Pregenerated sensors for SRI (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003161Ensembl transcript IDs: ENSMUST00000088786.11, ENSMUST00000148633.4
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTATACTTTCTAGTATGTGGACTGCCAGGTTCATTGGTTTGTTTTaGCCAACTGTGGATGTATGCCACTTAAGAATACCCCACACAAAC | + |
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Preference number: 1 (lower is better) Translates to: LILSSMWTARFIGLF*PTVDVCHLRIPHTN Trigger: GTTTGTGTGGGGTATTCTTAAGTGGCATACATCCACAGTTGGGCAAAACAAACCAATGAACCTGGCAGTCCACATACTAGAAAGTATAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR GCA 90 bp | CCAGTTGTAAGTGAATCGTTTACTTGGATGGTCAGATTCACATTGTaGCAGAAACAAGACAGATACATTGCTAGCGAGAGAAGACTTAAC | + |
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Preference number: 1 (lower is better) Translates to: PVVSESFTWMVRFTL*QKQDRYIASERRLN Trigger: GTTAAGTCTTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGAATCTGACCATCCAAGTAAACGATTCACTTACAACTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR CCA 90 bp | GAAGACTTAACCATTGTTAGCTGCCAAACTGTAACAACAAAACCCTaGGGATGCTTTTTACTCAAATATACCTTTGCATACTCAGAACTA | + |
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Preference number: 1 (lower is better) Translates to: EDLTIVSCQTVTTKP*GCFLLKYTFAYSEL Trigger: TAGTTCTGAGTATGCAAAGGTATATTTGAGTAAAAAGCATCCCCAGGGTTTTGTTGTTACAGTTTGGCAGCTAACAATGGTTAAGTCTTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CCA 90 bp | GAATACCCCACACAAACTTTAACCACATTCCTCAGGGAAAGAAACAATAACAGCACGGTTGTCAGGGAGTaGCTGTCGGTGGGGTCTGCA | + |
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Preference number: 2 (lower is better) Translates to: EYPTQTLTTFLRERNNNSTVVRE*LSVGSA Trigger: TGCAGACCCCACCGACAGCCACTCCCTGACAACCGT...GCTGTTATTGTTTCTTTCCCTGAGGAATGTGGTTAAAGTTTGTGTGGGGTATTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CCA 90 bp | TTCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAGAAGACTTAACACGGTTGTCAGGGAGTaGCTGTCGGTGGGGTCTGCA | + |
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Preference number: 2 (lower is better) Translates to: FTLCQKQDRYIASERRLNTVVRE*LSVGSA Trigger: TGCAGACCCCACCGACAGCCACTCCCTGACAACCGT...GTTAAGTCTTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR TCA 90 bp | ACTTGGATGGTCAGATTCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGTCTGCACACAGCACTaGAGGCAGAGAGGAAGCAAG | + |
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Preference number: 2 (lower is better) Translates to: TWMVRFTLCQKQDRYIASVCTQH*RQRGSK Trigger: CTTGCTTCCTCTCTGCCTTCAGTGCTGTGTGCAGAC...GCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGAATCTGACCATCCAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR TCA 90 bp | TGGTCAGATTCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAGAAGTACATGAGTATTGCTaGGCTGTCTCTCCTCCCCTG | + |
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Preference number: 2 (lower is better) Translates to: WSDSHCARNKTDTLLAREVHEYC*AVSPPL Trigger: CAGGGGAGGAGAGACAGCTCAGCAATACTCATGTAC...TTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGAATCTGACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CCA 90 bp | ACAGATACATTGCTAGCGAGAGAAGACTTAACCATTGTTAGCTGCCAAACTGTAGTAAGCCACCCAACATaGGCGCTGGGGACTTTAGTC | + |
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Preference number: 2 (lower is better) Translates to: TDTLLAREDLTIVSCQTVVSHPT*ALGTLV Trigger: GACTAAAGTCCCCAGCGCCCATGTTGGGTGGCTTAC...TACAGTTTGGCAGCTAACAATGGTTAAGTCTTCTCTCGCTAGCAATGTATCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR TCA 90 bp | ACAGATACATTGCTAGCGAGAGAAGACTTAACCATTGTTAGCTGCCAAACTGTAGTACATGAGTATTGCTaGGCTGTCTCTCCTCCCCTG | + |
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Preference number: 2 (lower is better) Translates to: TDTLLAREDLTIVSCQTVVHEYC*AVSPPL Trigger: CAGGGGAGGAGAGACAGCTCAGCAATACTCATGTAC...TACAGTTTGGCAGCTAACAATGGTTAAGTCTTCTCTCGCTAGCAATGTATCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR TCA 90 bp | TGGTCAGATTCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAGAATGGGATATCTGCAGGTaGAATGAAGGTGACCATGGG | + |
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Preference number: 2 (lower is better) Translates to: WSDSHCARNKTDTLLAREWDICR*NEGDHG Trigger: CCCATGGTCACCTTCATTTCACCTGCAGATATCCCA...TTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGAATCTGACCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR TCA 90 bp | CCTTTGTGTGTGTGTGTTTGTGTAAAACCTAATACGCTATTAGAGAATACTTGGGTCTGCACACAGCACTaGAGGCAGAGAGGAAGCAAG | + |
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Preference number: 2 (lower is better) Translates to: PLCVCVCVKPNTLLENTWVCTQH*RQRGSK Trigger: CTTGCTTCCTCTCTGCCTTCAGTGCTGTGTGCAGAC...CCAAGTATTCTCTAATAGCGTATTAGGTTTTACACAAACACACACACACAAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR TCA 90 bp | TTCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAGAAGACTTAACTGGGATATCTGCAGGTaGAATGAAGGTGACCATGGG | + |
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Preference number: 2 (lower is better) Translates to: FTLCQKQDRYIASERRLNWDICR*NEGDHG Trigger: CCCATGGTCACCTTCATTTCACCTGCAGATATCCCA...GTTAAGTCTTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CCA 90 bp | CCTTTGTGTGTGTGTGTTTGTGTAAAACCTAATACGCTATTAGAGAATACTTGGGTAAGCCACCCAACATaGGCGCTGGGGACTTTAGTC | + |
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Preference number: 2 (lower is better) Translates to: PLCVCVCVKPNTLLENTWVSHPT*ALGTLV Trigger: GACTAAAGTCCCCAGCGCCCATGTTGGGTGGCTTAC...CCAAGTATTCTCTAATAGCGTATTAGGTTTTACACAAACACACACACACAAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR TCA 90 bp | TCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAGAAGACTTAACCCATAAGAGCAGTACATaGGTATTGCTGAGCTGTCTC | + |
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Preference number: 2 (lower is better) Translates to: SHCARNKTDTLLAREDLTHKSST*VLLSCL Trigger: GAGACAGCTCAGCAATACTCATGTACTGCTCTTATG...GGTTAAGTCTTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CCA 90 bp | TGGTCAGATTCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAGAAGACTGCCAGGTTCATTaGTTTGTTTTGCCCAACTGT | + |
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Preference number: 2 (lower is better) Translates to: WSDSHCARNKTDTLLAREDCQVH*FVLPNC Trigger: ACAGTTGGGCAAAACAAACCAATGAACCTGGCAGTC...TTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGAATCTGACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CCA 90 bp | TCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAGAAGACTTAACCACTTGGAAATTGAGTTaGAAGGAAGACCCTACTCCC | + |
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Preference number: 2 (lower is better) Translates to: SHCARNKTDTLLAREDLTTWKLS*KEDPTP Trigger: GGGAGTAGGGTCTTCCTTCCAACTCAATTTCCAAGT...GGTTAAGTCTTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR GCA 90 bp | ACAGATACATTGCTAGCGAGAGAAGACTTAACCATTGTTAGCTGCCAAACTGTACCAACTGTGGATGTATaGCACTTAAGAATACCCCAC | + |
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Preference number: 2 (lower is better) Translates to: TDTLLAREDLTIVSCQTVPTVDV*HLRIPH Trigger: GTGGGGTATTCTTAAGTGGCATACATCCACAGTTGG...TACAGTTTGGCAGCTAACAATGGTTAAGTCTTCTCTCGCTAGCAATGTATCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR CAA 90 bp | TCACCAGTTGTAAGTGAATCGTTTACTTGGATGGTCAGATTCACATaGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAGAAGACTT | + |
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Preference number: 2 (lower is better) Translates to: SPVVSESFTWMVRFT*CQKQDRYIASERRL Trigger: AAGTCTTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGAATCTGACCATCCAAGTAAACGATTCACTTACAACTGGTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088786.11 |
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| 3UTR-3UTR GCA 90 bp | TGGTCAGATTCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAGAATTCATTGGTTTGTTTTaGCCAACTGTGGATGTATGC | + |
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Preference number: 2 (lower is better) Translates to: WSDSHCARNKTDTLLAREFIGLF*PTVDVC Trigger: GCATACATCCACAGTTGGGCAAAACAAACCAATGAA...TTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGAATCTGACCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CCA 90 bp | TCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAGAAGACTTAACCAGGGCGAGTTCCAGTTaGAATGTTGAATATATTCAG | + |
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Preference number: 2 (lower is better) Translates to: SHCARNKTDTLLAREDLTRASSS*NVEYIQ Trigger: CTGAATATATTCAACATTCCAACTGGAACTCGCCCT...GGTTAAGTCTTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR TCA 90 bp | ACAGATACATTGCTAGCGAGAGAAGACTTAACCATTGTTAGCTGCCAAACTGTAAGAATACTTGGAAATTaGGTTGGAAGGAAGACCCTA | + |
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Preference number: 2 (lower is better) Translates to: TDTLLAREDLTIVSCQTVRILGN*VGRKTL Trigger: TAGGGTCTTCCTTCCAACTCAATTTCCAAGTATTCT...TACAGTTTGGCAGCTAACAATGGTTAAGTCTTCTCTCGCTAGCAATGTATCTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR TCA 90 bp | TTCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAGAAGACTTAACAGAATACTTGGAAATTaGGTTGGAAGGAAGACCCTA | + |
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Preference number: 2 (lower is better) Translates to: FTLCQKQDRYIASERRLNRILGN*VGRKTL Trigger: TAGGGTCTTCCTTCCAACTCAATTTCCAAGTATTCT...GTTAAGTCTTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CCA 90 bp | ACAGATACATTGCTAGCGAGAGAAGACTTAACCATTGTTAGCTGCCAAACTGTAAGGGCGAGTTCCAGTTaGAATGTTGAATATATTCAG | + |
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Preference number: 2 (lower is better) Translates to: TDTLLAREDLTIVSCQTVRASSS*NVEYIQ Trigger: CTGAATATATTCAACATTCCAACTGGAACTCGCCCT...TACAGTTTGGCAGCTAACAATGGTTAAGTCTTCTCTCGCTAGCAATGTATCTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR GCA 90 bp | CCTTTGTGTGTGTGTGTTTGTGTAAAACCTAATACGCTATTAGAGAATACTTGGTTCATTGGTTTGTTTTaGCCAACTGTGGATGTATGC | + |
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Preference number: 2 (lower is better) Translates to: PLCVCVCVKPNTLLENTWFIGLF*PTVDVC Trigger: GCATACATCCACAGTTGGGCAAAACAAACCAATGAA...CCAAGTATTCTCTAATAGCGTATTAGGTTTTACACAAACACACACACACAAAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR CCA 72 bp | AATCCCGTTCAACGGTTGTCAGGGAGTGGCTGTCGGTaGGGTCTGCACACAGCACTGAAGGCAGAGAGGAAG | + |
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Preference number: 3 (lower is better) Translates to: NPVQRLSGSGCR*GLHTALKAERK Trigger: CTTCCTCTCTGCCTTCAGTGCTGTGTGCAGACCCCACCGACAGCCACTCCCTGACAACCGTTGAACGGGATT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR CCA 72 bp | ACCATGGGGCCCGAGGCAGTAGTAAGCCACCCAACATaGGCGCTGGGGACTTTAGTCCTCCATAAGAGCAGT | + |
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Preference number: 3 (lower is better) Translates to: TMGPEAVVSHPT*ALGTLVLHKSS Trigger: ACTGCTCTTATGGAGGACTAAAGTCCCCAGCGCCCATGTTGGGTGGCTTACTACTGCCTCGGGCCCCATGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR TCA 72 bp | GCGCTGGGGACTTTAGTCCTCCATAAGAGCAGTACATaGGTATTGCTGAGCTGTCTCTCCTCCCCTGACATC | + |
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Preference number: 3 (lower is better) Translates to: ALGTLVLHKSST*VLLSCLSSPDI Trigger: GATGTCAGGGGAGGAGAGACAGCTCAGCAATACTCATGTACTGCTCTTATGGAGGACTAAAGTCCCCAGCGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR TCA 72 bp | TGTGTGCATGCATGTTTGCACTGGGATATCTGCAGGTaGAATGAAGGTGACCATGGGGCCCGAGGCAGTAGT | + |
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Preference number: 3 (lower is better) Translates to: CVHACLHWDICR*NEGDHGARGSS Trigger: ACTACTGCCTCGGGCCCCATGGTCACCTTCATTTCACCTGCAGATATCCCAGTGCAAACATGCATGCACACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CAA 90 bp | GGGATATCTGCAGGTGAAATGAAGGTGACCATGGGGCCCGAGGCAGTAGTAAGCATGGCAAAGAAGAACTaGGTGACAGTATTTGCCCCT | + |
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Preference number: 3 (lower is better) Translates to: GISAGEMKVTMGPEAVVSMAKKN*VTVFAP Trigger: AGGGGCAAATACTGTCACCAAGTTCTTCTTTGCCAT...GCTTACTACTGCCTCGGGCCCCATGGTCACCTTCATTTCACCTGCAGATATCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CAA 90 bp | TCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAGAAGACTTAACCTGTGTGCATGCATGTTaGCACTGGGATATCTGCAGG | + |
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Preference number: 3 (lower is better) Translates to: SHCARNKTDTLLAREDLTCVHAC*HWDICR Trigger: CCTGCAGATATCCCAGTGCAAACATGCATGCACACA...GGTTAAGTCTTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CAA 90 bp | ACTTGGATGGTCAGATTCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGCCAGGTTCATTGGTTaGTTTTGCCCAACTGTGGAT | + |
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Preference number: 3 (lower is better) Translates to: TWMVRFTLCQKQDRYIASARFIG*FCPTVD Trigger: ATCCACAGTTGGGCAAAACAAACCAATGAACCTGGC...GCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGAATCTGACCATCCAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CAA 90 bp | ACTTGGATGGTCAGATTCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCATGGCAAAGAAGAACTaGGTGACAGTATTTGCCCCT | + |
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Preference number: 3 (lower is better) Translates to: TWMVRFTLCQKQDRYIASMAKKN*VTVFAP Trigger: AGGGGCAAATACTGTCACCAAGTTCTTCTTTGCCAT...GCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGAATCTGACCATCCAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CAA 90 bp | TCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAGAAGACTTAACCTACTTGGAAATTGAGTaGGAAGGAAGACCCTACTCC | + |
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Preference number: 3 (lower is better) Translates to: SHCARNKTDTLLAREDLTYLEIE*EGRPYS Trigger: GGAGTAGGGTCTTCCTTCCAACTCAATTTCCAAGTA...GGTTAAGTCTTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR GCA 72 bp | ACATTGCTAGCGAGAGAAGACTTAACCATTGTTAGCTaGCAAACTGTAACAACAAAACCCTGGGGATGCTTT | + |
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Preference number: 3 (lower is better) Translates to: TLLAREDLTIVS*QTVTTKPWGCF Trigger: AAAGCATCCCCAGGGTTTTGTTGTTACAGTTTGGCAGCTAACAATGGTTAAGTCTTCTCTCGCTAGCAATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CAA 90 bp | CCTTTGTGTGTGTGTGTTTGTGTAAAACCTAATACGCTATTAGAGAATACTTGGTGTGTGCATGCATGTTaGCACTGGGATATCTGCAGG | + |
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Preference number: 3 (lower is better) Translates to: PLCVCVCVKPNTLLENTWCVHAC*HWDICR Trigger: CCTGCAGATATCCCAGTGCAAACATGCATGCACACA...CCAAGTATTCTCTAATAGCGTATTAGGTTTTACACAAACACACACACACAAAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CAA 90 bp | ACTTGGATGGTCAGATTCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAATACTTGGAAATaGAGTTGGAAGGAAGACCCT | + |
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Preference number: 3 (lower is better) Translates to: TWMVRFTLCQKQDRYIASENTWK*SWKEDP Trigger: AGGGTCTTCCTTCCAACTCAATTTCCAAGTATTCTC...GCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGAATCTGACCATCCAAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CAA 90 bp | ACAGATACATTGCTAGCGAGAGAAGACTTAACCATTGTTAGCTGCCAAACTGTAGTTCATTGGTTTGTTTaGCCCAACTGTGGATGTATG | + |
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Preference number: 3 (lower is better) Translates to: TDTLLAREDLTIVSCQTVVHWFV*PNCGCM Trigger: CATACATCCACAGTTGGGCAAAACAAACCAATGAAC...TACAGTTTGGCAGCTAACAATGGTTAAGTCTTCTCTCGCTAGCAATGTATCTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CAA 90 bp | CCTTTGTGTGTGTGTGTTTGTGTAAAACCTAATACGCTATTAGAGAATACTTGGGCCAGGTTCATTGGTTaGTTTTGCCCAACTGTGGAT | + |
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Preference number: 3 (lower is better) Translates to: PLCVCVCVKPNTLLENTWARFIG*FCPTVD Trigger: ATCCACAGTTGGGCAAAACAAACCAATGAACCTGGC...CCAAGTATTCTCTAATAGCGTATTAGGTTTTACACAAACACACACACACAAAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CAA 90 bp | TCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAGAAGACTTAACCGCTATTAGAGAATACTaGGAAATTGAGTTGGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: SHCARNKTDTLLAREDLTAIREY*EIELEG Trigger: TCCTTCCAACTCAATTTCCAAGTATTCTCTAATAGC...GGTTAAGTCTTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR-3UTR CAA 90 bp | ACAGATACATTGCTAGCGAGAGAAGACTTAACCATTGTTAGCTGCCAAACTGTAGCTATTAGAGAATACTaGGAAATTGAGTTGGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: TDTLLAREDLTIVSCQTVAIREY*EIELEG Trigger: TCCTTCCAACTCAATTTCCAAGTATTCTCTAATAGC...TACAGTTTGGCAGCTAACAATGGTTAAGTCTTCTCTCGCTAGCAATGTATCTGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| 3UTR CCA 72 bp | ACCATTGTTAGCTGCCAAACTGTAACAACAAAACCCTaGGGATGCTTTTTACTCAAATATACCTTTGCATAC | + |
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Preference number: 3 (lower is better) Translates to: TIVSCQTVTTKP*GCFLLKYTFAY Trigger: GTATGCAAAGGTATATTTGAGTAAAAAGCATCCCCAGGGTTTTGTTGTTACAGTTTGGCAGCTAACAATGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| CDS-3UTR TCA 90 bp | GGGATATCTGCAGGTGAAATGAAGGTGACCATGGGGCCCGAGGCAGTAGTAAGCGTATCGCTTTGCAACTaGATTCACAGTTTGGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: GISAGEMKVTMGPEAVVSVSLCN*IHSLGA Trigger: AGCCCCCAAACTGTGAATTCAGTTGCAAAGCGATAC...GCTTACTACTGCCTCGGGCCCCATGGTCACCTTCATTTCACCTGCAGATATCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| CDS-3UTR CCA 90 bp | GGGATATCTGCAGGTGAAATGAAGGTGACCATGGGGCCCGAGGCAGTAGTAAGCACTGAATTCACAGTTTaGGGGCTCAACCTGAATCCC | + |
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Preference number: 4 (lower is better) Translates to: GISAGEMKVTMGPEAVVSTEFTV*GLNLNP Trigger: GGGATTCAGGTTGAGCCCCCAAACTGTGAATTCAGT...GCTTACTACTGCCTCGGGCCCCATGGTCACCTTCATTTCACCTGCAGATATCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| CDS-3UTR TCA 90 bp | GAATACCCCACACAAACTTTAACCACATTCCTCAGGGAAAGAAACAATAACAGCGTATCGCTTTGCAACTaGATTCACAGTTTGGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: EYPTQTLTTFLRERNNNSVSLCN*IHSLGA Trigger: AGCCCCCAAACTGTGAATTCAGTTGCAAAGCGATAC...GCTGTTATTGTTTCTTTCCCTGAGGAATGTGGTTAAAGTTTGTGTGGGGTATTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| CDS-3UTR CCA 90 bp | TTCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAGAAGACTTAACACTGAATTCACAGTTTaGGGGCTCAACCTGAATCCC | + |
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Preference number: 4 (lower is better) Translates to: FTLCQKQDRYIASERRLNTEFTV*GLNLNP Trigger: GGGATTCAGGTTGAGCCCCCAAACTGTGAATTCAGT...GTTAAGTCTTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| CDS CCA 90 bp | ATCTTCCCGCTGGTGCTGTATCGCTTTGCAACTGAATTCACAGTTTaGGGGCTCAACCTGAATCCCATAGTCGTCAGGGCCTTCTGTAGC | + |
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Preference number: 5 (lower is better) Translates to: IFPLVLYRFATEFTV*GLNLNPIVVRAFCS Trigger: GCTACAGAAGGCCCTGACGACTATGGGATTCAGGTTGAGCCCCCAAACTGTGAATTCAGTTGCAAAGCGATACAGCACCAGCGGGAAGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| CDS-3UTR CAA 90 bp | GGGATATCTGCAGGTGAAATGAAGGTGACCATGGGGCCCGAGGCAGTAGTAAGCGAAACTGATGAAGTGTaGTCTCCAGCCATTCAGCAC | + |
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Preference number: 5 (lower is better) Translates to: GISAGEMKVTMGPEAVVSETDEV*SPAIQH Trigger: GTGCTGAATGGCTGGAGACAACACTTCATCAGTTTC...GCTTACTACTGCCTCGGGCCCCATGGTCACCTTCATTTCACCTGCAGATATCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| CDS TCA 90 bp | GTCATCAAACGTGATCTTCCCGCTGGTGCTGTATCGCTTTGCAACTaGATTCACAGTTTGGGGGCTCAACCTGAATCCCATAGTCGTCAG | + |
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Preference number: 5 (lower is better) Translates to: VIKRDLPAGAVSLCN*IHSLGAQPESHSRQ Trigger: CTGACGACTATGGGATTCAGGTTGAGCCCCCAAACTGTGAATTCAGTTGCAAAGCGATACAGCACCAGCGGGAAGATCACGTTTGATGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| CDS-3UTR CAA 90 bp | TGGTCAGATTCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAGAAACAGCCCAGAGCTCTTaGAATTCATTGAACCCCATC | + |
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Preference number: 5 (lower is better) Translates to: WSDSHCARNKTDTLLARETAQSS*NSLNPI Trigger: GATGGGGTTCAATGAATTCAAAGAGCTCTGGGCTGT...TTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGAATCTGACCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| CDS-3UTR CAA 90 bp | TGGTCAGATTCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAGAAGAAATTCACAACTCCTaGTTGACCCGAATCCCGTCT | + |
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Preference number: 5 (lower is better) Translates to: WSDSHCARNKTDTLLAREEIHNS*LTRIPS Trigger: AGACGGGATTCGGGTCAACAAGGAGTTGTGAATTTC...TTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGAATCTGACCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| CDS-3UTR CAA 90 bp | ACAGATACATTGCTAGCGAGAGAAGACTTAACCATTGTTAGCTGCCAAACTGTAACAGCCCAGAGCTCTTaGAATTCATTGAACCCCATC | + |
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Preference number: 5 (lower is better) Translates to: TDTLLAREDLTIVSCQTVTAQSS*NSLNPI Trigger: GATGGGGTTCAATGAATTCAAAGAGCTCTGGGCTGT...TACAGTTTGGCAGCTAACAATGGTTAAGTCTTCTCTCGCTAGCAATGTATCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| CDS-3UTR CAA 90 bp | ACAGATACATTGCTAGCGAGAGAAGACTTAACCATTGTTAGCTGCCAAACTGTAGAAACTGATGAAGTGTaGTCTCCAGCCATTCAGCAC | + |
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Preference number: 5 (lower is better) Translates to: TDTLLAREDLTIVSCQTVETDEV*SPAIQH Trigger: GTGCTGAATGGCTGGAGACAACACTTCATCAGTTTC...TACAGTTTGGCAGCTAACAATGGTTAAGTCTTCTCTCGCTAGCAATGTATCTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| CDS-3UTR CAA 90 bp | GAATACCCCACACAAACTTTAACCACATTCCTCAGGGAAAGAAACAATAACAGCGAAATTCACAACTCCTaGTTGACCCGAATCCCGTCT | + |
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Preference number: 5 (lower is better) Translates to: EYPTQTLTTFLRERNNNSEIHNS*LTRIPS Trigger: AGACGGGATTCGGGTCAACAAGGAGTTGTGAATTTC...GCTGTTATTGTTTCTTTCCCTGAGGAATGTGGTTAAAGTTTGTGTGGGGTATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| CDS-3UTR CAA 90 bp | TGGTCAGATTCACATTGTGCCAGAAACAAGACAGATACATTGCTAGCGAGAGAATGGTGCTGTATCGCTTaGCAACTGAATTCACAGTTT | + |
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Preference number: 5 (lower is better) Translates to: WSDSHCARNKTDTLLAREWCCIA*QLNSQF Trigger: AAACTGTGAATTCAGTTGCAAAGCGATACAGCACCA...TTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTGGCACAATGTGAATCTGACCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| CDS CCA 72 bp | CTGGTGCTGTATCGCTTTGCAACTGAATTCACAGTTTaGGGGCTCAACCTGAATCCCATAGTCGTCAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: LVLYRFATEFTV*GLNLNPIVVRA Trigger: GGCCCTGACGACTATGGGATTCAGGTTGAGCCCCCAAACTGTGAATTCAGTTGCAAAGCGATACAGCACCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| CDS CAA 90 bp | CTGATGAAGTGTTGTCTCCAGCCATTCAGCACAGCCCAGAGCTCTTaGAATTCATTGAACCCCATCGTGCCGGACATATCTCTATCCAAC | + |
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Preference number: 6 (lower is better) Translates to: LMKCCLQPFSTAQSS*NSLNPIVPDISLSN Trigger: GTTGGATAGAGATATGTCCGGCACGATGGGGTTCAATGAATTCAAAGAGCTCTGGGCTGTGCTGAATGGCTGGAGACAACACTTCATCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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| CDS TCA 72 bp | GAACCCCATCGTGCCGGACATATCTCTATCCAACATTaGAACCATAAGGCGACAAGTCTCCAGGTTAAAAGG | + |
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Preference number: 6 (lower is better) Translates to: EPHRAGHISIQH*NHKATSLQVKR Trigger: CCTTTTAACCTGGAGACTTGTCGCCTTATGGTTTCAATGTTGGATAGAGATATGTCCGGCACGATGGGGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088786.11 ENSMUST00000148633.4 |
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