTCATTGATAACTATTGCTGTGTGTCTGTCCTGGAATCTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000218879.2 |
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| CDS-3UTR TCA 90 bp | AACATGAACAAGAGACCCTGTTTAAACAGCGTAGAAGGCAGGGACGAGCACCTGTCCCTGGATGCTTACTaGAAACCTTGGCACCATCTG | + |
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Preference number: 4 (lower is better) Translates to: NMNKRPCLNSVEGRDEHLSLDAY*KPWHHL Trigger: CAGATGGTGCCAAGGTTTTCAGTAAGCATCCAGGGA...CAGGTGCTCGTCCCTGCCTTCTACGCTGTTTAAACAGGGTCTCTTGTTCATGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | AAAACGGTGAGACAAAAGAACGAAGGCAAGACAGGCAAGAATATCCTTCTTCCCTTTTGTGGCAGCAACTaGACTAAGAGCACCGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: KTVRQKNEGKTGKNILLPFCGSN*TKSTAS Trigger: GGAGGCGGTGCTCTTAGTGCAGTTGCTGCCACAAAA...GGGAAGAAGGATATTCTTGCCTGTCTTGCCTTCGTTCTTTTGTCTCACCGTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | GAAGGGAAGGGAGACAAGGAAAACGGTGAGACAAAAGAACGAAGGCAAGACAGGCTTGCCATTGACTCCTaGTCATTCCCTTTGCTCATA | + |
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Preference number: 4 (lower is better) Translates to: EGKGDKENGETKERRQDRLAIDS*SFPLLI Trigger: TATGAGCAAAGGGAATGAGCAGGAGTCAATGGCAAG...CCTGTCTTGCCTTCGTTCTTTTGTCTCACCGTTTTCCTTGTCTCCCTTCCCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR TCA 90 bp | AGACAAAAGAACGAAGGCAAGACAGGCAAGAATATCCTTCTTCCCCGTTTGCAATCCCTGGATGCTTACTaGAAACCTTGGCACCATCTG | + |
|
Preference number: 4 (lower is better) Translates to: RQKNEGKTGKNILLPRLQSLDAY*KPWHHL Trigger: CAGATGGTGCCAAGGTTTTCAGTAAGCATCCAGGGA...TTGCAAACGGGGAAGAAGGATATTCTTGCCTGTCTTGCCTTCGTTCTTTTGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | GAAGGGAAGGGAGACAAGGAAAACGGTGAGACAAAAGAACGAAGGCAAGACAGGTTTGTTCAGTCCAGATaGCATCTCTTCAAGATCAAT | + |
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Preference number: 4 (lower is better) Translates to: EGKGDKENGETKERRQDRFVQSR*HLFKIN Trigger: ATTGATCTTGAAGAGATGGCATCTGGACTGAACAAA...CCTGTCTTGCCTTCGTTCTTTTGTCTCACCGTTTTCCTTGTCTCCCTTCCCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | AACATGAACAAGAGACCCTGTTTAAACAGCGTAGAAGGCAGGGACGAGCACCTGTTTGTTCAGTCCAGATaGCATCTCTTCAAGATCAAT | + |
|
Preference number: 4 (lower is better) Translates to: NMNKRPCLNSVEGRDEHLFVQSR*HLFKIN Trigger: ATTGATCTTGAAGAGATGGCATCTGGACTGAACAAA...CAGGTGCTCGTCCCTGCCTTCTACGCTGTTTAAACAGGGTCTCTTGTTCATGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | GAAGGGAAGGGAGACAAGGAAAACGGTGAGACAAAAGAACGAAGGCAAGACAGGATAGAACGGAATTCTTaGTTTGGTGGCATTCTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: EGKGDKENGETKERRQDRIERNS*FGGILF Trigger: AAACAGAATGCCACCAAAGCAAGAATTCCGTTCTAT...CCTGTCTTGCCTTCGTTCTTTTGTCTCACCGTTTTCCTTGTCTCCCTTCCCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | AAATGTACCTGCTGGCTTTTTGCCTATTTTCTGGGTGGTACGCTGCCACATCAAAGCCTGTCCGATGGATaGATCCATCACATAAACAAT | + |
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Preference number: 4 (lower is better) Translates to: KCTCWLFAYFLGGTLPHQSLSDG*IHHINN Trigger: ATTGTTTATGTGATGGATGCATCCATCGGACAGGCT...TTGATGTGGCAGCGTACCACCCAGAAAATAGGCAAAAAGCCAGCAGGTACATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR TCA 90 bp | AAATGTACCTGCTGGCTTTTTGCCTATTTTCTGGGTGGTACGCTGCCACATCAATGGGTCAGAAGTTCTTaGATATCTCTTGTTGACACA | + |
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Preference number: 4 (lower is better) Translates to: KCTCWLFAYFLGGTLPHQWVRSS*ISLVDT Trigger: TGTGTCAACAAGAGATATTCAAGAACTTCTGACCCA...TTGATGTGGCAGCGTACCACCCAGAAAATAGGCAAAAAGCCAGCAGGTACATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR TCA 90 bp | ACTTCAGAAGGGAAGGGAGACAAGGAAAACGGTGAGACAAAAGAACGAAGGCAATGGGTCAGAAGTTCTTaGATATCTCTTGTTGACACA | + |
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Preference number: 4 (lower is better) Translates to: TSEGKGDKENGETKERRQWVRSS*ISLVDT Trigger: TGTGTCAACAAGAGATATTCAAGAACTTCTGACCCA...TTGCCTTCGTTCTTTTGTCTCACCGTTTTCCTTGTCTCCCTTCCCTTCTGAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | TCAGAAGGGAAGGGAGACAAGGAAAACGGTGAGACAAAAGAACGAAGGCAAGACATAGAACGGAATTCTTaGTTTGGTGGCATTCTGTTT | + |
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Preference number: 4 (lower is better) Translates to: SEGKGDKENGETKERRQDIERNS*FGGILF Trigger: AAACAGAATGCCACCAAAGCAAGAATTCCGTTCTAT...GTCTTGCCTTCGTTCTTTTGTCTCACCGTTTTCCTTGTCTCCCTTCCCTTCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | TCAGAAGGGAAGGGAGACAAGGAAAACGGTGAGACAAAAGAACGAAGGCAAGACCCACTTCTCTATAAGTaGCTTGTTATCATCCAACTT | + |
|
Preference number: 4 (lower is better) Translates to: SEGKGDKENGETKERRQDPLLYK*LVIIQL Trigger: AAGTTGGATGATAACAAGGCACTTATAGAGAAGTGG...GTCTTGCCTTCGTTCTTTTGTCTCACCGTTTTCCTTGTCTCCCTTCCCTTCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | TATTTTCTGGGTGGTACGCTGCCACATCAAACCTTAAAGAAAGTTAACGAACCCCTTGCCATTGACTCCTaGTCATTCCCTTTGCTCATA | + |
|
Preference number: 4 (lower is better) Translates to: YFLGGTLPHQTLKKVNEPLAIDS*SFPLLI Trigger: TATGAGCAAAGGGAATGAGCAGGAGTCAATGGCAAG...GGGTTCGTTAACTTTCTTTAAGGTTTGATGTGGCAGCGTACCACCCAGAAAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | ACTTCAGAAGGGAAGGGAGACAAGGAAAACGGTGAGACAAAAGAACGAAGGCAACTTTTTGACCATCTGTaGAAACTTGGTATACTGGGT | + |
|
Preference number: 4 (lower is better) Translates to: TSEGKGDKENGETKERRQLFDHL*KLGILG Trigger: ACCCAGTATACCAAGTTTGCACAGATGGTCAAAAAG...TTGCCTTCGTTCTTTTGTCTCACCGTTTTCCTTGTCTCCCTTCCCTTCTGAAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR CCA 90 bp | ACTTCAGAAGGGAAGGGAGACAAGGAAAACGGTGAGACAAAAGAACGAAGGCAATCTTTGGATTCTCCCTaGATGCTTACTGAAAACCTT | + |
|
Preference number: 4 (lower is better) Translates to: TSEGKGDKENGETKERRQSLDSP*MLTENL Trigger: AAGGTTTTCAGTAAGCATCCAGGGAGAATCCAAAGA...TTGCCTTCGTTCTTTTGTCTCACCGTTTTCCTTGTCTCCCTTCCCTTCTGAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | AAAACGGTGAGACAAAAGAACGAAGGCAAGACAGGCAAGAATATCCTTCTTCCCAACATGATCACATTTTaGTTTCCCTTAGTCGGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: KTVRQKNEGKTGKNILLPNMITF*FPLVGV Trigger: GACACCGACTAAGGGAAAGCAAAATGTGATCATGTT...GGGAAGAAGGATATTCTTGCCTGTCTTGCCTTCGTTCTTTTGTCTCACCGTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | AGACAAAAGAACGAAGGCAAGACAGGCAAGAATATCCTTCTTCCCCGTTTGCAAGTTTTACCACTCCCTTaGAATCCAACAAACATGATC | + |
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Preference number: 4 (lower is better) Translates to: RQKNEGKTGKNILLPRLQVLPLP*NPTNMI Trigger: GATCATGTTTGTTGGATTGCAAGGGAGTGGTAAAAC...TTGCAAACGGGGAAGAAGGATATTCTTGCCTGTCTTGCCTTCGTTCTTTTGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | ATATATATTCCTTTAAATGTACCTGCTGGCTTTTTGCCTATTTTCTGGGTGGTATTTTGTGGCAGCAACTaGACTAAGAGCACCGCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: IYIPLNVPAGFLPIFWVVFCGSN*TKSTAS Trigger: GGAGGCGGTGCTCTTAGTGCAGTTGCTGCCACAAAA...TACCACCCAGAAAATAGGCAAAAAGCCAGCAGGTACATTTAAAGGAATATATAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | AGACAAAAGAACGAAGGCAAGACAGGCAAGAATATCCTTCTTCCCCGTTTGCAACTTTTTGACCATCTGTaGAAACTTGGTATACTGGGT | + |
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Preference number: 4 (lower is better) Translates to: RQKNEGKTGKNILLPRLQLFDHL*KLGILG Trigger: ACCCAGTATACCAAGTTTGCACAGATGGTCAAAAAG...TTGCAAACGGGGAAGAAGGATATTCTTGCCTGTCTTGCCTTCGTTCTTTTGTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR CCA 90 bp | AAAACGGTGAGACAAAAGAACGAAGGCAAGACAGGCAAGAATATCCTTCTTCCCTCTTTGGATTCTCCCTaGATGCTTACTGAAAACCTT | + |
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Preference number: 4 (lower is better) Translates to: KTVRQKNEGKTGKNILLPSLDSP*MLTENL Trigger: AAGGTTTTCAGTAAGCATCCAGGGAGAATCCAAAGA...GGGAAGAAGGATATTCTTGCCTGTCTTGCCTTCGTTCTTTTGTCTCACCGTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | TATTTTCTGGGTGGTACGCTGCCACATCAAACCTTAAAGAAAGTTAACGAACCCAACATGATCACATTTTaGTTTCCCTTAGTCGGTGTC | + |
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Preference number: 4 (lower is better) Translates to: YFLGGTLPHQTLKKVNEPNMITF*FPLVGV Trigger: GACACCGACTAAGGGAAAGCAAAATGTGATCATGTT...GGGTTCGTTAACTTTCTTTAAGGTTTGATGTGGCAGCGTACCACCCAGAAAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | AGACAAAAGAACGAAGGCAAGACAGGCAAGAATATCCTTCTTCCCCGTTTGCAATGCTCTGAATGTATCTaGACATATCAAACAGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: RQKNEGKTGKNILLPRLQCSECI*TYQTGL Trigger: AAGACCTGTTTGATATGTGCAGATACATTCAGAGCA...TTGCAAACGGGGAAGAAGGATATTCTTGCCTGTCTTGCCTTCGTTCTTTTGTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | ATATATATTCCTTTAAATGTACCTGCTGGCTTTTTGCCTATTTTCTGGGTGGTAAGCCTGTCCGATGGATaGATCCATCACATAAACAAT | + |
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Preference number: 4 (lower is better) Translates to: IYIPLNVPAGFLPIFWVVSLSDG*IHHINN Trigger: ATTGTTTATGTGATGGATGCATCCATCGGACAGGCT...TACCACCCAGAAAATAGGCAAAAAGCCAGCAGGTACATTTAAAGGAATATATAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | ATATATATTCCTTTAAATGTACCTGCTGGCTTTTTGCCTATTTTCTGGGTGGTATGCTCTGAATGTATCTaGACATATCAAACAGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: IYIPLNVPAGFLPIFWVVCSECI*TYQTGL Trigger: AAGACCTGTTTGATATGTGCAGATACATTCAGAGCA...TACCACCCAGAAAATAGGCAAAAAGCCAGCAGGTACATTTAAAGGAATATATAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR GCA 90 bp | ATATATATTCCTTTAAATGTACCTGCTGGCTTTTTGCCTATTTTCTGGGTGGTACCACTTCTCTATAAGTaGCTTGTTATCATCCAACTT | + |
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Preference number: 4 (lower is better) Translates to: IYIPLNVPAGFLPIFWVVPLLYK*LVIIQL Trigger: AAGTTGGATGATAACAAGGCACTTATAGAGAAGTGG...TACCACCCAGAAAATAGGCAAAAAGCCAGCAGGTACATTTAAAGGAATATATAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR CAA 90 bp | AACATGAACAAGAGACCCTGTTTAAACAGCGTAGAAGGCAGGGACGAGCACCTGTCCCCGGGCAACTCTTaGGATTCTCCCTGGATGCTT | + |
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Preference number: 5 (lower is better) Translates to: NMNKRPCLNSVEGRDEHLSPGNS*DSPWML Trigger: AAGCATCCAGGGAGAATCCAAAGAGTTGCCCGGGGA...CAGGTGCTCGTCCCTGCCTTCTACGCTGTTTAAACAGGGTCTCTTGTTCATGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218879.2 |
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| CDS TCA 90 bp | CACCTGATCCCCGGGCAACTCTTTGGATTCTCCCTGGATGCTTACTaGAAACCTTGGCACCATCTGTACTGTCCAGTTCTTGATCGTTCA | + |
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Preference number: 5 (lower is better) Translates to: HLIPGQLFGFSLDAY*KPWHHLYCPVLDRS Trigger: TGAACGATCAAGAACTGGACAGTACAGATGGTGCCAAGGTTTTCAGTAAGCATCCAGGGAGAATCCAAAGAGTTGCCCGGGGATCAGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR CAA 90 bp | GAAGGGAAGGGAGACAAGGAAAACGGTGAGACAAAAGAACGAAGGCAAGACAGGCTTGAATATCTCTTGTaGACACACCTGATCCCCGGG | + |
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Preference number: 5 (lower is better) Translates to: EGKGDKENGETKERRQDRLEYLL*THLIPG Trigger: CCCGGGGATCAGGTGTGTCAACAAGAGATATTCAAG...CCTGTCTTGCCTTCGTTCTTTTGTCTCACCGTTTTCCTTGTCTCCCTTCCCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR CAA 90 bp | AGACAAAAGAACGAAGGCAAGACAGGCAAGAATATCCTTCTTCCCCGTTTGCAATCCCCGGGCAACTCTTaGGATTCTCCCTGGATGCTT | + |
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Preference number: 5 (lower is better) Translates to: RQKNEGKTGKNILLPRLQSPGNS*DSPWML Trigger: AAGCATCCAGGGAGAATCCAAAGAGTTGCCCGGGGA...TTGCAAACGGGGAAGAAGGATATTCTTGCCTGTCTTGCCTTCGTTCTTTTGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS-3UTR CAA 90 bp | TCAGAAGGGAAGGGAGACAAGGAAAACGGTGAGACAAAAGAACGAAGGCAAGACCTTGAATATCTCTTGTaGACACACCTGATCCCCGGG | + |
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Preference number: 5 (lower is better) Translates to: SEGKGDKENGETKERRQDLEYLL*THLIPG Trigger: CCCGGGGATCAGGTGTGTCAACAAGAGATATTCAAG...GTCTTGCCTTCGTTCTTTTGTCTCACCGTTTTCCTTGTCTCCCTTCCCTTCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS TCA 90 bp | TTTTTGACCATCTGTGCAAACTTGGTATACTGGGTCAGAAGTTCTTaGATATCTCTTGTTGACACACCTGATCCCCGGGCAACTCTTTGG | + |
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Preference number: 5 (lower is better) Translates to: FLTICANLVYWVRSS*ISLVDTPDPRATLW Trigger: CCAAAGAGTTGCCCGGGGATCAGGTGTGTCAACAAGAGATATTCAAGAACTTCTGACCCAGTATACCAAGTTTGCACAGATGGTCAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS GCA 90 bp | GCCTTTGAAAAGTCCTTTGATACCTCCCATCTTTTTGACCATCTGTaGAAACTTGGTATACTGGGTCAGAAGTTCTTGAATATCTCTTGT | + |
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Preference number: 5 (lower is better) Translates to: AFEKSFDTSHLFDHL*KLGILGQKFLNISC Trigger: ACAAGAGATATTCAAGAACTTCTGACCCAGTATACCAAGTTTGCACAGATGGTCAAAAAGATGGGAGGTATCAAAGGACTTTTCAAAGGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS GCA 90 bp | CATGTCTCGCAATGTAAACTGACCGTGCTTCCACTTCTCTATAAGTaGCTTGTTATCATCCAACTTCAATTCATTGACTTTATCAATCAG | + |
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Preference number: 5 (lower is better) Translates to: HVSQCKLTVLPLLYK*LVIIQLQFIDFINQ Trigger: CTGATTGATAAAGTCAATGAATTGAAGTTGGATGATAACAAGGCACTTATAGAGAAGTGGAAGCACGGTCAGTTTACATTGCGAGACATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS GCA 72 bp | CCTGATCCCCGGGCAACTCTTTGGATTCTCCCTGGATaGTTACTGAAAACCTTGGCACCATCTGTACTGTCC | + |
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Preference number: 6 (lower is better) Translates to: PDPRATLWILPG*LLKTLAPSVLS Trigger: GGACAGTACAGATGGTGCCAAGGTTTTCAGTAAGCATCCAGGGAGAATCCAAAGAGTTGCCCGGGGATCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS CCA 72 bp | GAAGCTACATCTACTTTGTCTTTAAAGGCCTTCGCCTaGGCCTCACAAGCCTGTCCGATGGATGCATCCATC | + |
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Preference number: 6 (lower is better) Translates to: EATSTLSLKAFA*ASQACPMDASI Trigger: GATGGATGCATCCATCGGACAGGCTTGTGAGGCCCAGGCGAAGGCCTTTAAAGACAAAGTAGATGTAGCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS TCA 72 bp | CCCGGGCAACTCTTTGGATTCTCCCTGGATGCTTACTaGAAACCTTGGCACCATCTGTACTGTCCAGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: PGQLFGFSLDAY*KPWHHLYCPVL Trigger: AAGAACTGGACAGTACAGATGGTGCCAAGGTTTTCAGTAAGCATCCAGGGAGAATCCAAAGAGTTGCCCGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS CCA 72 bp | TCTCTTGTTGACACACCTGATCCCCGGGCAACTCTTTaGATTCTCCCTGGATGCTTACTGAAAACCTTGGCA | + |
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Preference number: 6 (lower is better) Translates to: SLVDTPDPRATL*ILPGCLLKTLA Trigger: TGCCAAGGTTTTCAGTAAGCATCCAGGGAGAATCCAAAGAGTTGCCCGGGGATCAGGTGTGTCAACAAGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS CAA 90 bp | GTGCAAACTTGGTATACTGGGTCAGAAGTTCTTGAATATCTCTTGTaGACACACCTGATCCCCGGGCAACTCTTTGGATTCTCCCTGGAT | + |
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Preference number: 6 (lower is better) Translates to: VQTWYTGSEVLEYLL*THLIPGQLFGFSLD Trigger: ATCCAGGGAGAATCCAAAGAGTTGCCCGGGGATCAGGTGTGTCAACAAGAGATATTCAAGAACTTCTGACCCAGTATACCAAGTTTGCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS CAA 90 bp | TCTGTGCAAACTTGGTATACTGGGTCAGAAGTTCTTGAATATCTCTaGTTGACACACCTGATCCCCGGGCAACTCTTTGGATTCTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: SVQTWYTGSEVLEYL*LTHLIPGQLFGFSL Trigger: CAGGGAGAATCCAAAGAGTTGCCCGGGGATCAGGTGTGTCAACAAGAGATATTCAAGAACTTCTGACCCAGTATACCAAGTTTGCACAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS CCA 72 bp | CAGTATAGCTGCCATAGAACGGAATTCTTGCTTTGGTaGCATTCTGTTTTAGCTGGTCAAAGGCTCCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: QYSCHRTEFLLW*HSVLAGQRLLL Trigger: GAGCAGGAGCCTTTGACCAGCTAAAACAGAATGCCACCAAAGCAAGAATTCCGTTCTATGGCAGCTATACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS CAA 72 bp | TGGTATACTGGGTCAGAAGTTCTTGAATATCTCTTGTaGACACACCTGATCCCCGGGCAACTCTTTGGATTC | + |
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Preference number: 6 (lower is better) Translates to: WYTGSEVLEYLL*THLIPGQLFGF Trigger: GAATCCAAAGAGTTGCCCGGGGATCAGGTGTGTCAACAAGAGATATTCAAGAACTTCTGACCCAGTATACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS CCA 72 bp | AACGGAATTCTTGCTTTGGTGGCATTCTGTTTTAGCTaGTCAAAGGCTCCTGCTCTGAATGTATCTGCACAT | + |
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Preference number: 6 (lower is better) Translates to: NGILALVAFCFS*SKAPALNVSAH Trigger: ATGTGCAGATACATTCAGAGCAGGAGCCTTTGACCAGCTAAAACAGAATGCCACCAAAGCAAGAATTCCGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS CCA 72 bp | TTTCAGTATAGCTGCCATAGAACGGAATTCTTGCTTTaGTGGCATTCTGTTTTAGCTGGTCAAAGGCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: FQYSCHRTEFLL*WHSVLAGQRLL Trigger: CAGGAGCCTTTGACCAGCTAAAACAGAATGCCACCAAAGCAAGAATTCCGTTCTATGGCAGCTATACTGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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| CDS GCA 72 bp | AAGTCCTTTGATACCTCCCATCTTTTTGACCATCTGTaGAAACTTGGTATACTGGGTCAGAAGTTCTTGAAT | + |
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Preference number: 6 (lower is better) Translates to: KSFDTSHLFDHL*KLGILGQKFLN Trigger: ATTCAAGAACTTCTGACCCAGTATACCAAGTTTGCACAGATGGTCAAAAAGATGGGAGGTATCAAAGGACTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000164243.2 ENSMUST00000218879.2 |
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