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Pregenerated sensors for SRP54B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000112449

Ensembl transcript IDs: ENSMUST00000110708.4

Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp CATCTGAGATTCCAGGACAGACACACAGCAATAGTTATCAATGAACCAACCAATTTTTTGCCTATTTTCTaGGTGGTACGCTGCCACATC +
Preference number: 2 (lower is better)
Translates to: HLRFQDRHTAIVINEPTNFLPIF*VVRCHI
Trigger: GATGTGGCAGCGTACCACCCAGAAAATAGGCAAAAA...ATTGGTTGGTTCATTGATAACTATTGCTGTGTGTCTGTCCTGGAATCTCAGATG
42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
3UTR-3UTR CCA 90 bp CATCTGAGATTCCAGGACAGACACACAGCAATAGTTATCAATGAACCAACCAATTTTAAATGTACCTGCTaGCTTTTTGCCTATTTTCTG +
Preference number: 2 (lower is better)
Translates to: HLRFQDRHTAIVINEPTNFKCTC*LFAYFL
Trigger: CAGAAAATAGGCAAAAAGCCAGCAGGTACATTTAAA...ATTGGTTGGTTCATTGATAACTATTGCTGTGTGTCTGTCCTGGAATCTCAGATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS-3UTR GCA 90 bp CATCTGAGATTCCAGGACAGACACACAGCAATAGTTATCAATGAACCAACCAATTGGATTCTCCCTGGTTaGTTACTGAAAACCTTGGCA +
Preference number: 4 (lower is better)
Translates to: HLRFQDRHTAIVINEPTNWILPG*LLKTLA
Trigger: TGCCAAGGTTTTCAGTAAGCAACCAGGGAGAATCCA...ATTGGTTGGTTCATTGATAACTATTGCTGTGTGTCTGTCCTGGAATCTCAGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS-3UTR GCA 90 bp TGGCTTTTTGCCTATTTTCTGGGTGGTACGCTGCCACATCAAACCTTAAAGAAACAACTTCTCTATAAGTaGCTCATTATCATCCAACTT +
Preference number: 4 (lower is better)
Translates to: WLFAYFLGGTLPHQTLKKQLLYK*LIIIQL
Trigger: AAGTTGGATGATAATGAGGCACTTATAGAGAAGTTG...TTTCTTTAAGGTTTGATGTGGCAGCGTACCACCCAGAAAATAGGCAAAAAGCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS TCA 90 bp GCCTTTCATGTTGCCAGCAGCACCCTGCTGAAACTGCCGCATCATTaGCTGAAGGCCGGCCATGCCACCCATGTGATGAAGAACTCGTGG +
Preference number: 5 (lower is better)
Translates to: AFHVASSTLLKLPHH*LKAGHATHVMKNSW
Trigger: CCACGAGTTCTTCATCACATGGGTGGCATGGCCGGCCTTCAGTCAATGATGCGGCAGTTTCAGCAGGGTGCTGCTGGCAACATGAAAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS TCA 90 bp AGCACCGCCTCCTTTCGCATGACCGTCGAGTTTTGTCACTATTACTaGAGCTACATCTACTTTGTCTTTAAAGGCCTTCGCCTGGGCCTC +
Preference number: 5 (lower is better)
Translates to: STASFRMTVEFCHYY*SYIYFVFKGLRLGL
Trigger: GAGGCCCAGGCGAAGGCCTTTAAAGACAAAGTAGATGTAGCTTCAGTAATAGTGACAAAACTCGACGGTCATGCGAAAGGAGGCGGTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS TCA 90 bp CACCTGATCCCCGGGCAACTCTTTGGATTCTCCCTGGTTGCTTACTaGAAACCTTGGCACCATCTGTACTGTCCAGTTCTTGATCGTTCA +
Preference number: 5 (lower is better)
Translates to: HLIPGQLFGFSLVAY*KPWHHLYCPVLDRS
Trigger: TGAACGATCAAGAACTGGACAGTACAGATGGTGCCAAGGTTTTCAGTAAGCAACCAGGGAGAATCCAAAGAGTTGCCCGGGGATCAGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS TCA 90 bp CTTTTTGTGGCAGCAACTGCACTAAGAGCACCGCCTCCTTTCGCATaGCCGTCGAGTTTTGTCACTATTACTGAAGCTACATCTACTTTG +
Preference number: 5 (lower is better)
Translates to: LFVAATALRAPPPFA*PSSFVTITEATSTL
Trigger: CAAAGTAGATGTAGCTTCAGTAATAGTGACAAAACTCGACGGTCATGCGAAAGGAGGCGGTGCTCTTAGTGCAGTTGCTGCCACAAAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS TCA 90 bp TGGCACCATCTGTACTGTCCAGTTCTTGATCGTTCATACTGTCCATaGTTGTCATCAGTTTCTTCAGCCTTGCCATTGACTCCTGCTCAT +
Preference number: 5 (lower is better)
Translates to: WHHLYCPVLDRSYCP*LSSVSSALPLTPAH
Trigger: ATGAGCAGGAGTCAATGGCAAGGCTGAAGAAACTGATGACAATCATGGACAGTATGAACGATCAAGAACTGGACAGTACAGATGGTGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS GCA 90 bp GTCGTTTTACCACTCCCTTGCAATCCAACAAACATGATCACATTTTaGTTTCCCTTAGTCGGTGTCCACGCTTTAACTCCAGGGTCTACA +
Preference number: 5 (lower is better)
Translates to: VVLPLPCNPTNMITF*FPLVGVHALTPGST
Trigger: TGTAGACCCTGGAGTTAAAGCGTGGACACCGACTAAGGGAAAGCAAAATGTGATCATGTTTGTTGGATTGCAAGGGAGTGGTAAAACGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS GCA 90 bp GTCTTTAAAGGCCTTCGCCTGGGCCTCACAAGCCTGTCCGATGGATaGATCCATCACATAAACAATGTTATCAGGTTGTATAGCATTAGA +
Preference number: 5 (lower is better)
Translates to: VFKGLRLGLTSLSDG*IHHINNVIRLYSIR
Trigger: TCTAATGCTATACAACCTGATAACATTGTTTATGTGATGGATGCATCCATCGGACAGGCTTGTGAGGCCCAGGCGAAGGCCTTTAAAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS GCA 90 bp GCCTTTGAAAAGTCCTTTGATACCTCCCATCTTTTTGACCATCTGTaGAAACTTGGTATACTGGGTCAGAAGTTCTTGAACATCTCTTGT +
Preference number: 5 (lower is better)
Translates to: AFEKSFDTSHLFDHL*KLGILGQKFLNISC
Trigger: ACAAGAGATGTTCAAGAACTTCTGACCCAGTATACCAAGTTTGCACAGATGGTCAAAAAGATGGGAGGTATCAAAGGACTTTTCAAAGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS CAA 72 bp TGTTGCCAGCAGCACCCTGCTGAAACTGCCGCATCATaGACTGAAGGCCGGCCATGCCACCCATGTGATGAA +
Preference number: 6 (lower is better)
Translates to: CCQQHPAETAAS*TEGRPCHPCDE
Trigger: TTCATCACATGGGTGGCATGGCCGGCCTTCAGTCAATGATGCGGCAGTTTCAGCAGGGTGCTGCTGGCAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS GCA 72 bp CCTGATCCCCGGGCAACTCTTTGGATTCTCCCTGGTTaGTTACTGAAAACCTTGGCACCATCTGTACTGTCC +
Preference number: 6 (lower is better)
Translates to: PDPRATLWILPG*LLKTLAPSVLS
Trigger: GGACAGTACAGATGGTGCCAAGGTTTTCAGTAAGCAACCAGGGAGAATCCAAAGAGTTGCCCGGGGATCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS GCA 72 bp ACCAATGAAAATAATTGGACTTTTTGTGGCAGCAACTaGACTAAGAGCACCGCCTCCTTTCGCATGACCGTC +
Preference number: 6 (lower is better)
Translates to: TNENNWTFCGSN*TKSTASFRMTV
Trigger: GACGGTCATGCGAAAGGAGGCGGTGCTCTTAGTGCAGTTGCTGCCACAAAAAGTCCAATTATTTTCATTGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS CAA 72 bp TGGTATACTGGGTCAGAAGTTCTTGAACATCTCTTGTaGACACACCTGATCCCCGGGCAACTCTTTGGATTC +
Preference number: 6 (lower is better)
Translates to: WYTGSEVLEHLL*THLIPGQLFGF
Trigger: GAATCCAAAGAGTTGCCCGGGGATCAGGTGTGTCAACAAGAGATGTTCAAGAACTTCTGACCCAGTATACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS CAA 72 bp ACTTGGTATACTGGGTCAGAAGTTCTTGAACATCTCTaGTTGACACACCTGATCCCCGGGCAACTCTTTGGA +
Preference number: 6 (lower is better)
Translates to: TWYTGSEVLEHL*LTHLIPGQLFG
Trigger: TCCAAAGAGTTGCCCGGGGATCAGGTGTGTCAACAAGAGATGTTCAAGAACTTCTGACCCAGTATACCAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS GCA 72 bp CCACTCCCTTGCAATCCAACAAACATGATCACATTTTaGTTTCCCTTAGTCGGTGTCCACGCTTTAACTCCA +
Preference number: 6 (lower is better)
Translates to: PLPCNPTNMITF*FPLVGVHALTP
Trigger: TGGAGTTAAAGCGTGGACACCGACTAAGGGAAAGCAAAATGTGATCATGTTTGTTGGATTGCAAGGGAGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS CAA 72 bp TCGAGTTTTGTCACTATTACTGAAGCTACATCTACTTaGTCTTTAAAGGCCTTCGCCTGGGCCTCACAAGCC +
Preference number: 6 (lower is better)
Translates to: SSFVTITEATST*SLKAFAWASQA
Trigger: GGCTTGTGAGGCCCAGGCGAAGGCCTTTAAAGACAAAGTAGATGTAGCTTCAGTAATAGTGACAAAACTCGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS GCA 72 bp AAGTCCTTTGATACCTCCCATCTTTTTGACCATCTGTaGAAACTTGGTATACTGGGTCAGAAGTTCTTGAAC +
Preference number: 6 (lower is better)
Translates to: KSFDTSHLFDHL*KLGILGQKFLN
Trigger: GTTCAAGAACTTCTGACCCAGTATACCAAGTTTGCACAGATGGTCAAAAAGATGGGAGGTATCAAAGGACTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS GCA 72 bp GCTAACTTTGAACATGTTGTCGTTTTACCACTCCCTTaGAATCCAACAAACATGATCACATTTTGCTTTCCC +
Preference number: 6 (lower is better)
Translates to: ANFEHVVVLPLP*NPTNMITFCFP
Trigger: GGGAAAGCAAAATGTGATCATGTTTGTTGGATTGCAAGGGAGTGGTAAAACGACAACATGTTCAAAGTTAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4
CDS CAA 72 bp ACATTCTTAGACATATCACCGCCTTTGAAAAGTCCTTaGATACCTCCCATCTTTTTGACCATCTGTGCAAAC +
Preference number: 6 (lower is better)
Translates to: TFLDISPPLKSP*IPPIFLTICAN
Trigger: GTTTGCACAGATGGTCAAAAAGATGGGAGGTATCAAAGGACTTTTCAAAGGCGGTGATATGTCTAAGAATGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110708.4