Pregenerated sensors for SRP54B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000112449Ensembl transcript IDs: ENSMUST00000110708.4
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR-3UTR CCA 90 bp | CATCTGAGATTCCAGGACAGACACACAGCAATAGTTATCAATGAACCAACCAATTTTTTGCCTATTTTCTaGGTGGTACGCTGCCACATC | + |
Preference number: 2 (lower is better) Translates to: HLRFQDRHTAIVINEPTNFLPIF*VVRCHI Trigger: GATGTGGCAGCGTACCACCCAGAAAATAGGCAAAAA...ATTGGTTGGTTCATTGATAACTATTGCTGTGTGTCTGTCCTGGAATCTCAGATG 42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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3UTR-3UTR CCA 90 bp | CATCTGAGATTCCAGGACAGACACACAGCAATAGTTATCAATGAACCAACCAATTTTAAATGTACCTGCTaGCTTTTTGCCTATTTTCTG | + |
Preference number: 2 (lower is better) Translates to: HLRFQDRHTAIVINEPTNFKCTC*LFAYFL Trigger: CAGAAAATAGGCAAAAAGCCAGCAGGTACATTTAAA...ATTGGTTGGTTCATTGATAACTATTGCTGTGTGTCTGTCCTGGAATCTCAGATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS-3UTR GCA 90 bp | CATCTGAGATTCCAGGACAGACACACAGCAATAGTTATCAATGAACCAACCAATTGGATTCTCCCTGGTTaGTTACTGAAAACCTTGGCA | + |
Preference number: 4 (lower is better) Translates to: HLRFQDRHTAIVINEPTNWILPG*LLKTLA Trigger: TGCCAAGGTTTTCAGTAAGCAACCAGGGAGAATCCA...ATTGGTTGGTTCATTGATAACTATTGCTGTGTGTCTGTCCTGGAATCTCAGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS-3UTR GCA 90 bp | TGGCTTTTTGCCTATTTTCTGGGTGGTACGCTGCCACATCAAACCTTAAAGAAACAACTTCTCTATAAGTaGCTCATTATCATCCAACTT | + |
Preference number: 4 (lower is better) Translates to: WLFAYFLGGTLPHQTLKKQLLYK*LIIIQL Trigger: AAGTTGGATGATAATGAGGCACTTATAGAGAAGTTG...TTTCTTTAAGGTTTGATGTGGCAGCGTACCACCCAGAAAATAGGCAAAAAGCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS TCA 90 bp | GCCTTTCATGTTGCCAGCAGCACCCTGCTGAAACTGCCGCATCATTaGCTGAAGGCCGGCCATGCCACCCATGTGATGAAGAACTCGTGG | + |
Preference number: 5 (lower is better) Translates to: AFHVASSTLLKLPHH*LKAGHATHVMKNSW Trigger: CCACGAGTTCTTCATCACATGGGTGGCATGGCCGGCCTTCAGTCAATGATGCGGCAGTTTCAGCAGGGTGCTGCTGGCAACATGAAAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS TCA 90 bp | AGCACCGCCTCCTTTCGCATGACCGTCGAGTTTTGTCACTATTACTaGAGCTACATCTACTTTGTCTTTAAAGGCCTTCGCCTGGGCCTC | + |
Preference number: 5 (lower is better) Translates to: STASFRMTVEFCHYY*SYIYFVFKGLRLGL Trigger: GAGGCCCAGGCGAAGGCCTTTAAAGACAAAGTAGATGTAGCTTCAGTAATAGTGACAAAACTCGACGGTCATGCGAAAGGAGGCGGTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS TCA 90 bp | CACCTGATCCCCGGGCAACTCTTTGGATTCTCCCTGGTTGCTTACTaGAAACCTTGGCACCATCTGTACTGTCCAGTTCTTGATCGTTCA | + |
Preference number: 5 (lower is better) Translates to: HLIPGQLFGFSLVAY*KPWHHLYCPVLDRS Trigger: TGAACGATCAAGAACTGGACAGTACAGATGGTGCCAAGGTTTTCAGTAAGCAACCAGGGAGAATCCAAAGAGTTGCCCGGGGATCAGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS TCA 90 bp | CTTTTTGTGGCAGCAACTGCACTAAGAGCACCGCCTCCTTTCGCATaGCCGTCGAGTTTTGTCACTATTACTGAAGCTACATCTACTTTG | + |
Preference number: 5 (lower is better) Translates to: LFVAATALRAPPPFA*PSSFVTITEATSTL Trigger: CAAAGTAGATGTAGCTTCAGTAATAGTGACAAAACTCGACGGTCATGCGAAAGGAGGCGGTGCTCTTAGTGCAGTTGCTGCCACAAAAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS TCA 90 bp | TGGCACCATCTGTACTGTCCAGTTCTTGATCGTTCATACTGTCCATaGTTGTCATCAGTTTCTTCAGCCTTGCCATTGACTCCTGCTCAT | + |
Preference number: 5 (lower is better) Translates to: WHHLYCPVLDRSYCP*LSSVSSALPLTPAH Trigger: ATGAGCAGGAGTCAATGGCAAGGCTGAAGAAACTGATGACAATCATGGACAGTATGAACGATCAAGAACTGGACAGTACAGATGGTGCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS GCA 90 bp | GTCGTTTTACCACTCCCTTGCAATCCAACAAACATGATCACATTTTaGTTTCCCTTAGTCGGTGTCCACGCTTTAACTCCAGGGTCTACA | + |
Preference number: 5 (lower is better) Translates to: VVLPLPCNPTNMITF*FPLVGVHALTPGST Trigger: TGTAGACCCTGGAGTTAAAGCGTGGACACCGACTAAGGGAAAGCAAAATGTGATCATGTTTGTTGGATTGCAAGGGAGTGGTAAAACGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS GCA 90 bp | GTCTTTAAAGGCCTTCGCCTGGGCCTCACAAGCCTGTCCGATGGATaGATCCATCACATAAACAATGTTATCAGGTTGTATAGCATTAGA | + |
Preference number: 5 (lower is better) Translates to: VFKGLRLGLTSLSDG*IHHINNVIRLYSIR Trigger: TCTAATGCTATACAACCTGATAACATTGTTTATGTGATGGATGCATCCATCGGACAGGCTTGTGAGGCCCAGGCGAAGGCCTTTAAAGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS GCA 90 bp | GCCTTTGAAAAGTCCTTTGATACCTCCCATCTTTTTGACCATCTGTaGAAACTTGGTATACTGGGTCAGAAGTTCTTGAACATCTCTTGT | + |
Preference number: 5 (lower is better) Translates to: AFEKSFDTSHLFDHL*KLGILGQKFLNISC Trigger: ACAAGAGATGTTCAAGAACTTCTGACCCAGTATACCAAGTTTGCACAGATGGTCAAAAAGATGGGAGGTATCAAAGGACTTTTCAAAGGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS CAA 72 bp | TGTTGCCAGCAGCACCCTGCTGAAACTGCCGCATCATaGACTGAAGGCCGGCCATGCCACCCATGTGATGAA | + |
Preference number: 6 (lower is better) Translates to: CCQQHPAETAAS*TEGRPCHPCDE Trigger: TTCATCACATGGGTGGCATGGCCGGCCTTCAGTCAATGATGCGGCAGTTTCAGCAGGGTGCTGCTGGCAACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS GCA 72 bp | CCTGATCCCCGGGCAACTCTTTGGATTCTCCCTGGTTaGTTACTGAAAACCTTGGCACCATCTGTACTGTCC | + |
Preference number: 6 (lower is better) Translates to: PDPRATLWILPG*LLKTLAPSVLS Trigger: GGACAGTACAGATGGTGCCAAGGTTTTCAGTAAGCAACCAGGGAGAATCCAAAGAGTTGCCCGGGGATCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS GCA 72 bp | ACCAATGAAAATAATTGGACTTTTTGTGGCAGCAACTaGACTAAGAGCACCGCCTCCTTTCGCATGACCGTC | + |
Preference number: 6 (lower is better) Translates to: TNENNWTFCGSN*TKSTASFRMTV Trigger: GACGGTCATGCGAAAGGAGGCGGTGCTCTTAGTGCAGTTGCTGCCACAAAAAGTCCAATTATTTTCATTGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS CAA 72 bp | TGGTATACTGGGTCAGAAGTTCTTGAACATCTCTTGTaGACACACCTGATCCCCGGGCAACTCTTTGGATTC | + |
Preference number: 6 (lower is better) Translates to: WYTGSEVLEHLL*THLIPGQLFGF Trigger: GAATCCAAAGAGTTGCCCGGGGATCAGGTGTGTCAACAAGAGATGTTCAAGAACTTCTGACCCAGTATACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS CAA 72 bp | ACTTGGTATACTGGGTCAGAAGTTCTTGAACATCTCTaGTTGACACACCTGATCCCCGGGCAACTCTTTGGA | + |
Preference number: 6 (lower is better) Translates to: TWYTGSEVLEHL*LTHLIPGQLFG Trigger: TCCAAAGAGTTGCCCGGGGATCAGGTGTGTCAACAAGAGATGTTCAAGAACTTCTGACCCAGTATACCAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS GCA 72 bp | CCACTCCCTTGCAATCCAACAAACATGATCACATTTTaGTTTCCCTTAGTCGGTGTCCACGCTTTAACTCCA | + |
Preference number: 6 (lower is better) Translates to: PLPCNPTNMITF*FPLVGVHALTP Trigger: TGGAGTTAAAGCGTGGACACCGACTAAGGGAAAGCAAAATGTGATCATGTTTGTTGGATTGCAAGGGAGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS CAA 72 bp | TCGAGTTTTGTCACTATTACTGAAGCTACATCTACTTaGTCTTTAAAGGCCTTCGCCTGGGCCTCACAAGCC | + |
Preference number: 6 (lower is better) Translates to: SSFVTITEATST*SLKAFAWASQA Trigger: GGCTTGTGAGGCCCAGGCGAAGGCCTTTAAAGACAAAGTAGATGTAGCTTCAGTAATAGTGACAAAACTCGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS GCA 72 bp | AAGTCCTTTGATACCTCCCATCTTTTTGACCATCTGTaGAAACTTGGTATACTGGGTCAGAAGTTCTTGAAC | + |
Preference number: 6 (lower is better) Translates to: KSFDTSHLFDHL*KLGILGQKFLN Trigger: GTTCAAGAACTTCTGACCCAGTATACCAAGTTTGCACAGATGGTCAAAAAGATGGGAGGTATCAAAGGACTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS GCA 72 bp | GCTAACTTTGAACATGTTGTCGTTTTACCACTCCCTTaGAATCCAACAAACATGATCACATTTTGCTTTCCC | + |
Preference number: 6 (lower is better) Translates to: ANFEHVVVLPLP*NPTNMITFCFP Trigger: GGGAAAGCAAAATGTGATCATGTTTGTTGGATTGCAAGGGAGTGGTAAAACGACAACATGTTCAAAGTTAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |
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CDS CAA 72 bp | ACATTCTTAGACATATCACCGCCTTTGAAAAGTCCTTaGATACCTCCCATCTTTTTGACCATCTGTGCAAAC | + |
Preference number: 6 (lower is better) Translates to: TFLDISPPLKSP*IPPIFLTICAN Trigger: GTTTGCACAGATGGTCAAAAAGATGGGAGGTATCAAAGGACTTTTCAAAGGCGGTGATATGTCTAAGAATGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110708.4 |