Pregenerated sensors for SRMS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027579Ensembl transcript IDs: ENSMUST00000016498.5
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CATGAGTCTCTCTGGTGTGCATATGTAGGCACCAGCCTGTGTCAGTaGAGGAGCCGCAGTGTTGGAGCCCAGAGGCTCCTATCATTCTCA | + |
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Preference number: 1 (lower is better) Translates to: HESLWCAYVGTSLCQ*RSRSVGAQRLLSFS Trigger: TGAGAATGATAGGAGCCTCTGGGCTCCAACACTGCGGCTCCTTCACTGACACAGGCTGGTGCCTACATATGCACACCAGAGAGACTCATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| 3UTR GCA 90 bp | GGGCAAGGAGGAAACTGCTGGCTCTCGTCTGTCAAAGCACATCCTTaGGGCTCCTCCTCTATGCTTTATCAACACTTTGGAGACTGTGCC | + |
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Preference number: 1 (lower is better) Translates to: GQGGNCWLSSVKAHP*GSSSMLYQHFGDCA Trigger: GGCACAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATGTGCTTTGACAGACGAGAGCCAGCAGTTTCCTCCTTGCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| 3UTR GCA 90 bp | TCCTTGCGGCTCCTCCTCTATGCTTTATCAACACTTTGGAGACTGTaGCAGGAGGAGGGCATCAGCCTTCATATCTGTGTAAGTGCTCAT | + |
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Preference number: 1 (lower is better) Translates to: SLRLLLYALSTLWRL*QEEGISLHICVSAH Trigger: ATGAGCACTTACACAGATATGAAGGCTGATGCCCTCCTCCTGGCACAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| 3UTR CCA 90 bp | CAAAGCACATCCTTGCGGCTCCTCCTCTATGCTTTATCAACACTTTaGAGACTGTGCCAGGAGGAGGGCATCAGCCTTCATATCTGTGTA | + |
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Preference number: 1 (lower is better) Translates to: QSTSLRLLLYALSTL*RLCQEEGISLHICV Trigger: TACACAGATATGAAGGCTGATGCCCTCCTCCTGGCACAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATGTGCTTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| 3UTR TCA 90 bp | AGGACCAGTCTGAACACATCCATCCGATGTGCACATGTAGGTACATaGGTCTCTCTGGTGTGCACATGTAGTTGCATGAGTCTCTCTGGT | + |
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Preference number: 1 (lower is better) Translates to: RTSLNTSIRCAHVGT*VSLVCTCSCMSLSG Trigger: ACCAGAGAGACTCATGCAACTACATGTGCACACCAGAGAGACTCATGTACCTACATGTGCACATCGGATGGATGTGTTCAGACTGGTCCT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| 3UTR CAA 90 bp | AGGGCAAGGAGGAAACTGCTGGCTCTCGTCTGTCAAAGCACATCCTaGCGGCTCCTCCTCTATGCTTTATCAACACTTTGGAGACTGTGC | + |
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Preference number: 2 (lower is better) Translates to: RARRKLLALVCQSTS*RLLLYALSTLWRLC Trigger: GCACAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATGTGCTTTGACAGACGAGAGCCAGCAGTTTCCTCCTTGCCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| 3UTR CAA 90 bp | TCAAAGCACATCCTTGCGGCTCCTCCTCTATGCTTTATCAACACTTaGGAGACTGTGCCAGGAGGAGGGCATCAGCCTTCATATCTGTGT | + |
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Preference number: 2 (lower is better) Translates to: SKHILAAPPLCFINT*ETVPGGGHQPSYLC Trigger: ACACAGATATGAAGGCTGATGCCCTCCTCCTGGCACAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATGTGCTTTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| 3UTR-3UTR CCA 90 bp | CAAAGCACATCCTTGCGGCTCCTCCTCTATGCTTTATCAACACTTTGGAGACTGTTGCATGAGTCTCTCTaGTGTGCATATGTAGGCACC | + |
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Preference number: 2 (lower is better) Translates to: QSTSLRLLLYALSTLWRLLHESL*CAYVGT Trigger: GGTGCCTACATATGCACACCAGAGAGACTCATGCAA...CAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATGTGCTTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| 3UTR TCA 72 bp | CTCTGGTGTGCATATGTAGGCACCAGCCTGTGTCAGTaGAGGAGCCGCAGTGTTGGAGCCCAGAGGCTCCTA | + |
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Preference number: 3 (lower is better) Translates to: LWCAYVGTSLCQ*RSRSVGAQRLL Trigger: TAGGAGCCTCTGGGCTCCAACACTGCGGCTCCTTCACTGACACAGGCTGGTGCCTACATATGCACACCAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| 3UTR CCA 72 bp | AGGCACCAGCCTGTGTCAGTGAAGGAGCCGCAGTGTTaGAGCCCAGAGGCTCCTATCATTCTCAGTTGTGCA | + |
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Preference number: 3 (lower is better) Translates to: RHQPVSVKEPQC*SPEAPIILSCA Trigger: TGCACAACTGAGAATGATAGGAGCCTCTGGGCTCCAACACTGCGGCTCCTTCACTGACACAGGCTGGTGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| 3UTR GCA 72 bp | CATGACCAGGACCAGTCTGAACACATCCATCCGATGTaGACATGTAGGTACATGAGTCTCTCTGGTGTGCAC | + |
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Preference number: 3 (lower is better) Translates to: HDQDQSEHIHPM*TCRYMSLSGVH Trigger: GTGCACACCAGAGAGACTCATGTACCTACATGTGCACATCGGATGGATGTGTTCAGACTGGTCCTGGTCATG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| 3UTR GCA 72 bp | CGTCTGTCAAAGCACATCCTTGCGGCTCCTCCTCTATaGTTTATCAACACTTTGGAGACTGTGCCAGGAGGA | + |
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Preference number: 3 (lower is better) Translates to: RLSKHILAAPPL*FINTLETVPGG Trigger: TCCTCCTGGCACAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATGTGCTTTGACAGACG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| 3UTR TCA 72 bp | CATTCTCAGTTGTGCAGTATTTCCCATGGGCACTGGTaGCAAATGTTTCCTTGGGAGACACCCTTCAGGAAG | + |
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Preference number: 3 (lower is better) Translates to: HSQLCSISHGHW*QMFPWETPFRK Trigger: CTTCCTGAAGGGTGTCTCCCAAGGAAACATTTGTCACCAGTGCCCATGGGAAATACTGCACAACTGAGAATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| 3UTR GCA 72 bp | CTCCTCCTCTATGCTTTATCAACACTTTGGAGACTGTaGCAGGAGGAGGGCATCAGCCTTCATATCTGTGTA | + |
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Preference number: 3 (lower is better) Translates to: LLLYALSTLWRL*QEEGISLHICV Trigger: TACACAGATATGAAGGCTGATGCCCTCCTCCTGGCACAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| 3UTR CCA 72 bp | AGGCTCCTATCATTCTCAGTTGTGCAGTATTTCCCATaGGCACTGGTGACAAATGTTTCCTTGGGAGACACC | + |
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Preference number: 3 (lower is better) Translates to: RLLSFSVVQYFP*ALVTNVSLGDT Trigger: GGTGTCTCCCAAGGAAACATTTGTCACCAGTGCCCATGGGAAATACTGCACAACTGAGAATGATAGGAGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| 3UTR-3UTR CAA 90 bp | AGCCTTCATATCTGTGTAAGTGCTCATGACCAGGACCAGTCTGAACACATCCATGTGACAAATGTTTCCTaGGGAGACACCCTTCAGGAA | + |
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Preference number: 3 (lower is better) Translates to: SLHICVSAHDQDQSEHIHVTNVS*GDTLQE Trigger: TTCCTGAAGGGTGTCTCCCAAGGAAACATTTGTCAC...ATGGATGTGTTCAGACTGGTCCTGGTCATGAGCACTTACACAGATATGAAGGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR CCA 90 bp | CCCATGGGCACTGGTGACAAATGTTTCCTTGGGAGACACCCTTCAGGAAGCGGCTGCTGGGCAGACAGCTaGGCGTGGCAGCCGGTATCC | + |
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Preference number: 4 (lower is better) Translates to: PMGTGDKCFLGRHPSGSGCWADS*AWQPVS Trigger: GGATACCGGCTGCCACGCCCAGCTGTCTGCCCAGCA...GCCGCTTCCTGAAGGGTGTCTCCCAAGGAAACATTTGTCACCAGTGCCCATGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR CCA 90 bp | GACCAGGACCAGTCTGAACACATCCATCCGATGTGCACATGTAGGTACATGAGTGCAGCCAAGTCCCGGTaGACGACACGCCGCTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: DQDQSEHIHPMCTCRYMSAAKSR*TTRRSS Trigger: GGAGGAGCGGCGTGTCGTCCACCGGGACTTGGCTGC...ACTCATGTACCTACATGTGCACATCGGATGGATGTGTTCAGACTGGTCCTGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR GCA 90 bp | CAGCCTGTGTCAGTGAAGGAGCCGCAGTGTTGGAGCCCAGAGGCTCCTATCATTTGGGTGCCATGCAGATaGGGTAGTGGCAGACTTTGG | + |
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Preference number: 4 (lower is better) Translates to: QPVSVKEPQCWSPEAPIIWVPCR*GSGRLW Trigger: CCAAAGTCTGCCACTACCGCATCTGCATGGCACCCA...AATGATAGGAGCCTCTGGGCTCCAACACTGCGGCTCCTTCACTGACACAGGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR TCA 90 bp | GTATTTCCCATGGGCACTGGTGACAAATGTTTCCTTGGGAGACACCCTTCAGGATTTCGCTGGGCCGGATaGGGAAGGCCCCTGGTGCAT | + |
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Preference number: 4 (lower is better) Translates to: VFPMGTGDKCFLGRHPSGFRWAG*GRPLVH Trigger: ATGCACCAGGGGCCTTCCTCATCCGGCCCAGCGAAA...TCCTGAAGGGTGTCTCCCAAGGAAACATTTGTCACCAGTGCCCATGGGAAATAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR TCA 90 bp | CAGCCTGTGTCAGTGAAGGAGCCGCAGTGTTGGAGCCCAGAGGCTCCTATCATTAGTAGACATCATCCTTaGGCAGTCTGGCCAGGCCAA | + |
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Preference number: 4 (lower is better) Translates to: QPVSVKEPQCWSPEAPIISRHHP*AVWPGQ Trigger: TTGGCCTGGCCAGACTGCTCAAGGATGATGTCTACT...AATGATAGGAGCCTCTGGGCTCCAACACTGCGGCTCCTTCACTGACACAGGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR TCA 90 bp | CATCCTTGCGGCTCCTCCTCTATGCTTTATCAACACTTTGGAGACTGTGCCAGGCAGGTGCCGTCCACTTaGCAGGGATCTTGGAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: HPCGSSSMLYQHFGDCARQVPST*QGSWSH Trigger: GTGGCTCCAAGATCCCTGTCAAGTGGACGGCACCTG...CCTGGCACAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR TCA 90 bp | AAGCACATCCTTGCGGCTCCTCCTCTATGCTTTATCAACACTTTGGAGACTGTGGTCTGTCCCCACGGCTaGCGCTCAGTTCCTCTGCAC | + |
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Preference number: 4 (lower is better) Translates to: KHILAAPPLCFINTLETVVCPHG*RSVPLH Trigger: GTGCAGAGGAACTGAGCGTCAGCCGTGGGGACAGAC...CACAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATGTGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| 3UTR CAA 72 bp | CAGTATTTCCCATGGGCACTGGTGACAAATGTTTCCTaGGGAGACACCCTTCAGGAAGCGGCAGCCCTAGCT | + |
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Preference number: 4 (lower is better) Translates to: QYFPWALVTNVS*GDTLQEAAALA Trigger: AGCTAGGGCTGCCGCTTCCTGAAGGGTGTCTCCCAAGGAAACATTTGTCACCAGTGCCCATGGGAAATACTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR TCA 90 bp | GCTCCTATCATTCTCAGTTGTGCAGTATTTCCCATGGGCACTGGTGACAAATGTAGCAACTGCTGGGCCTaGGCCCTGCTGATCCCACTG | + |
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Preference number: 4 (lower is better) Translates to: APIILSCAVFPMGTGDKCSNCWA*ALLIPL Trigger: CAGTGGGATCAGCAGGGCTCAGGCCCAGCAGTTGCT...ACATTTGTCACCAGTGCCCATGGGAAATACTGCACAACTGAGAATGATAGGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR GCA 90 bp | AAGCACATCCTTGCGGCTCCTCCTCTATGCTTTATCAACACTTTGGAGACTGTGGAGCACATAGACCTCTaGTGGGCAGACAGCTGGGCG | + |
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Preference number: 4 (lower is better) Translates to: KHILAAPPLCFINTLETVEHIDL*WADSWA Trigger: CGCCCAGCTGTCTGCCCAGCAGAGGTCTATGTGCTC...CACAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATGTGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR TCA 90 bp | AAGCACATCCTTGCGGCTCCTCCTCTATGCTTTATCAACACTTTGGAGACTGTGCAGCTACCTTGCAGGTaGGGTCATCACCCACCAGCA | + |
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Preference number: 4 (lower is better) Translates to: KHILAAPPLCFINTLETVQLPCR*GHHPPA Trigger: TGCTGGTGGGTGATGACCTCACCTGCAAGGTAGCTG...CACAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATGTGCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR GCA 90 bp | GACCAGGACCAGTCTGAACACATCCATCCGATGTGCACATGTAGGTACATGAGTCGGATCAGCCTCTCATaGCTCAAGCTCTTCAGTGCC | + |
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Preference number: 4 (lower is better) Translates to: DQDQSEHIHPMCTCRYMSRISLS*LKLFSA Trigger: GGCACTGAAGAGCTTGAGGCATGAGAGGCTGATCCG...ACTCATGTACCTACATGTGCACATCGGATGGATGTGTTCAGACTGGTCCTGGTC 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR CCA 90 bp | AGCCTTCATATCTGTGTAAGTGCTCATGACCAGGACCAGTCTGAACACATCCATCACATAGACCTCTGCTaGGCAGACAGCTGGGCGTGG | + |
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Preference number: 4 (lower is better) Translates to: SLHICVSAHDQDQSEHIHHIDLC*ADSWAW Trigger: CCACGCCCAGCTGTCTGCCCAGCAGAGGTCTATGTG...ATGGATGTGTTCAGACTGGTCCTGGTCATGAGCACTTACACAGATATGAAGGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR GCA 90 bp | GCTCCTATCATTCTCAGTTGTGCAGTATTTCCCATGGGCACTGGTGACAAATGTCCTGCAGATAGAGGCTaGCACTGGGTGCCATGCAGA | + |
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Preference number: 4 (lower is better) Translates to: APIILSCAVFPMGTGDKCPADRG*HWVPCR Trigger: TCTGCATGGCACCCAGTGGCAGCCTCTATCTGCAGG...ACATTTGTCACCAGTGCCCATGGGAAATACTGCACAACTGAGAATGATAGGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR GCA 90 bp | CAAAGCACATCCTTGCGGCTCCTCCTCTATGCTTTATCAACACTTTGGAGACTGGTAGTAAGCCAGCAGTaGATCCAGGCTGGGGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: QSTSLRLLLYALSTLWRLVVSQQ*IQAGEE Trigger: CTCTTCCCCAGCCTGGATGCACTGCTGGCTTACTAC...CAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATGTGCTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR GCA 90 bp | CATCCTTGCGGCTCCTCCTCTATGCTTTATCAACACTTTGGAGACTGTGCCAGGCCTCAAGCTCTTCAGTaGCTCAATCTCCTTGGTGAG | + |
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Preference number: 4 (lower is better) Translates to: HPCGSSSMLYQHFGDCARPQALQ*LNLLGE Trigger: CTCACCAAGGAGATTGAGGCACTGAAGAGCTTGAGG...CCTGGCACAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR CCA 90 bp | AAGCACATCCTTGCGGCTCCTCCTCTATGCTTTATCAACACTTTGGAGACTGTGAGGCCCCTGGTGCATTaGCAGGAGACAAGAGCAACT | + |
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Preference number: 4 (lower is better) Translates to: KHILAAPPLCFINTLETVRPLVH*QETRAT Trigger: AGTTGCTCTTGTCTCCTGCCAATGCACCAGGGGCCT...CACAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATGTGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR CCA 90 bp | CTCAGTTGTGCAGTATTTCCCATGGGCACTGGTGACAAATGTTTCCTTGGGAGATGGCAGACTTTGGCCTaGGCCCTGACTGATAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: LSCAVFPMGTGDKCFLGRWQTLA*ALTDRE Trigger: TTCTCTATCAGTCAGGGCCCAGGCCAAAGTCTGCCA...TCTCCCAAGGAAACATTTGTCACCAGTGCCCATGGGAAATACTGCACAACTGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR CCA 90 bp | CAAAGCACATCCTTGCGGCTCCTCCTCTATGCTTTATCAACACTTTGGAGACTGTGCAGCAGAGGGTTCTaGATCAGCTTCCAGTTGGTC | + |
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Preference number: 4 (lower is better) Translates to: QSTSLRLLLYALSTLWRLCSRGF*ISFQLV Trigger: GACCAACTGGAAGCTGATCCAGAACCCTCTGCTGCA...CAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATGTGCTTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR TCA 90 bp | GCTCCTATCATTCTCAGTTGTGCAGTATTTCCCATGGGCACTGGTGACAAATGTCCTCAATCTCCTTGGTaGGGTCTGCCAGCTTCATGT | + |
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Preference number: 4 (lower is better) Translates to: APIILSCAVFPMGTGDKCPQSPW*GLPASC Trigger: ACATGAAGCTGGCAGACCTCACCAAGGAGATTGAGG...ACATTTGTCACCAGTGCCCATGGGAAATACTGCACAACTGAGAATGATAGGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR TCA 90 bp | AAGCACATCCTTGCGGCTCCTCCTCTATGCTTTATCAACACTTTGGAGACTGTGGACACTGGCCATAAGTaGAGACCTCATACAGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: KHILAAPPLCFINTLETVDTGHK*RPHTAG Trigger: TCCTGCTGTATGAGGTCTTCACTTATGGCCAGTGTC...CACAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATGTGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR GCA 90 bp | AACCACCAGAACATGTTTATTGAAGCTGACTTTGTGTTCCTAAGGTTTACTGGTTCAACGGCAGCGGCTTaGTCCGGCACTGGGTTGTCG | + |
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Preference number: 4 (lower is better) Translates to: NHQNMFIEADFVFLRFTGSTAAA*SGTGLS Trigger: CGACAACCCAGTGCCGGAGCAAGCCGCTGCCGTTGA...ACCAGTAAACCTTAGGAACACAAAGTCAGCTTCAATAAACATGTTCTGGTGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR CCA 90 bp | AACCACCAGAACATGTTTATTGAAGCTGACTTTGTGTTCCTAAGGTTTACTGGTGGCTTGCTCCGGCACTaGGTTGTCGTCGTGTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: NHQNMFIEADFVFLRFTGGLLRH*VVVVSL Trigger: CAGGGACACGACGACAACCCAGTGCCGGAGCAAGCC...ACCAGTAAACCTTAGGAACACAAAGTCAGCTTCAATAAACATGTTCTGGTGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR CCA 90 bp | AAGCACATCCTTGCGGCTCCTCCTCTATGCTTTATCAACACTTTGGAGACTGTGCTTGGAGCCACTGCTTaGGGAGTAGACATCATCCTT | + |
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Preference number: 4 (lower is better) Translates to: KHILAAPPLCFINTLETVLGATA*GVDIIL Trigger: AAGGATGATGTCTACTCCCCAAGCAGTGGCTCCAAG...CACAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATGTGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR GCA 90 bp | CAGAACATGTTTATTGAAGCTGACTTTGTGTTCCTAAGGTTTACTGGTACCTGTGAGAATAGCCCCCGATaGTGCTTTCGCTGGGCCGGA | + |
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Preference number: 4 (lower is better) Translates to: QNMFIEADFVFLRFTGTCENSPR*CFRWAG Trigger: TCCGGCCCAGCGAAAGCAGCATCGGGGGCTATTCTC...ACAGGTACCAGTAAACCTTAGGAACACAAAGTCAGCTTCAATAAACATGTTCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR CCA 90 bp | AACCACCAGAACATGTTTATTGAAGCTGACTTTGTGTTCCTAAGGTTTACTGGTCTGAAGTACCAAGGTTaGTCTGAGGGCGGCTCCGGG | + |
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Preference number: 4 (lower is better) Translates to: NHQNMFIEADFVFLRFTGLKYQG*SEGGSG Trigger: CCCGGAGCCGCCCTCAGACCAACCTTGGTACTTCAG...ACCAGTAAACCTTAGGAACACAAAGTCAGCTTCAATAAACATGTTCTGGTGGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR CCA 90 bp | AGCCTTCATATCTGTGTAAGTGCTCATGACCAGGACCAGTCTGAACACATCCATGGAGGCGTCTGTTTATaGCATTCAGCTTCTCCCTCA | + |
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Preference number: 4 (lower is better) Translates to: SLHICVSAHDQDQSEHIHGGVCL*HSASPS Trigger: TGAGGGAGAAGCTGAATGCCATAAACAGACGCCTCC...ATGGATGTGTTCAGACTGGTCCTGGTCATGAGCACTTACACAGATATGAAGGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR CCA 90 bp | ATCATTCTCAGTTGTGCAGTATTTCCCATGGGCACTGGTGACAAATGTTTCCTTATGCCCTCAGCTACCTaGCAGGCAAATCCCAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: IILSCAVFPMGTGDKCFLMPSAT*QANPSR Trigger: TCTACTGGGATTTGCCTGCCAGGTAGCTGAGGGCAT...AAGGAAACATTTGTCACCAGTGCCCATGGGAAATACTGCACAACTGAGAATGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS TCA 90 bp | CAAAGGTGGGACGCTCCTCAGGGCTGCCCTTCCAGCACTCTACCATaGGCACATAGACCTCTGCTGGGCAGACAGCTGGGCGTGGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: QRWDAPQGCPSSTLP*AHRPLLGRQLGVAA Trigger: GGCTGCCACGCCCAGCTGTCTGCCCAGCAGAGGTCTATGTGCTCATGGTAGAGTGCTGGAAGGGCAGCCCTGAGGAGCGTCCCACCTTTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS GCA 90 bp | GCTGGGGAAGAGTTGGCCCTCCTGCAGATAGAGGCTGCCACTGGGTaGCATGCAGATGCGGTAGTGGCAGACTTTGGCCTGGGCCCTGAC | + |
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Preference number: 5 (lower is better) Translates to: AGEELALLQIEAATG*HADAVVADFGLGPD Trigger: GTCAGGGCCCAGGCCAAAGTCTGCCACTACCGCATCTGCATGGCACCCAGTGGCAGCCTCTATCTGCAGGAGGGCCAACTCTTCCCCAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS CCA 90 bp | ATAGCCCCCGATGCTGCTTTCGCTGGGCCGGATGAGGAAGGCCCCTaGTGCATTGGCAGGAGACAAGAGCAACTGCTGGGCCTGAGCCCT | + |
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Preference number: 5 (lower is better) Translates to: IAPDAAFAGPDEEGP*CIGRRQEQLLGLSP Trigger: AGGGCTCAGGCCCAGCAGTTGCTCTTGTCTCCTGCCAATGCACCAGGGGCCTTCCTCATCCGGCCCAGCGAAAGCAGCATCGGGGGCTAT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS GCA 90 bp | GTGCATCCAGGCTGGGGAAGAGTTGGCCCTCCTGCAGATAGAGGCTaGCACTGGGTGCCATGCAGATGCGGTAGTGGCAGACTTTGGCCT | + |
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Preference number: 5 (lower is better) Translates to: VHPGWGRVGPPADRG*HWVPCRCGSGRLWP Trigger: AGGCCAAAGTCTGCCACTACCGCATCTGCATGGCACCCAGTGGCAGCCTCTATCTGCAGGAGGGCCAACTCTTCCCCAGCCTGGATGCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR CAA 90 bp | CCCATGGGCACTGGTGACAAATGTTTCCTTGGGAGACACCCTTCAGGAAGCGGCTCAGGTGCCGTCCACTaGACAGGGATCTTGGAGCCA | + |
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Preference number: 5 (lower is better) Translates to: PMGTGDKCFLGRHPSGSGSGAVH*TGILEP Trigger: TGGCTCCAAGATCCCTGTCAAGTGGACGGCACCTGA...GCCGCTTCCTGAAGGGTGTCTCCCAAGGAAACATTTGTCACCAGTGCCCATGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS CCA 90 bp | GGGGTATGCAGGGCTGCAGCAGAGGGTTCTGGATCAGCTTCCAGTTaGTCTTGTAGTAAGCCAGCAGTGCATCCAGGCTGGGGAAGAGTT | + |
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Preference number: 5 (lower is better) Translates to: GVCRAAAEGSGSASS*SCSKPAVHPGWGRV Trigger: AACTCTTCCCCAGCCTGGATGCACTGCTGGCTTACTACAAGACCAACTGGAAGCTGATCCAGAACCCTCTGCTGCAGCCCTGCATACCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS GCA 90 bp | AGGGTTCTGGATCAGCTTCCAGTTGGTCTTGTAGTAAGCCAGCAGTaGATCCAGGCTGGGGAAGAGTTGGCCCTCCTGCAGATAGAGGCT | + |
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Preference number: 5 (lower is better) Translates to: RVLDQLPVGLVVSQQ*IQAGEELALLQIEA Trigger: AGCCTCTATCTGCAGGAGGGCCAACTCTTCCCCAGCCTGGATGCACTGCTGGCTTACTACAAGACCAACTGGAAGCTGATCCAGAACCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR CAA 90 bp | CATCCTTGCGGCTCCTCCTCTATGCTTTATCAACACTTTGGAGACTGTGCCAGGCAGGCTGGGGAAGAGTaGGCCCTCCTGCAGATAGAG | + |
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Preference number: 5 (lower is better) Translates to: HPCGSSSMLYQHFGDCARQAGEE*ALLQIE Trigger: CTCTATCTGCAGGAGGGCCAACTCTTCCCCAGCCTG...CCTGGCACAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS TCA 90 bp | TTTCTCCGAAGGACAAATTCTGAACGTGGTCGTTCCCACTCGTCCTaGACCAAGGGTATCTGGGGTATGCAGGGCTGCAGCAGAGGGTTC | + |
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Preference number: 5 (lower is better) Translates to: FLRRTNSERGRSHSS*TKGIWGMQGCSRGF Trigger: GAACCCTCTGCTGCAGCCCTGCATACCCCAGATACCCTTGGTTCAGGACGAGTGGGAACGACCACGTTCAGAATTTGTCCTTCGGAGAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS TCA 90 bp | CTCCCCGAAGAAACCTTCACCCAGCTTTCTCCGAAGGACAAATTCTaGACGTGGTCGTTCCCACTCGTCCTGAACCAAGGGTATCTGGGG | + |
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Preference number: 5 (lower is better) Translates to: LPEETFTQLSPKDKF*TWSFPLVLNQGYLG Trigger: CCCCAGATACCCTTGGTTCAGGACGAGTGGGAACGACCACGTTCAGAATTTGTCCTTCGGAGAAAGCTGGGTGAAGGTTTCTTCGGGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS TCA 90 bp | CAGTGCCTCAATCTCCTTGGTGAGGTCTGCCAGCTTCATGTCAGCTaGTTTGATAACCTTCACTGCCACAGGGATAGAGCCCAGCCACAG | + |
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Preference number: 5 (lower is better) Translates to: QCLNLLGEVCQLHVS*FDNLHCHRDRAQPQ Trigger: CTGTGGCTGGGCTCTATCCCTGTGGCAGTGAAGGTTATCAAATCAGCTGACATGAAGCTGGCAGACCTCACCAAGGAGATTGAGGCACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS GCA 90 bp | AGTTCAGTAACGATGTACACAGGTTCACCGAGGGAACATATAGCGTaGAGCCGGATCAGCCTCTCATGCCTCAAGCTCTTCAGTGCCTCA | + |
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Preference number: 5 (lower is better) Translates to: SSVTMYTGSPREHIA*SRISLSCLKLFSAS Trigger: TGAGGCACTGAAGAGCTTGAGGCATGAGAGGCTGATCCGGCTGCACGCTATATGTTCCCTCGGTGAACCTGTGTACATCGTTACTGAACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR CAA 90 bp | AAGCACATCCTTGCGGCTCCTCCTCTATGCTTTATCAACACTTTGGAGACTGTGCACTTGACAGGGATCTaGGAGCCACTGCTTGGGGAG | + |
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Preference number: 5 (lower is better) Translates to: KHILAAPPLCFINTLETVHLTGI*EPLLGE Trigger: CTCCCCAAGCAGTGGCTCCAAGATCCCTGTCAAGTG...CACAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATGTGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR CAA 90 bp | CAAAGCACATCCTTGCGGCTCCTCCTCTATGCTTTATCAACACTTTGGAGACTGAGTGCCTCAATCTCCTaGGTGAGGTCTGCCAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: QSTSLRLLLYALSTLWRLSASIS*VRSASF Trigger: GAAGCTGGCAGACCTCACCAAGGAGATTGAGGCACT...CAGTCTCCAAAGTGTTGATAAAGCATAGAGGAGGAGCCGCAAGGATGTGCTTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR CAA 90 bp | GACCAGGACCAGTCTGAACACATCCATCCGATGTGCACATGTAGGTACATGAGTACTTGCAAGTTGCCCTaGCCCATGAGTTCAGTAACG | + |
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Preference number: 5 (lower is better) Translates to: DQDQSEHIHPMCTCRYMSTCKLP*PMSSVT Trigger: CGTTACTGAACTCATGGGCAAGGGCAACTTGCAAGT...ACTCATGTACCTACATGTGCACATCGGATGGATGTGTTCAGACTGGTCCTGGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS-3UTR CAA 90 bp | AACCACCAGAACATGTTTATTGAAGCTGACTTTGTGTTCCTAAGGTTTACTGGTAAGGCCCCTGGTGCATaGGCAGGAGACAAGAGCAAC | + |
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Preference number: 5 (lower is better) Translates to: NHQNMFIEADFVFLRFTGKAPGA*AGDKSN Trigger: GTTGCTCTTGTCTCCTGCCAATGCACCAGGGGCCTT...ACCAGTAAACCTTAGGAACACAAAGTCAGCTTCAATAAACATGTTCTGGTGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS TCA 72 bp | GACGCTCCTCAGGGCTGCCCTTCCAGCACTCTACCATaGGCACATAGACCTCTGCTGGGCAGACAGCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: DAPQGCPSSTLP*AHRPLLGRQLG Trigger: GCCCAGCTGTCTGCCCAGCAGAGGTCTATGTGCTCATGGTAGAGTGCTGGAAGGGCAGCCCTGAGGAGCGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS CCA 72 bp | GCTACAAGGTTCAACGGCAGCGGCTTGCTCCGGCACTaGGTTGTCGTCGTGTCCCTGGATCCTGGGGATGTC | + |
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Preference number: 6 (lower is better) Translates to: ATRFNGSGLLRH*VVVVSLDPGDV Trigger: GACATCCCCAGGATCCAGGGACACGACGACAACCCAGTGCCGGAGCAAGCCGCTGCCGTTGAACCTTGTAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS CCA 72 bp | GATGCTGCTTTCGCTGGGCCGGATGAGGAAGGCCCCTaGTGCATTGGCAGGAGACAAGAGCAACTGCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: DAAFAGPDEEGP*CIGRRQEQLLG Trigger: GCCCAGCAGTTGCTCTTGTCTCCTGCCAATGCACCAGGGGCCTTCCTCATCCGGCCCAGCGAAAGCAGCATC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS CCA 72 bp | ATGCCCTCAGCTACCTGGCAGGCAAATCCCAGTAGATaGGGCAGGCTCAGGGCCTTTCCCTCAGAGCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: MPSATWQANPSR*GRLRAFPSELP Trigger: GGGCAGCTCTGAGGGAAAGGCCCTGAGCCTGCCCCATCTACTGGGATTTGCCTGCCAGGTAGCTGAGGGCAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS TCA 72 bp | AGCCCTGCTGATCCCACTGAAGTACCAAGGTTGGTCTaGGGGCGGCTCCGGGGTAGCCTTGGCAAGGTAGGT | + |
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Preference number: 6 (lower is better) Translates to: SPADPTEVPRLV*GRLRGSLGKVG Trigger: ACCTACCTTGCCAAGGCTACCCCGGAGCCGCCCTCAGACCAACCTTGGTACTTCAGTGGGATCAGCAGGGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS TCA 72 bp | GAGAATAGCCCCCGATGCTGCTTTCGCTGGGCCGGATaGGGAAGGCCCCTGGTGCATTGGCAGGAGACAAGA | + |
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Preference number: 6 (lower is better) Translates to: ENSPRCCFRWAG*GRPLVHWQETR Trigger: TCTTGTCTCCTGCCAATGCACCAGGGGCCTTCCTCATCCGGCCCAGCGAAAGCAGCATCGGGGGCTATTCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS TCA 72 bp | GGTGCATTGGCAGGAGACAAGAGCAACTGCTGGGCCTaGGCCCTGCTGATCCCACTGAAGTACCAAGGTTGG | + |
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Preference number: 6 (lower is better) Translates to: GALAGDKSNCWA*ALLIPLKYQGW Trigger: CCAACCTTGGTACTTCAGTGGGATCAGCAGGGCTCAGGCCCAGCAGTTGCTCTTGTCTCCTGCCAATGCACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS TCA 72 bp | TGCAGATGCGGTAGTGGCAGACTTTGGCCTGGGCCCTaGCTGATAGAGAATAGCCCCCGATGCTGCTTTCGC | + |
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Preference number: 6 (lower is better) Translates to: CRCGSGRLWPGP*LIENSPRCCFR Trigger: GCGAAAGCAGCATCGGGGGCTATTCTCTATCAGTCAGGGCCCAGGCCAAAGTCTGCCACTACCGCATCTGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS CCA 72 bp | GGCGTCTGTTTATGGCATTCAGCTTCTCCCTCAGTATaGCAAAGGTGGGACGCTCCTCAGGGCTGCCCTTCC | + |
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Preference number: 6 (lower is better) Translates to: GVCLWHSASPSV*QRWDAPQGCPS Trigger: GGAAGGGCAGCCCTGAGGAGCGTCCCACCTTTGCCATACTGAGGGAGAAGCTGAATGCCATAAACAGACGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS CAA 90 bp | ATGGGGCAGGCTCAGGGCCTTTCCCTCAGAGCTGCCCAGGTAGACTaGCAAGTTGCCCTTGCCCATGAGTTCAGTAACGATGTACACAGG | + |
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Preference number: 6 (lower is better) Translates to: MGQAQGLSLRAAQVD*QVALAHEFSNDVHR Trigger: CCTGTGTACATCGTTACTGAACTCATGGGCAAGGGCAACTTGCAAGTCTACCTGGGCAGCTCTGAGGGAAAGGCCCTGAGCCTGCCCCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS GCA 72 bp | GATCAGCTTCCAGTTGGTCTTGTAGTAAGCCAGCAGTaGATCCAGGCTGGGGAAGAGTTGGCCCTCCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: DQLPVGLVVSQQ*IQAGEELALLQ Trigger: CTGCAGGAGGGCCAACTCTTCCCCAGCCTGGATGCACTGCTGGCTTACTACAAGACCAACTGGAAGCTGATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS CCA 72 bp | AGTTGGTCTTGTAGTAAGCCAGCAGTGCATCCAGGCTaGGGAAGAGTTGGCCCTCCTGCAGATAGAGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: SWSCSKPAVHPG*GRVGPPADRGC Trigger: GCAGCCTCTATCTGCAGGAGGGCCAACTCTTCCCCAGCCTGGATGCACTGCTGGCTTACTACAAGACCAACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS CAA 72 bp | TCCTTGAGCAGTCTGGCCAGGCCAAAATCAGCTACCTaGCAGGTGAGGTCATCACCCACCAGCACGTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: SLSSLARPKSAT*QVRSSPTSTFL Trigger: CAGGAACGTGCTGGTGGGTGATGACCTCACCTGCAAGGTAGCTGATTTTGGCCTGGCCAGACTGCTCAAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS TCA 72 bp | AGGACAAATTCTGAACGTGGTCGTTCCCACTCGTCCTaGACCAAGGGTATCTGGGGTATGCAGGGCTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: RTNSERGRSHSS*TKGIWGMQGCS Trigger: GCTGCAGCCCTGCATACCCCAGATACCCTTGGTTCAGGACGAGTGGGAACGACCACGTTCAGAATTTGTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS CAA 72 bp | GCTCAGGGCCTTTCCCTCAGAGCTGCCCAGGTAGACTaGCAAGTTGCCCTTGCCCATGAGTTCAGTAACGAT | + |
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Preference number: 6 (lower is better) Translates to: AQGLSLRAAQVD*QVALAHEFSND Trigger: ATCGTTACTGAACTCATGGGCAAGGGCAACTTGCAAGTCTACCTGGGCAGCTCTGAGGGAAAGGCCCTGAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS GCA 72 bp | AGGGAACATATAGCGTGCAGCCGGATCAGCCTCTCATaGCTCAAGCTCTTCAGTGCCTCAATCTCCTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: REHIACSRISLS*LKLFSASISLV Trigger: CACCAAGGAGATTGAGGCACTGAAGAGCTTGAGGCATGAGAGGCTGATCCGGCTGCACGCTATATGTTCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS GCA 72 bp | ACGATGTACACAGGTTCACCGAGGGAACATATAGCGTaGAGCCGGATCAGCCTCTCATGCCTCAAGCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: TMYTGSPREHIA*SRISLSCLKLF Trigger: GAAGAGCTTGAGGCATGAGAGGCTGATCCGGCTGCACGCTATATGTTCCCTCGGTGAACCTGTGTACATCGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS GCA 72 bp | CTTTTGGGAAAAGACACGGTAATTAGCAGCCTCAGGTaGCGTCCACTTGACAGGGATCTTGGAGCCACTGCT | + |
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Preference number: 6 (lower is better) Translates to: LLGKDTVISSLR*RPLDRDLGATA Trigger: AGCAGTGGCTCCAAGATCCCTGTCAAGTGGACGGCACCTGAGGCTGCTAATTACCGTGTCTTTTCCCAAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS CAA 72 bp | TCCTTGGTGAGGTCTGCCAGCTTCATGTCAGCTGATTaGATAACCTTCACTGCCACAGGGATAGAGCCCAGC | + |
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Preference number: 6 (lower is better) Translates to: SLVRSASFMSAD*ITFTATGIEPS Trigger: GCTGGGCTCTATCCCTGTGGCAGTGAAGGTTATCAAATCAGCTGACATGAAGCTGGCAGACCTCACCAAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS TCA 72 bp | AATCTCCTTGGTGAGGTCTGCCAGCTTCATGTCAGCTaGTTTGATAACCTTCACTGCCACAGGGATAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: NLLGEVCQLHVS*FDNLHCHRDRA Trigger: GGCTCTATCCCTGTGGCAGTGAAGGTTATCAAATCAGCTGACATGAAGCTGGCAGACCTCACCAAGGAGATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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| CDS CCA 72 bp | CTGGATCCTGGGGATGTCTTCCTCCGATTCATCCGCTaGCCATATCTTATCCCAGAAAAAGGACAAGAAAGT | + |
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Preference number: 6 (lower is better) Translates to: LDPGDVFLRFIR*PYLIPEKGQES Trigger: ACTTTCTTGTCCTTTTTCTGGGATAAGATATGGCCAGCGGATGAATCGGAGGAAGACATCCCCAGGATCCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016498.5 |
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