Pregenerated sensors for SRP54A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073079Ensembl transcript IDs: ENSMUST00000021407.11, ENSMUST00000220578.2, ENSMUST00000221655.2, ENSMUST00000222027.2
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | CATAGCTTCTGCTGGAAGTCTAGACAAGAACACAGAAGGAAGCGTTaGCTCCTAGCCTGCTTGTCCTTCACCTTGCTAACACGTCCATTC | + |
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Preference number: 2 (lower is better) Translates to: HSFCWKSRQEHRRKR*LLACLSFTLLTRPF Trigger: GAATGGACGTGTTAGCAAGGTGAAGGACAAGCAGGCTAGGAGCAAACGCTTCCTTCTGTGTTCTTGTCTAGACTTCCAGCAGAAGCTATG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| 3UTR CAA 90 bp | CTGTTTAAACAGCGTAGAAGGCAGGGACGAGCACCTGAGGTTGTCTaGACTTCAACAATGTGTACCCGAGCATGTAGAAGAATGCACTCA | + |
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Preference number: 2 (lower is better) Translates to: LFKQRRRQGRAPEVV*TSTMCTRACRRMHS Trigger: TGAGTGCATTCTTCTACATGCTCGGGTACACATTGTTGAAGTCAAGACAACCTCAGGTGCTCGTCCCTGCCTTCTACGCTGTTTAAACAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| 3UTR CAA 90 bp | GAACACAGAAGGAAGCGTTTGCTCCTAGCCTGCTTGTCCTTCACCTaGCTAACACGTCCATTCTTTCACTGGCATCAAAGCCTACTTATT | + |
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Preference number: 2 (lower is better) Translates to: EHRRKRLLLACLSFT*LTRPFFHWHQSLLI Trigger: AATAAGTAGGCTTTGATGCCAGTGAAAGAATGGACGTGTTAGCAAGGTGAAGGACAAGCAGGCTAGGAGCAAACGCTTCCTTCTGTGTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| 3UTR-3UTR GCA 90 bp | CCAGACATAAAAATATCAAAACTCATGCAGAAGGCATTCGGGATGCTATGTCCACATGCCCAGCTGAACTaGATTCTTTATGAGAATACT | + |
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Preference number: 2 (lower is better) Translates to: PDIKISKLMQKAFGMLCPHAQLN*ILYENT Trigger: AGTATTCTCATAAAGAATGCAGTTCAGCTGGGCATG...TGGACATAGCATCCCGAATGCCTTCTGCATGAGTTTTGATATTTTTATGTCTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| 3UTR-3UTR CAA 90 bp | TCAGCACTCAGGAGGCAGAGGAAGGCGGAGCTCTGTGAGTTTGAGGCCAGCCTGATCCTTCTTCCCCGTTaGCAAGAGGGAGAGAAAGTG | + |
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Preference number: 3 (lower is better) Translates to: SALRRQRKAELCEFEASLILLPR*QEGEKV Trigger: CACTTTCTCTCCCTCTTGCAAACGGGGAAGAAGGAT...CAGGCTGGCCTCAAACTCACAGAGCTCCGCCTTCCTCTGCCTCCTGAGTGCTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| 3UTR GCA 72 bp | AAGGCAAGACAGGCAAGAATATCCTTCTTCCCCGTTTaGAAGAGGGAGAGAAAGTGTGAGGTCTCAGCAGAT | + |
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Preference number: 3 (lower is better) Translates to: KARQARISFFPV*KRERKCEVSAD Trigger: ATCTGCTGAGACCTCACACTTTCTCTCCCTCTTGCAAACGGGGAAGAAGGATATTCTTGCCTGTCTTGCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| 3UTR-3UTR CAA 90 bp | TGCTTGTCCTTCACCTTGCTAACACGTCCATTCTTTCACTGGCATCAAAGCCTACCTTCCTCTCTTTCTTaGGAACTGTGGCCAATGACA | + |
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Preference number: 3 (lower is better) Translates to: CLSFTLLTRPFFHWHQSLPSSLS*ELWPMT Trigger: TGTCATTGGCCACAGTTCCAAAGAAAGAGAGGAAGG...TAGGCTTTGATGCCAGTGAAAGAATGGACGTGTTAGCAAGGTGAAGGACAAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| 3UTR-3UTR CAA 90 bp | ATGAGAACTGACTTCTGCAAGTTGTCCTCTGAAACCCAACATGTCACTTGTGCTATGACATCATCCACCTaGTCAGTTCCTAGTAAGGGG | + |
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Preference number: 3 (lower is better) Translates to: MRTDFCKLSSETQHVTCAMTSST*SVPSKG Trigger: CCCCTTACTAGGAACTGACAAGGTGGATGATGTCAT...AGCACAAGTGACATGTTGGGTTTCAGAGGACAACTTGCAGAAGTCAGTTCTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| 3UTR TCA 72 bp | TATAGATACCAGATGAGCCATCCAGCCTCGCAGGACTaGTCAACTACTGAGTCATTCCATAGTTCTGTGACT | + |
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Preference number: 3 (lower is better) Translates to: YRYQMSHPASQD*STTESFHSSVT Trigger: AGTCACAGAACTATGGAATGACTCAGTAGTTGATCAGTCCTGCGAGGCTGGATGGCTCATCTGGTATCTATA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| 3UTR CCA 72 bp | TTGTCCTTCACCTTGCTAACACGTCCATTCTTTCACTaGCATCAAAGCCTACTTATTTGGGATTCCAGTATA | + |
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Preference number: 3 (lower is better) Translates to: LSFTLLTRPFFH*HQSLLIWDSSI Trigger: TATACTGGAATCCCAAATAAGTAGGCTTTGATGCCAGTGAAAGAATGGACGTGTTAGCAAGGTGAAGGACAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CCA 90 bp | GCAAGAGGGAGAGAAAGTGTGAGGTCTCAGCAGATGACATCATCCACCTTGTCATTAAAGGCCTTCGCCTaGGCCTCACAAGCCTGTCCG | + |
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Preference number: 4 (lower is better) Translates to: ARGRESVRSQQMTSSTLSLKAFA*ASQACP Trigger: CGGACAGGCTTGTGAGGCCCAGGCGAAGGCCTTTAA...TGACAAGGTGGATGATGTCATCTGCTGAGACCTCACACTTTCTCTCCCTCTTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR TCA 90 bp | TTCTTTGGAACTGTGGCCAATGACATGGCTCTATGGATAAAGGCACTTGGTGCCCCAGCAGCACCCTGCTaGAACTGCCGCATCATTGAC | + |
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Preference number: 4 (lower is better) Translates to: FFGTVANDMALWIKALGAPAAPC*NCRIID Trigger: GTCAATGATGCGGCAGTTTCAGCAGGGTGCTGCTGG...GGCACCAAGTGCCTTTATCCATAGAGCCATGTCATTGGCCACAGTTCCAAAGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR TCA 90 bp | CACGTCCATTCTTTCACTGGCATCAAAGCCTACTTATTTGGGATTCCAGTATATTGCCGCATCATTGACTaGAGGCCGGCCATGCCACCC | + |
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Preference number: 4 (lower is better) Translates to: HVHSFTGIKAYLFGIPVYCRIID*RPAMPP Trigger: GGGTGGCATGGCCGGCCTTCAGTCAATGATGCGGCA...ATATACTGGAATCCCAAATAAGTAGGCTTTGATGCCAGTGAAAGAATGGACGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| 3UTR CAA 72 bp | AGGAAGCGTTTGCTCCTAGCCTGCTTGTCCTTCACCTaGCTAACACGTCCATTCTTTCACTGGCATCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: RKRLLLACLSFT*LTRPFFHWHQS Trigger: GCTTTGATGCCAGTGAAAGAATGGACGTGTTAGCAAGGTGAAGGACAAGCAGGCTAGGAGCAAACGCTTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR TCA 90 bp | CAGGAGATTTGTCATGAGTTCCAGGACAGCCTGAGCCTTTCTCCCCAAACCAAAGAGTCTTCTTGTTTGTaGCGACCACTTGTATCAACA | + |
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Preference number: 4 (lower is better) Translates to: QEICHEFQDSLSLSPQTKESSCL*RPLVST Trigger: TGTTGATACAAGTGGTCGTCACAAACAAGAAGACTC...TTTGGTTTGGGGAGAAAGGCTCAGGCTGTCCTGGAACTCATGACAAATCTCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR TCA 90 bp | CATGAACAAGAGACCCTGTTTAAACAGCGTAGAAGGCAGGGACGAGCACCTGAGCGTTCATACTGTCCATaGTTGTCATCAGTTTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: HEQETLFKQRRRQGRAPERSYCP*LSSVSS Trigger: TGAAGAAACTGATGACAATCATGGACAGTATGAACG...CTCAGGTGCTCGTCCCTGCCTTCTACGCTGTTTAAACAGGGTCTCTTGTTCATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR TCA 90 bp | CAATGTGTACCCGAGCATGTAGAAGAATGCACTCAAAACCACTCATACACACAGTCCCTGGTTGCTTACTaGAAACCTTGGCACCATCTG | + |
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Preference number: 4 (lower is better) Translates to: QCVPEHVEECTQNHSYTQSLVAY*KPWHHL Trigger: CAGATGGTGCCAAGGTTTTCAGTAAGCAACCAGGGA...CTGTGTGTATGAGTGGTTTTGAGTGCATTCTTCTACATGCTCGGGTACACATTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR TCA 90 bp | CCAGCTAGCCCAGCTCTCTGGAACATGAACAAGAGACCCTGTTTAAACAGCGTAGCAATCCAACAAACATaGTCACATTTTGCTTTCCCT | + |
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Preference number: 4 (lower is better) Translates to: PASPALWNMNKRPCLNSVAIQQT*SHFAFP Trigger: AGGGAAAGCAAAATGTGATCATGTTTGTTGGATTGC...TACGCTGTTTAAACAGGGTCTCTTGTTCATGTTCCAGAGAGCTGGGCTAGCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR TCA 90 bp | TCTCTAGTTTTGGATTTCTATAACTGTACCTTACTAGGCCACTCTGGCAAAACACCGCCTCCTTTCGCATaGCCGTCGAGTTTTGTCACT | + |
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Preference number: 4 (lower is better) Translates to: SLVLDFYNCTLLGHSGKTPPPFA*PSSFVT Trigger: AGTGACAAAACTCGACGGTCATGCGAAAGGAGGCGG...TGTTTTGCCAGAGTGGCCTAGTAAGGTACAGTTATAGAAATCCAAAACTAGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CCA 90 bp | ATGAGAACTGACTTCTGCAAGTTGTCCTCTGAAACCCAACATGTCACTTGTGCTGCATTCTGTTTTAGCTaGTCAAAGGCTCCTGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: MRTDFCKLSSETQHVTCAAFCFS*SKAPAL Trigger: CAGAGCAGGAGCCTTTGACCAGCTAAAACAGAATGC...AGCACAAGTGACATGTTGGGTTTCAGAGGACAACTTGCAGAAGTCAGTTCTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR TCA 90 bp | ACTGACTTCTGCAAGTTGTCCTCTGAAACCCAACATGTCACTTGTGCTTTTAATCTTCAGCCTTGCCATTaGCTCCTGCTCATTCCCTTT | + |
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Preference number: 4 (lower is better) Translates to: TDFCKLSSETQHVTCAFNLQPCH*LLLIPF Trigger: AAAGGGAATGAGCAGGAGTCAATGGCAAGGCTGAAG...ATTAAAAGCACAAGTGACATGTTGGGTTTCAGAGGACAACTTGCAGAAGTCAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR TCA 90 bp | TGTGCTATGGTGCAAGTGCTAACACATCCAACCGTCACTGGAATTGAAGCTTACTGGGTCAGAAGTTCTTaGACATCTCTTGTTGACACA | + |
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Preference number: 4 (lower is better) Translates to: CAMVQVLTHPTVTGIEAYWVRSS*TSLVDT Trigger: TGTGTCAACAAGAGATGTTCAAGAACTTCTGACCCA...GTAAGCTTCAATTCCAGTGACGGTTGGATGTGTTAGCACTTGCACCATAGCACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CCA 90 bp | CAATGTGTACCCGAGCATGTAGAAGAATGCACTCAAAACCACTCATACACACAGCACAAGCCTGTCCGATaGATGCATCCATCACATAAA | + |
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Preference number: 4 (lower is better) Translates to: QCVPEHVEECTQNHSYTQHKPVR*MHPSHK Trigger: TTTATGTGATGGATGCATCCATCGGACAGGCTTGTG...CTGTGTGTATGAGTGGTTTTGAGTGCATTCTTCTACATGCTCGGGTACACATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CCA 90 bp | TGCTTGTCCTTCACCTTGCTAACACGTCCATTCTTTCACTGGCATCAAAGCCTATCTTTGGATTCTCCCTaGTTGCTTACTGAAAACCTT | + |
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Preference number: 4 (lower is better) Translates to: CLSFTLLTRPFFHWHQSLSLDSP*LLTENL Trigger: AAGGTTTTCAGTAAGCAACCAGGGAGAATCCAAAGA...TAGGCTTTGATGCCAGTGAAAGAATGGACGTGTTAGCAAGGTGAAGGACAAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CCA 90 bp | ATGAGAACTGACTTCTGCAAGTTGTCCTCTGAAACCCAACATGTCACTTGTGCTCCATCTGTGCAAACTTaGTATACTGGGTCAGAAGTT | + |
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Preference number: 4 (lower is better) Translates to: MRTDFCKLSSETQHVTCAPSVQT*YTGSEV Trigger: AACTTCTGACCCAGTATACCAAGTTTGCACAGATGG...AGCACAAGTGACATGTTGGGTTTCAGAGGACAACTTGCAGAAGTCAGTTCTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR TCA 90 bp | TCTCTAGTTTTGGATTTCTATAACTGTACCTTACTAGGCCACTCTGGCAAAACAATCATCCCCAATATCTaGCTGAATGGGCCCATTTTC | + |
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Preference number: 4 (lower is better) Translates to: SLVLDFYNCTLLGHSGKTIIPNI*LNGPIF Trigger: GAAAATGGGCCCATTCAGTCAGATATTGGGGATGAT...TGTTTTGCCAGAGTGGCCTAGTAAGGTACAGTTATAGAAATCCAAAACTAGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CCA 90 bp | ACTGACTTCTGCAAGTTGTCCTCTGAAACCCAACATGTCACTTGTGCTTTTAATACGGAATTCTTGCTTTaGTGGCATTCTGTTTTAGCT | + |
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Preference number: 4 (lower is better) Translates to: TDFCKLSSETQHVTCAFNTEFLL*WHSVLA Trigger: AGCTAAAACAGAATGCCACCAAAGCAAGAATTCCGT...ATTAAAAGCACAAGTGACATGTTGGGTTTCAGAGGACAACTTGCAGAAGTCAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CCA 90 bp | AGTTCAACCAGACATAAAAATATCAAAACTCATGCAGAAGGCATTCGGGATGCTGAATTCTTGCTTTGGTaGCATTCTGTTTTAGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: SSTRHKNIKTHAEGIRDAEFLLW*HSVLAG Trigger: ACCAGCTAAAACAGAATGCCACCAAAGCAAGAATTC...AGCATCCCGAATGCCTTCTGCATGAGTTTTGATATTTTTATGTCTGGTTGAACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | TCAGCACTCAGGAGGCAGAGGAAGGCGGAGCTCTGTGAGTTTGAGGCCAGCCTGACCATCTGTGCAAACTaGGTATACTGGGTCAGAAGT | + |
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Preference number: 5 (lower is better) Translates to: SALRRQRKAELCEFEASLTICAN*VYWVRS Trigger: ACTTCTGACCCAGTATACCAAGTTTGCACAGATGGT...CAGGCTGGCCTCAAACTCACAGAGCTCCGCCTTCCTCTGCCTCCTGAGTGCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | TCAGCACTCAGGAGGCAGAGGAAGGCGGAGCTCTGTGAGTTTGAGGCCAGCCTGAACGGAATTCTTGCTTaGGTGGCATTCTGTTTTAGC | + |
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Preference number: 5 (lower is better) Translates to: SALRRQRKAELCEFEASLNGILA*VAFCFS Trigger: GCTAAAACAGAATGCCACCAAAGCAAGAATTCCGTT...CAGGCTGGCCTCAAACTCACAGAGCTCCGCCTTCCTCTGCCTCCTGAGTGCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | TCAGCACTCAGGAGGCAGAGGAAGGCGGAGCTCTGTGAGTTTGAGGCCAGCCTGCTAACTTTGAACATGTaGTCGTTTTACCACTCCCTT | + |
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Preference number: 5 (lower is better) Translates to: SALRRQRKAELCEFEASLLTLNM*SFYHSL Trigger: AAGGGAGTGGTAAAACGACAACATGTTCAAAGTTAG...CAGGCTGGCCTCAAACTCACAGAGCTCCGCCTTCCTCTGCCTCCTGAGTGCTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | TGCTTGTCCTTCACCTTGCTAACACGTCCATTCTTTCACTGGCATCAAAGCCTATCCCCGGGCAACTCTTaGGATTCTCCCTGGTTGCTT | + |
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Preference number: 5 (lower is better) Translates to: CLSFTLLTRPFFHWHQSLSPGNS*DSPWLL Trigger: AAGCAACCAGGGAGAATCCAAAGAGTTGCCCGGGGA...TAGGCTTTGATGCCAGTGAAAGAATGGACGTGTTAGCAAGGTGAAGGACAAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | CCTTTAAATGTACCTGCTGGCTTTTTGCCTATTTTCTGGGTGGTACGCTGCCACCTTGAACATCTCTTGTaGACACACCTGATCCCCGGG | + |
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Preference number: 5 (lower is better) Translates to: PLNVPAGFLPIFWVVRCHLEHLL*THLIPG Trigger: CCCGGGGATCAGGTGTGTCAACAAGAGATGTTCAAG...GTGGCAGCGTACCACCCAGAAAATAGGCAAAAAGCCAGCAGGTACATTTAAAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | CCGTGTGGCACCTGTAGTGATCAGAAGACGGCATCAGATCCTCTGGAACCGGAGTTTAATACCTCTTCATaGATAATGGTGGCATTGCTC | + |
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Preference number: 5 (lower is better) Translates to: PCGTCSDQKTASDPLEPEFNTSS*IMVALL Trigger: GAGCAATGCCACCATTATCAATGAAGAGGTATTAAA...CTCCGGTTCCAGAGGATCTGATGCCGTCTTCTGATCACTACAGGTGCCACACGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222027.2 |
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| CDS-3UTR CAA 90 bp | TGTGGCACCTGTAGTGATCAGAAGACGGCATCAGATCCTCTGGAACCGGAGTTATTGATAATGGTGGCATaGCTCAATGAGCGTAATGCT | + |
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Preference number: 5 (lower is better) Translates to: CGTCSDQKTASDPLEPELLIMVA*LNERNA Trigger: AGCATTACGCTCATTGAGCAATGCCACCATTATCAA...TAACTCCGGTTCCAGAGGATCTGATGCCGTCTTCTGATCACTACAGGTGCCACA 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222027.2 |
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| CDS-3UTR CAA 90 bp | AACAAGAGACCCTGTTTAAACAGCGTAGAAGGCAGGGACGAGCACCTGAGGTTGCATAGAACGGAATTCTaGCTTTGGTGGCATTCTGTT | + |
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Preference number: 5 (lower is better) Translates to: NKRPCLNSVEGRDEHLRLHRTEF*LWWHSV Trigger: AACAGAATGCCACCAAAGCAAGAATTCCGTTCTATG...CAACCTCAGGTGCTCGTCCCTGCCTTCTACGCTGTTTAAACAGGGTCTCTTGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | TTCTTCCCCGTTTGCAAGAGGGAGAGAAAGTGTGAGGTCTCAGCAGATGACATCGAAGCTACATCTACTTaGTCTTTAAAGGCCTTCGCC | + |
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Preference number: 5 (lower is better) Translates to: FFPVCKRERKCEVSADDIEATST*SLKAFA Trigger: GGCGAAGGCCTTTAAAGACAAAGTAGATGTAGCTTC...GATGTCATCTGCTGAGACCTCACACTTTCTCTCCCTCTTGCAAACGGGGAAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | GCAAGAGGGAGAGAAAGTGTGAGGTCTCAGCAGATGACATCATCCACCTTGTCATTGATAATGGTGGCATaGCTCAATGAGCGTAATGCT | + |
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Preference number: 5 (lower is better) Translates to: ARGRESVRSQQMTSSTLSLIMVA*LNERNA Trigger: AGCATTACGCTCATTGAGCAATGCCACCATTATCAA...TGACAAGGTGGATGATGTCATCTGCTGAGACCTCACACTTTCTCTCCCTCTTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | GCAAGAGGGAGAGAAAGTGTGAGGTCTCAGCAGATGACATCATCCACCTTGTCACATGACCGTCGAGTTTaGTCACTATTACTGAAGCTA | + |
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Preference number: 5 (lower is better) Translates to: ARGRESVRSQQMTSSTLSHDRRV*SLLLKL Trigger: TAGCTTCAGTAATAGTGACAAAACTCGACGGTCATG...TGACAAGGTGGATGATGTCATCTGCTGAGACCTCACACTTTCTCTCCCTCTTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | TGTGCTATGGTGCAAGTGCTAACACATCCAACCGTCACTGGAATTGAAGCTTACTCAGTTTCTTCAGCCTaGCCATTGACTCCTGCTCAT | + |
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Preference number: 5 (lower is better) Translates to: CAMVQVLTHPTVTGIEAYSVSSA*PLTPAH Trigger: ATGAGCAGGAGTCAATGGCAAGGCTGAAGAAACTGA...GTAAGCTTCAATTCCAGTGACGGTTGGATGTGTTAGCACTTGCACCATAGCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | GCAAGAGGGAGAGAAAGTGTGAGGTCTCAGCAGATGACATCATCCACCTTGTCACCTTTGAAAAGTCCTTaGATACCTCCCATCTTTTTG | + |
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Preference number: 5 (lower is better) Translates to: ARGRESVRSQQMTSSTLSPLKSP*IPPIFL Trigger: CAAAAAGATGGGAGGTATCAAAGGACTTTTCAAAGG...TGACAAGGTGGATGATGTCATCTGCTGAGACCTCACACTTTCTCTCCCTCTTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | CCTTTAAATGTACCTGCTGGCTTTTTGCCTATTTTCTGGGTGGTACGCTGCCACCGTGGGTCCATCATTTaGGCCATTTGTTGGTTTAAT | + |
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Preference number: 5 (lower is better) Translates to: PLNVPAGFLPIFWVVRCHRGSII*AICWFN Trigger: ATTAAACCAACAAATGGCCAAAATGATGGACCCACG...GTGGCAGCGTACCACCCAGAAAATAGGCAAAAAGCCAGCAGGTACATTTAAAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | ACCAGACATAAAAATATCAAAACTCATGCAGAAGGCATTCGGGATGCTATGTCCTCTTCAGCCTTGCCATaGACTCCTGCTCATTCCCTT | + |
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Preference number: 5 (lower is better) Translates to: TRHKNIKTHAEGIRDAMSSSALP*TPAHSL Trigger: AAGGGAATGAGCAGGAGTCAATGGCAAGGCTGAAGA...GGACATAGCATCCCGAATGCCTTCTGCATGAGTTTTGATATTTTTATGTCTGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | ATGGACCATAGCTTCTGCTGGAAGTCTAGACAAGAACACAGAAGGAAGCGTTTGGACATATCACCGCCTTaGAAAAGTCCTTTGATACCT | + |
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Preference number: 5 (lower is better) Translates to: MDHSFCWKSRQEHRRKRLDISPP*KSPLIP Trigger: AGGTATCAAAGGACTTTTCAAAGGCGGTGATATGTC...CAAACGCTTCCTTCTGTGTTCTTGTCTAGACTTCCAGCAGAAGCTATGGTCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | CACGTCCATTCTTTCACTGGCATCAAAGCCTACTTATTTGGGATTCCAGTATATTGCTTACTGAAAACCTaGGCACCATCTGTACTGTCC | + |
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Preference number: 5 (lower is better) Translates to: HVHSFTGIKAYLFGIPVYCLLKT*APSVLS Trigger: GGACAGTACAGATGGTGCCAAGGTTTTCAGTAAGCA...ATATACTGGAATCCCAAATAAGTAGGCTTTGATGCCAGTGAAAGAATGGACGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | ATGAGAACTGACTTCTGCAAGTTGTCCTCTGAAACCCAACATGTCACTTGTGCTTTTGTTGGTTTAATTTaGCCATCTGTGACTGACTCA | + |
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Preference number: 5 (lower is better) Translates to: MRTDFCKLSSETQHVTCAFVGLI*PSVTDS Trigger: TGAGTCAGTCACAGATGGCAAAATTAAACCAACAAA...AGCACAAGTGACATGTTGGGTTTCAGAGGACAACTTGCAGAAGTCAGTTCTCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | CACGTCCATTCTTTCACTGGCATCAAAGCCTACTTATTTGGGATTCCAGTATATAAACATGATCACATTTaGCTTTCCCTTAGTCGGTGT | + |
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Preference number: 5 (lower is better) Translates to: HVHSFTGIKAYLFGIPVYKHDHI*LSLSRC Trigger: ACACCGACTAAGGGAAAGCAAAATGTGATCATGTTT...ATATACTGGAATCCCAAATAAGTAGGCTTTGATGCCAGTGAAAGAATGGACGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | AGTTCAACCAGACATAAAAATATCAAAACTCATGCAGAAGGCATTCGGGATGCTCGTTTTACCACTCCCTaGCAATCCAACAAACATGAT | + |
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Preference number: 5 (lower is better) Translates to: SSTRHKNIKTHAEGIRDARFTTP*QSNKHD Trigger: ATCATGTTTGTTGGATTGCAAGGGAGTGGTAAAACG...AGCATCCCGAATGCCTTCTGCATGAGTTTTGATATTTTTATGTCTGGTTGAACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS-3UTR CAA 90 bp | CCAGACATAAAAATATCAAAACTCATGCAGAAGGCATTCGGGATGCTATGTCCATTTAATACCTCTTCATaGATAATGGTGGCATTGCTC | + |
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Preference number: 5 (lower is better) Translates to: PDIKISKLMQKAFGMLCPFNTSS*IMVALL Trigger: GAGCAATGCCACCATTATCAATGAAGAGGTATTAAA...TGGACATAGCATCCCGAATGCCTTCTGCATGAGTTTTGATATTTTTATGTCTGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000220578.2 |
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| CDS TCA 72 bp | GTTGCCAGCAGCACCCTGCTGAAACTGCCGCATCATTaGCTGAAGGCCGGCCATGCCACCCATGTGATGAAG | + |
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Preference number: 6 (lower is better) Translates to: VASSTLLKLPHH*LKAGHATHVMK Trigger: CTTCATCACATGGGTGGCATGGCCGGCCTTCAGTCAATGATGCGGCAGTTTCAGCAGGGTGCTGCTGGCAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021407.11 ENSMUST00000220578.2 |
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| CDS CAA 90 bp | TGCCTTTCATGTTGCCAGCAGCACCCTGCTGAAACTGCCGCATCATaGACTGAAGGCCGGCCATGCCACCCATGTGATGAAGAACTCGTG | + |
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Preference number: 6 (lower is better) Translates to: CLSCCQQHPAETAAS*TEGRPCHPCDEELV Trigger: CACGAGTTCTTCATCACATGGGTGGCATGGCCGGCCTTCAGTCAATGATGCGGCAGTTTCAGCAGGGTGCTGCTGGCAACATGAAAGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021407.11 ENSMUST00000220578.2 |
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| CDS TCA 72 bp | GCAGCAACTGCACTAAGAGCACCGCCTCCTTTCGCATaGCCGTCGAGTTTTGTCACTATTACTGAAGCTACA | + |
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Preference number: 6 (lower is better) Translates to: AATALRAPPPFA*PSSFVTITEAT Trigger: TGTAGCTTCAGTAATAGTGACAAAACTCGACGGTCATGCGAAAGGAGGCGGTGCTCTTAGTGCAGTTGCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021407.11 ENSMUST00000220578.2 |
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| CDS TCA 72 bp | CCCGGGCAACTCTTTGGATTCTCCCTGGTTGCTTACTaGAAACCTTGGCACCATCTGTACTGTCCAGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: PGQLFGFSLVAY*KPWHHLYCPVL Trigger: AAGAACTGGACAGTACAGATGGTGCCAAGGTTTTCAGTAAGCAACCAGGGAGAATCCAAAGAGTTGCCCGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021407.11 ENSMUST00000220578.2 |
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| CDS CCA 72 bp | TCTCTTGTTGACACACCTGATCCCCGGGCAACTCTTTaGATTCTCCCTGGTTGCTTACTGAAAACCTTGGCA | + |
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Preference number: 6 (lower is better) Translates to: SLVDTPDPRATL*ILPGCLLKTLA Trigger: TGCCAAGGTTTTCAGTAAGCAACCAGGGAGAATCCAAAGAGTTGCCCGGGGATCAGGTGTGTCAACAAGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021407.11 ENSMUST00000220578.2 |
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| CDS CAA 90 bp | GTGCAAACTTGGTATACTGGGTCAGAAGTTCTTGAACATCTCTTGTaGACACACCTGATCCCCGGGCAACTCTTTGGATTCTCCCTGGTT | + |
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Preference number: 6 (lower is better) Translates to: VQTWYTGSEVLEHLL*THLIPGQLFGFSLV Trigger: AACCAGGGAGAATCCAAAGAGTTGCCCGGGGATCAGGTGTGTCAACAAGAGATGTTCAAGAACTTCTGACCCAGTATACCAAGTTTGCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021407.11 ENSMUST00000220578.2 |
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| CDS CAA 90 bp | TCTGTGCAAACTTGGTATACTGGGTCAGAAGTTCTTGAACATCTCTaGTTGACACACCTGATCCCCGGGCAACTCTTTGGATTCTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: SVQTWYTGSEVLEHL*LTHLIPGQLFGFSL Trigger: CAGGGAGAATCCAAAGAGTTGCCCGGGGATCAGGTGTGTCAACAAGAGATGTTCAAGAACTTCTGACCCAGTATACCAAGTTTGCACAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021407.11 ENSMUST00000220578.2 |
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| CDS CAA 90 bp | TGTCGTTTTACCACTCCCTTGCAATCCAACAAACATGATCACATTTaGCTTTCCCTTAGTCGGTGTCCACGCTTTAACTCCAGGGTCTAC | + |
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Preference number: 6 (lower is better) Translates to: CRFTTPLQSNKHDHI*LSLSRCPRFNSRVY Trigger: GTAGACCCTGGAGTTAAAGCGTGGACACCGACTAAGGGAAAGCAAAATGTGATCATGTTTGTTGGATTGCAAGGGAGTGGTAAAACGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021407.11 ENSMUST00000220578.2 |
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| CDS TCA 72 bp | TCCTTTCGCATGACCGTCGAGTTTTGTCACTATTACTaGAGCTACATCTACTTTGTCTTTAAAGGCCTTCGC | + |
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Preference number: 6 (lower is better) Translates to: SFRMTVEFCHYY*SYIYFVFKGLR Trigger: GCGAAGGCCTTTAAAGACAAAGTAGATGTAGCTTCAGTAATAGTGACAAAACTCGACGGTCATGCGAAAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021407.11 ENSMUST00000220578.2 |
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| CDS TCA 72 bp | CTGTACTGTCCAGTTCTTGATCGTTCATACTGTCCATaGTTGTCATCAGTTTCTTCAGCCTTGCCATTGACT | + |
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Preference number: 6 (lower is better) Translates to: LYCPVLDRSYCP*LSSVSSALPLT Trigger: AGTCAATGGCAAGGCTGAAGAAACTGATGACAATCATGGACAGTATGAACGATCAAGAACTGGACAGTACAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021407.11 ENSMUST00000220578.2 |
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| CDS CAA 90 bp | TCAATATCACCCATTCCAAGGAGTTTGCTGATGAAAGGTTGTGTTTaGAAAGGTTCAAAATCATCTATATGTTCCCCTGTACCAATGAAA | + |
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Preference number: 6 (lower is better) Translates to: SISPIPRSLLMKGCV*KGSKSSICSPVPMK Trigger: TTTCATTGGTACAGGGGAACATATAGATGATTTTGAACCTTTCAAAACACAACCTTTCATCAGCAAACTCCTTGGAATGGGTGATATTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021407.11 ENSMUST00000220578.2 |
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| CDS CAA 90 bp | TCTTTCAGCATAGCATTTAATACCTCTTCATTGATAATGGTGGCATaGCTCAATGAGCGTAATGCTGATGTTATTTTTCTTCCAAGATCT | + |
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Preference number: 6 (lower is better) Translates to: SFSIAFNTSSLIMVA*LNERNADVIFLPRS Trigger: AGATCTTGGAAGAAAAATAACATCAGCATTACGCTCATTGAGCAATGCCACCATTATCAATGAAGAGGTATTAAATGCTATGCTGAAAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021407.11 ENSMUST00000220578.2 ENSMUST00000221655.2 |
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