Pregenerated sensors for SREK1IP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021716Ensembl transcript IDs: ENSMUST00000022230.15, ENSMUST00000156105.2
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GCAAATCACTCCTGCCGAGGCAGCTGTGCCACTGGAAGGCGGACACGACTCAGACCTCTTCAGTGGCACTaGAGTAAGACCTTTTCCTCC | + |
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Preference number: 2 (lower is better) Translates to: ANHSCRGSCATGRRTRLRPLQWH*SKTFSS Trigger: GGAGGAAAAGGTCTTACTCCAGTGCCACTGAAGAGG...TCTGAGTCGTGTCCGCCTTCCAGTGGCACAGCTGCCTCGGCAGGAGTGATTTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156105.2 |
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| 3UTR-3UTR GCA 90 bp | GCAAATCACTCCTGCCGAGGCAGCTGTGCCACTGGAAGGCGGACACGACTCAGAAACATGGGAGGCAAGTaGCAGAAACATGCATTTCAT | + |
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Preference number: 2 (lower is better) Translates to: ANHSCRGSCATGRRTRLRNMGGK*QKHAFH Trigger: ATGAAATGCATGTTTCTGGCACTTGCCTCCCATGTT...TCTGAGTCGTGTCCGCCTTCCAGTGGCACAGCTGCCTCGGCAGGAGTGATTTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022230.15 ENSMUST00000156105.2 |
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| 3UTR-3UTR GCA 90 bp | CAAATCACTCCTGCCGAGGCAGCTGTGCCACTGGAAGGCGGACACGACTCAGAGCTTCATTTATTCCTCTaGTGTAGCCCTCGTATGCAA | + |
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Preference number: 2 (lower is better) Translates to: QITPAEAAVPLEGGHDSELHLFL*CSPRMQ Trigger: TTGCATACGAGGGCTACAGCAGAGGAATAAATGAAG...CTCTGAGTCGTGTCCGCCTTCCAGTGGCACAGCTGCCTCGGCAGGAGTGATTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156105.2 |
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| 3UTR CAA 90 bp | TACCCCTCAGTCAATCAGGGAATGTCAGTTTGGGTAAGGGAACAATaGCTAAAGCCCTCCAGCCTGCAAGGCCAAGTGTACGCATCTCAT | + |
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Preference number: 2 (lower is better) Translates to: YPSVNQGMSVWVREQ*LKPSSLQGQVYASH Trigger: ATGAGATGCGTACACTTGGCCTTGCAGGCTGGAGGGCTTTAGCAATTGTTCCCTTACCCAAACTGACATTCCCTGATTGACTGAGGGGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022230.15 |
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| 3UTR-3UTR CCA 90 bp | ATTCAGTATCAAGAGCAAATCACTCCTGCCGAGGCAGCTGTGCCACTGGAAGGCGTGAGAATGTCTTTATaGAAGAGGCTGGGACTTCCT | + |
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Preference number: 2 (lower is better) Translates to: IQYQEQITPAEAAVPLEGVRMSL*KRLGLP Trigger: AGGAAGTCCCAGCCTCTTCCATAAAGACATTCTCAC...GCCTTCCAGTGGCACAGCTGCCTCGGCAGGAGTGATTTGCTCTTGATACTGAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022230.15 ENSMUST00000156105.2 |
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| 3UTR-3UTR GCA 90 bp | CAAATTTCATTATTACACAAAGGCTTTCACGATGCTATCTCCAAGTCGTCAATTAGAGCAAATCACTCCTaGCGAGGCAGCTGTGCCACT | + |
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Preference number: 2 (lower is better) Translates to: QISLLHKGFHDAISKSSIRANHS*RGSCAT Trigger: AGTGGCACAGCTGCCTCGGCAGGAGTGATTTGCTCT...AATTGACGACTTGGAGATAGCATCGTGAAAGCCTTTGTGTAATAATGAAATTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022230.15 ENSMUST00000156105.2 |
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| 3UTR-3UTR TCA 90 bp | AGTGCTACTAAGATCTGTGACCGACGTGGAAGAGGAAATATCAACATTGATTATGGAAAGACGCCTCTATaGTGTGCACAGTTACATAAG | + |
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Preference number: 2 (lower is better) Translates to: SATKICDRRGRGNINIDYGKTPL*CAQLHK Trigger: CTTATGTAACTGTGCACATCATAGAGGCGTCTTTCC...ATAATCAATGTTGATATTTCCTCTTCCACGTCGGTCACAGATCTTAGTAGCACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156105.2 |
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| 3UTR-3UTR TCA 90 bp | CTTAATTTAAAAATTTTCACAGTGCTACTAAGATCTGTGACCGACGTGGAAGAGGCTGTTACTTTTTGGTaGGTTCAGAATGGTAAGGGG | + |
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Preference number: 2 (lower is better) Translates to: LNLKIFTVLLRSVTDVEEAVTFW*VQNGKG Trigger: CCCCTTACCATTCTGAACTCACCAAAAAGTAACAGC...CTCTTCCACGTCGGTCACAGATCTTAGTAGCACTGTGAAAATTTTTAAATTAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000156105.2 |
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| 3UTR-3UTR GCA 90 bp | TCAACATTGATTATCCATGAGCCAGAAGTTCAGTGTGAAACTCACTCTAAAACCAACATGGGAGGCAAGTaGCAGAAACATGCATTTCAT | + |
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Preference number: 2 (lower is better) Translates to: STLIIHEPEVQCETHSKTNMGGK*QKHAFH Trigger: ATGAAATGCATGTTTCTGGCACTTGCCTCCCATGTT...GGTTTTAGAGTGAGTTTCACACTGAACTTCTGGCTCATGGATAATCAATGTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022230.15 ENSMUST00000156105.2 |
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| 3UTR-3UTR CCA 90 bp | ACATGCCAATATGGCACATTTGTAAATCAACCCAGGATCTACCCTAATAATCTTGTGAGAATGTCTTTATaGAAGAGGCTGGGACTTCCT | + |
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Preference number: 2 (lower is better) Translates to: TCQYGTFVNQPRIYPNNLVRMSL*KRLGLP Trigger: AGGAAGTCCCAGCCTCTTCCATAAAGACATTCTCAC...AAGATTATTAGGGTAGATCCTGGGTTGATTTACAAATGTGCCATATTGGCATGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022230.15 ENSMUST00000156105.2 |
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| 3UTR TCA 72 bp | ATCATTCCTGTGACTGCAGTAAAGCCACGTGCTAATTaGCTTACCGAGGGACAGCACCGGCCTAAGCCACCA | + |
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Preference number: 3 (lower is better) Translates to: IIPVTAVKPRAN*LTEGQHRPKPP Trigger: TGGTGGCTTAGGCCGGTGCTGTCCCTCGGTAAGTCAATTAGCACGTGGCTTTACTGCAGTCACAGGAATGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022230.15 ENSMUST00000156105.2 |
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| 3UTR TCA 72 bp | CGGAGGCTTCGGGGCTGTTCGATGATAGCAGGTTGGTaGTCAATGTTTTTATGGCATAATGCATTAACTTGG | + |
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Preference number: 3 (lower is better) Translates to: RRLRGCSMIAGW*SMFLWHNALTW Trigger: CCAAGTTAATGCATTATGCCATAAAAACATTGATCACCAACCTGCTATCATCGAACAGCCCCGAAGCCTCCG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022230.15 |
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| 3UTR GCA 72 bp | CTCTTCTTCATTTATTCCTCTGCTGTAGCCCTCGTATaGAATAGGAAAGACGCCTCTATGATGTGCACAGTT | + |
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Preference number: 3 (lower is better) Translates to: LFFIYSSAVALV*NRKDASMMCTV Trigger: AACTGTGCACATCATAGAGGCGTCTTTCCTATTGCATACGAGGGCTACAGCAGAGGAATAAATGAAGAAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156105.2 |
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| 3UTR-3UTR CAA 90 bp | ACATGCCAATATGGCACATTTGTAAATCAACCCAGGATCTACCCTAATAATCTTATACTTCTGTTTCTTTaGTTTTGCGGAGTCCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: TCQYGTFVNQPRIYPNNLILLFL*FCGVLF Trigger: GAAGAGGACTCCGCAAAACAAAAGAAACAGAAGTAT...AAGATTATTAGGGTAGATCCTGGGTTGATTTACAAATGTGCCATATTGGCATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156105.2 |
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| CDS-3UTR GCA 90 bp | GCAAATCACTCCTGCCGAGGCAGCTGTGCCACTGGAAGGCGGACACGACTCAGAGGCTTACTTTTCTCCTaGAGAGCCTGCAGCTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: ANHSCRGSCATGRRTRLRGLLFS*RACSLF Trigger: GAACAAGCTGCAGGCTCTGCAGGAGAAAAGTAAGCC...TCTGAGTCGTGTCCGCCTTCCAGTGGCACAGCTGCCTCGGCAGGAGTGATTTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156105.2 |
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| CDS-3UTR GCA 90 bp | GACAGCACCGGCCTAAGCCACCAAAAGAATGATGTGCTTTGTAAGTACGCATGTTTCTCCTGCAGAGCCTaGAGCTTGTTCAGCTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: DSTGLSHQKNDVLCKYACFSCRA*SLFSSS Trigger: TGAGGAGCTGAACAAGCTGCAGGCTCTGCAGGAGAA...ACATGCGTACTTACAAAGCACATCATTCTTTTGGTGGCTTAGGCCGGTGCTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022230.15 ENSMUST00000156105.2 |
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| 3UTR CAA 72 bp | GTCAATCAGGGAATGTCAGTTTGGGTAAGGGAACAATaGCTAAAGCCCTCCAGCCTGCAAGGCCAAGTGTAC | + |
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Preference number: 4 (lower is better) Translates to: VNQGMSVWVREQ*LKPSSLQGQVY Trigger: GTACACTTGGCCTTGCAGGCTGGAGGGCTTTAGCAATTGTTCCCTTACCCAAACTGACATTCCCTGATTGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022230.15 |
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| 3UTR CAA 72 bp | CTAGGACTACCCCTCAGTCAATCAGGGAATGTCAGTTaGGGTAAGGGAACAATTGCTAAAGCCCTCCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: LGLPLSQSGNVS*GKGTIAKALQP Trigger: AGGCTGGAGGGCTTTAGCAATTGTTCCCTTACCCAAACTGACATTCCCTGATTGACTGAGGGGTAGTCCTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022230.15 |
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| CDS-3UTR CCA 90 bp | CGTGCACTTACCAATCTGAAGATGTATGAAGTGAACCATAGCAAGGTACTCGGACCTCTTCAGTGGCACTaGAGTAAGACCTTTTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: RALTNLKMYEVNHSKVLGPLQWH*SKTFSS Trigger: GGAGGAAAAGGTCTTACTCCAGTGCCACTGAAGAGG...TCCGAGTACCTTGCTATGGTTCACTTCATACATCTTCAGATTGGTAAGTGCACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022230.15 |
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| CDS-3UTR GCA 90 bp | GCACATCTGCTAAGTAAAGAGATGGGTTTAATACAGATGGTCAGAGAGAGAAGGCTACCCGGAGAAAATTaGGGCACTCGAAAGTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: AHLLSKEMGLIQMVRERRLPGEN*GTRKSD Trigger: ATCTGACTTTCGAGTGCCGCAATTTTCTCCGGGTAG...CCTTCTCTCTCTGACCATCTGTATTAAACCCATCTCTTTACTTAGCAGATGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022230.15 ENSMUST00000156105.2 |
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| CDS-3UTR GCA 90 bp | CTAAGCCACCAAAAGAATGATGTGCTTTGTAAGTACGCATGTCTATACTTGAGGCTACCCGGAGAAAATTaGGGCACTCGAAAGTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: LSHQKNDVLCKYACLYLRLPGEN*GTRKSD Trigger: ATCTGACTTTCGAGTGCCGCAATTTTCTCCGGGTAG...CCTCAAGTATAGACATGCGTACTTACAAAGCACATCATTCTTTTGGTGGCTTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022230.15 ENSMUST00000156105.2 |
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| CDS-3UTR GCA 90 bp | ACATGCCAATATGGCACATTTGTAAATCAACCCAGGATCTACCCTAATAATCTTTTCTCCTGCAGAGCCTaGAGCTTGTTCAGCTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: TCQYGTFVNQPRIYPNNLFSCRA*SLFSSS Trigger: TGAGGAGCTGAACAAGCTGCAGGCTCTGCAGGAGAA...AAGATTATTAGGGTAGATCCTGGGTTGATTTACAAATGTGCCATATTGGCATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022230.15 ENSMUST00000156105.2 |
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| 3UTR CAA 72 bp | GAGGATTTTGCTGCTACCACACAAAAAGCTCTGTGTTaGAGGTATCACCTAAGACATGCCAATATGGCACAT | + |
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Preference number: 4 (lower is better) Translates to: EDFAATTQKALC*RYHLRHANMAH Trigger: ATGTGCCATATTGGCATGTCTTAGGTGATACCTCAAACACAGAGCTTTTTGTGTGGTAGCAGCAAAATCCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022230.15 ENSMUST00000156105.2 |
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| CDS-3UTR GCA 90 bp | TCACCTAAGACATGCCAATATGGCACATTTGTAAATCAACCCAGGATCTACCCTTTTATTCTTTTCTCCTaGAGAGCCTGCAGCTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: SPKTCQYGTFVNQPRIYPFILFS*RACSLF Trigger: GAACAAGCTGCAGGCTCTGCAGGAGAAAAGAATAAA...AGGGTAGATCCTGGGTTGATTTACAAATGTGCCATATTGGCATGTCTTAGGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022230.15 |
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| 3UTR CAA 72 bp | AGATCTGTGACCGACGTGGAAGAGGAAATATCAACATaGATTATCCATGAGCCAGAAGTTCAGTGTGAAACT | + |
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Preference number: 4 (lower is better) Translates to: RSVTDVEEEIST*IIHEPEVQCET Trigger: AGTTTCACACTGAACTTCTGGCTCATGGATAATCAATGTTGATATTTCCTCTTCCACGTCGGTCACAGATCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022230.15 ENSMUST00000156105.2 |
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| CDS-3UTR CAA 90 bp | ATTCAGTATCAAGAGCAAATCACTCCTGCCGAGGCAGCTGTGCCACTGGAAGGCATACTTCTGTTTCTTTaGTTTTGCGGAGTCCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: IQYQEQITPAEAAVPLEGILLFL*FCGVLF Trigger: GAAGAGGACTCCGCAAAACAAAAGAAACAGAAGTAT...GCCTTCCAGTGGCACAGCTGCCTCGGCAGGAGTGATTTGCTCTTGATACTGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022230.15 |
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| CDS-3UTR CAA 90 bp | ATTTTCACAGTGCTACTAAGATCTGTGACCGACGTGGAAGAGGAAATATCAACATGCAGAGCCTGCAGCTaGTTCAGCTCCTCATTTTCT | + |
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Preference number: 5 (lower is better) Translates to: IFTVLLRSVTDVEEEISTCRACS*FSSSFS Trigger: AGAAAATGAGGAGCTGAACAAGCTGCAGGCTCTGCA...TGTTGATATTTCCTCTTCCACGTCGGTCACAGATCTTAGTAGCACTGTGAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022230.15 ENSMUST00000156105.2 |
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| CDS GCA 72 bp | AGGACAGTGGGCAGGAACCACGGCTTACTTTTCTCCTaGAGAGCCTGCAGCTTGTTCAGCTCCTCATTTTCT | + |
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Preference number: 6 (lower is better) Translates to: RTVGRNHGLLFS*RACSLFSSSFS Trigger: AGAAAATGAGGAGCTGAACAAGCTGCAGGCTCTGCAGGAGAAAAGTAAGCCGTGGTTCCTGCCCACTGTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156105.2 |
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| CDS GCA 72 bp | GGCAGGAACCACGGCTTACTTTTCTCCTGCAGAGCCTaGAGCTTGTTCAGCTCCTCATTTTCTTCATCACTG | + |
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Preference number: 6 (lower is better) Translates to: GRNHGLLFSCRA*SLFSSSFSSSL Trigger: CAGTGATGAAGAAAATGAGGAGCTGAACAAGCTGCAGGCTCTGCAGGAGAAAAGTAAGCCGTGGTTCCTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156105.2 |
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