Pregenerated sensors for SRP14 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000009549Ensembl transcript IDs: ENSMUST00000009693.15, ENSMUST00000110862.2
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | ATCAAAAACTGGCGTCTTACCACAACTAGCCCAAGCCCATCCCAGTCCTTCTCTGGAAAAATGCACTTGTaGAGCTGGTTGGTAGCAGCC | + |
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Preference number: 2 (lower is better) Translates to: IKNWRLTTTSPSPSQSFSGKMHL*SWLVAA Trigger: GGCTGCTACCAACCAGCTGCACAAGTGCATTTTTCC...AGAGAAGGACTGGGATGGGCTTGGGCTAGTTGTGGTAAGACGCCAGTTTTTGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000009693.15 |
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| 3UTR-3UTR TCA 90 bp | AAAAACTGGCGTCTTACCACAACTAGCCCAAGCCCATCCCAGTCCTTCTCTCTTTACATACAGAGGTGCTaGAAGCAGCAAACAGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: KNWRLTTTSPSPSQSFSLYIQRC*KQQTEE Trigger: TTCCTCTGTTTGCTGCTTTCAGCACCTCTGTATGTA...AAGAGAGAAGGACTGGGATGGGCTTGGGCTAGTTGTGGTAAGACGCCAGTTTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009693.15 |
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| 3UTR-3UTR TCA 90 bp | AACCATCACTGTCATCTGTCTCAGTTGATGAGACACTCCTGTGACACCAGCACGAGTTCAAAGTCAGCCTaGGTAGACTGCAAGACACTA | + |
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Preference number: 2 (lower is better) Translates to: NHHCHLSQLMRHSCDTSTSSKSA*VDCKTL Trigger: TAGTGTCTTGCAGTCTACTCAGGCTGACTTTGAACT...CGTGCTGGTGTCACAGGAGTGTCTCATCAACTGAGACAGATGACAGTGATGGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110862.2 |
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| 3UTR TCA 72 bp | CAGTTGATGAGACACTCCTGTGACACCAGCACGGGCTaGAGCGCCTGGTGTGAGCTTCCTAAATCACAAGTT | + |
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Preference number: 3 (lower is better) Translates to: QLMRHSCDTSTG*SAWCELPKSQV Trigger: AACTTGTGATTTAGGAAGCTCACACCAGGCGCTTCAGCCCGTGCTGGTGTCACAGGAGTGTCTCATCAACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110862.2 |
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| 3UTR TCA 72 bp | GGACCCTTCCGTGGAAACAGTTACATACAGAGGTGCTaGAAGCAGCAAACAGAGGAAAAATGCACTTGTGCA | + |
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Preference number: 3 (lower is better) Translates to: GPFRGNSYIQRC*KQQTEEKCTCA Trigger: TGCACAAGTGCATTTTTCCTCTGTTTGCTGCTTTCAGCACCTCTGTATGTAACTGTTTCCACGGAAGGGTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009693.15 |
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| CDS-3UTR TCA 90 bp | AAAAACTGGCGTCTTACCACAACTAGCCCAAGCCCATCCCAGTCCTTCTCTCTTAGCTCACCACGGTGCTaGTCTTCCTTTTCCCATCCG | + |
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Preference number: 4 (lower is better) Translates to: KNWRLTTTSPSPSQSFSLSSPRC*SSFSHP Trigger: CGGATGGGAAAAGGAAGATCAGCACCGTGGTGAGCT...AAGAGAGAAGGACTGGGATGGGCTTGGGCTAGTTGTGGTAAGACGCCAGTTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009693.15 |
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| CDS-3UTR TCA 90 bp | GACCCTGGCTTGGGTCACATCTCCAACTTCACAAAAACCATCACTGTCATCTGTAAAACTGACTTTTTCTaGGTCGGCCAGGCCAACTCA | + |
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Preference number: 4 (lower is better) Translates to: DPGLGHISNFTKTITVICKTDFF*VGQANS Trigger: TGAGTTGGCCTGGCCGACTCAGAAAAAGTCAGTTTT...ACAGATGACAGTGATGGTTTTTGTGAAGTTGGAGATGTGACCCAAGCCAGGGTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000110862.2 |
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| CDS-3UTR TCA 90 bp | AACCATCACTGTCATCTGTCTCAGTTGATGAGACACTCCTGTGACACCAGCACGTACTTGAGAGAAAACTaGCTTTTTCTGAGTCGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: NHHCHLSQLMRHSCDTSTYLREN*LFLSRP Trigger: TGGCCGACTCAGAAAAAGTCAGTTTTCTCTCAAGTA...CGTGCTGGTGTCACAGGAGTGTCTCATCAACTGAGACAGATGACAGTGATGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110862.2 |
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| CDS-3UTR TCA 90 bp | TTCCTAAATCACAAGTTCAAAGTCAGCCTGAGTAGACTGCAAGACACTATTTTAAGCTCACCACGGTGCTaGTCTTCCTTTTCCCATCCG | + |
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Preference number: 4 (lower is better) Translates to: FLNHKFKVSLSRLQDTILSSPRC*SSFSHP Trigger: CGGATGGGAAAAGGAAGATCAGCACCGTGGTGAGCT...TAAAATAGTGTCTTGCAGTCTACTCAGGCTGACTTTGAACTTGTGATTTAGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110862.2 |
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| CDS-3UTR CAA 90 bp | ATCAAAAACTGGCGTCTTACCACAACTAGCCCAAGCCCATCCCAGTCCTTCTCTGCTCTCAACAGACACTaGTTTTCTGCGGGCTCGAGG | + |
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Preference number: 5 (lower is better) Translates to: IKNWRLTTTSPSPSQSFSALNRH*FSAGSR Trigger: CCTCGAGCCCGCAGAAAACAAGTGTCTGTTGAGAGC...AGAGAAGGACTGGGATGGGCTTGGGCTAGTTGTGGTAAGACGCCAGTTTTTGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009693.15 |
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| CDS-3UTR CAA 90 bp | ATCAAAAACTGGCGTCTTACCACAACTAGCCCAAGCCCATCCCAGTCCTTCTCTTTCAGCCCGTCCATGTaGGCTCTCAGTAGATTTGAA | + |
|
Preference number: 5 (lower is better) Translates to: IKNWRLTTTSPSPSQSFSFSPSM*ALSRFE Trigger: TTCAAATCTACTGAGAGCCAACATGGACGGGCTGAA...AGAGAAGGACTGGGATGGGCTTGGGCTAGTTGTGGTAAGACGCCAGTTTTTGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009693.15 |
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| CDS-3UTR CAA 90 bp | ACATACAGAGGTGCTGAAAGCAGCAAACAGAGGAAAAATGCACTTGTGCAGCTGCGACCGTCATATTTCTaGAGGGTGATGAACACGCTG | + |
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Preference number: 5 (lower is better) Translates to: TYRGAESSKQRKNALVQLRPSYF*RVMNTL Trigger: CAGCGTGTTCATCACCCTCAAGAAATATGACGGTCG...CAGCTGCACAAGTGCATTTTTCCTCTGTTTGCTGCTTTCAGCACCTCTGTATGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009693.15 |
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| CDS-3UTR CAA 90 bp | GCTTGGGTCACATCTCCAACTTCACAAAAACCATCACTGTCATCTGTCTCAGTTCGACCGTCATATTTCTaGAGGGTGATGAACACGCTG | + |
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Preference number: 5 (lower is better) Translates to: AWVTSPTSQKPSLSSVSVRPSYF*RVMNTL Trigger: CAGCGTGTTCATCACCCTCAAGAAATATGACGGTCG...AACTGAGACAGATGACAGTGATGGTTTTTGTGAAGTTGGAGATGTGACCCAAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110862.2 |
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| CDS-3UTR CAA 90 bp | AGCTTCCTAAATCACAAGTTCAAAGTCAGCCTGAGTAGACTGCAAGACACTATTGCTCTCAACAGACACTaGTTTTCTGCGGGCTCGAGG | + |
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Preference number: 5 (lower is better) Translates to: SFLNHKFKVSLSRLQDTIALNRH*FSAGSR Trigger: CCTCGAGCCCGCAGAAAACAAGTGTCTGTTGAGAGC...AATAGTGTCTTGCAGTCTACTCAGGCTGACTTTGAACTTGTGATTTAGGAAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110862.2 |
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| CDS TCA 72 bp | AGAGCCTTAAGAAAGGCCTCCAGCTCACCACGGTGCTaGTCTTCCTTTTCCCATCCGTGGCTCTCAACAGAC | + |
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Preference number: 6 (lower is better) Translates to: RALRKASSSPRC*SSFSHPWLSTD Trigger: GTCTGTTGAGAGCCACGGATGGGAAAAGGAAGATCAGCACCGTGGTGAGCTGGAGGCCTTTCTTAAGGCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110862.2 |
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