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Pregenerated sensors for SRP19 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000014504

Ensembl transcript IDs: ENSMUST00000072576.10, ENSMUST00000119329.8, ENSMUST00000142010.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCACCTAAACTACTCTCCAAGGGCGGGGCGGAGGGCGGGGAGTGTTaGTTAGTGACAGAGAACTTGCTCAGCCTATTGGAGGCTTCGAAT +
Preference number: 1 (lower is better)
Translates to: APKLLSKGGAEGGEC*LVTENLLSLLEASN
Trigger: ATTCGAAGCCTCCAATAGGCTGAGCAAGTTCTCTGTCACTAAGCAACACTCCCCGCCCTCCGCCCCGCCCTTGGAGAGTAGTTTAGGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142010.2
3UTR GCA 90 bp TGTTCTCTCAGACACAAGGATGCCATGTCTCTCCCAGCAGGACTGTaGTCCACGTTCACACCACGTCATTTCTTCTTCTTTCCTTTCCCT +
Preference number: 1 (lower is better)
Translates to: CSLRHKDAMSLPAGL*STFTPRHFFFFPFP
Trigger: AGGGAAAGGAAAGAAGAAGAAATGACGTGGTGTGAACGTGGAGCACAGTCCTGCTGGGAGAGACATGGCATCCTTGTGTCTGAGAGAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142010.2
3UTR-3UTR GCA 90 bp CTCTGGAGTACATTTTGTTTTTCTCCAGAAAGGCATTCAGTCCAACTGCTGAGCGAGGGCGGGGAGTGTTaGTTAGTGACAGAGAACTTG +
Preference number: 2 (lower is better)
Translates to: LWSTFCFSPERHSVQLLSEGGEC*LVTENL
Trigger: CAAGTTCTCTGTCACTAAGCAACACTCCCCGCCCTC...GCTCAGCAGTTGGACTGAATGCCTTTCTGGAGAAAAACAAAATGTACTCCAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000142010.2
3UTR CAA 90 bp AGACTTGGGTCGGCACCTCCTGATTTCTGTGTCCGTGTTTTTAGCTaGGGTATCATTTCTGCTACATATAGCATCACTGACTTACGTGAC +
Preference number: 2 (lower is better)
Translates to: RLGSAPPDFCVRVFS*GIISATYSITDLRD
Trigger: GTCACGTAAGTCAGTGATGCTATATGTAGCAGAAATGATACCCAAGCTAAAAACACGGACACAGAAATCAGGAGGTGCCGACCCAAGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142010.2
3UTR-3UTR CAA 90 bp CCATGTCTCTCCCAGCAGGACTGTGCTCCACGTTCACACCACGTCATTTCTTCTTTAGTGACAGAGAACTaGCTCAGCCTATTGGAGGCT +
Preference number: 3 (lower is better)
Translates to: PCLSQQDCAPRSHHVISSLVTEN*LSLLEA
Trigger: AGCCTCCAATAGGCTGAGCAAGTTCTCTGTCACTAA...AGAAGAAATGACGTGGTGTGAACGTGGAGCACAGTCCTGCTGGGAGAGACATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142010.2
3UTR GCA 72 bp ATGACAAACAAAAAGCTGTTCTCTCAGACACAAGGATaGCATGTCTCTCCCAGCAGGACTGTGCTCCACGTT +
Preference number: 3 (lower is better)
Translates to: MTNKKLFSQTQG*HVSPSRTVLHV
Trigger: AACGTGGAGCACAGTCCTGCTGGGAGAGACATGGCATCCTTGTGTCTGAGAGAACAGCTTTTTGTTTGTCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000072576.10
ENSMUST00000119329.8
ENSMUST00000142010.2
3UTR-3UTR CAA 90 bp TGTCTCTCCCAGCAGGACTGTGCTCCACGTTCACACCACGTCATTTCTTCTTCTGAAGATGGAGACAACTaGTTCACAGCTCAGTTAAAT +
Preference number: 3 (lower is better)
Translates to: CLSQQDCAPRSHHVISSSEDGDN*FTAQLN
Trigger: ATTTAACTGAGCTGTGAACAAGTTGTCTCCATCTTC...AGAAGAAGAAATGACGTGGTGTGAACGTGGAGCACAGTCCTGCTGGGAGAGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142010.2
CDS-3UTR TCA 90 bp CAGACACAAGGATGCCATGTCTCTCCCAGCAGGACTGTGCTCCACGTTCACACCCTCCCCTCTCCTTGCTaGAGACTTGGGTCGGCACCT +
Preference number: 4 (lower is better)
Translates to: QTQGCHVSPSRTVLHVHTLPSPC*RLGSAP
Trigger: AGGTGCCGACCCAAGTCTTCAGCAAGGAGAGGGGAG...GGTGTGAACGTGGAGCACAGTCCTGCTGGGAGAGACATGGCATCCTTGTGTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072576.10
ENSMUST00000119329.8
CDS-3UTR TCA 90 bp CAGTTAAATGACAAACAAAAAGCTGTTCTCTCAGACACAAGGATGCCATGTCTCCTCCCCTCTCCTTGCTaGAGACTTGGGTCGGCACCT +
Preference number: 4 (lower is better)
Translates to: QLNDKQKAVLSDTRMPCLLPSPC*RLGSAP
Trigger: AGGTGCCGACCCAAGTCTTCAGCAAGGAGAGGGGAG...GAGACATGGCATCCTTGTGTCTGAGAGAACAGCTTTTTGTTTGTCATTTAACTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072576.10
ENSMUST00000119329.8
CDS-3UTR TCA 90 bp GCTCAGTTAAATGACAAACAAAAAGCTGTTCTCTCAGACACAAGGATGCCATGTTGCCATCTTCCTGTTTaGGCTGTACCCGGACTCTGC +
Preference number: 4 (lower is better)
Translates to: AQLNDKQKAVLSDTRMPCCHLPV*AVPGLC
Trigger: GCAGAGTCCGGGTACAGCTCAAACAGGAAGATGGCA...ACATGGCATCCTTGTGTCTGAGAGAACAGCTTTTTGTTTGTCATTTAACTGAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072576.10
ENSMUST00000119329.8
3UTR CAA 72 bp TCGGCACCTCCTGATTTCTGTGTCCGTGTTTTTAGCTaGGGTATCATTTCTGCTACATATAGCATCACTGAC +
Preference number: 4 (lower is better)
Translates to: SAPPDFCVRVFS*GIISATYSITD
Trigger: GTCAGTGATGCTATATGTAGCAGAAATGATACCCAAGCTAAAAACACGGACACAGAAATCAGGAGGTGCCGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142010.2